ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal39a06 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 102 bits (254), Expect(2) = 1e-41 Identities = 50/50 (100%), Positives = 50/50 (100%) Frame = +1 Query: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 150 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG Sbjct: 378 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427 Score = 86.3 bits (212), Expect(2) = 1e-41 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = +3 Query: 198 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 311 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 82.4 bits (202), Expect(2) = 8e-30 Identities = 39/50 (78%), Positives = 45/50 (90%) Frame = +1 Query: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 150 MT++KLL YG MLVQEQ+NVKRVQLAD YMS+AALGDAN DA+K G+FYG Sbjct: 388 MTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437 Score = 66.6 bits (161), Expect(2) = 8e-30 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%) Frame = +3 Query: 195 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 311 GG+ AQQ G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 80.9 bits (198), Expect(2) = 1e-29 Identities = 38/50 (76%), Positives = 45/50 (90%) Frame = +1 Query: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 150 MT EKL+EYG+MLV EQ+NVKRVQLA+TY+SQAALGDAN DA+ G+FYG Sbjct: 388 MTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437 Score = 67.8 bits (164), Expect(2) = 1e-29 Identities = 29/38 (76%), Positives = 33/38 (86%) Frame = +3 Query: 198 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 311 GKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 80.5 bits (197), Expect(2) = 2e-28 Identities = 37/50 (74%), Positives = 46/50 (92%) Frame = +1 Query: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 150 MT++KL+EYG+MLVQEQ+NVKRVQLAD YMS AALGDAN+DA+ G+F+G Sbjct: 386 MTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435 Score = 63.9 bits (154), Expect(2) = 2e-28 Identities = 28/36 (77%), Positives = 30/36 (83%) Frame = +3 Query: 198 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 305 GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 89.7 bits (221), Expect = 3e-18 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +1 Query: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 150 MT+EKL+EYGHMLVQEQ+NVKRVQLAD Y+S+AALG AN DAMKTG+FYG Sbjct: 375 MTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 88.2 bits (217), Expect = 8e-18 Identities = 41/50 (82%), Positives = 47/50 (94%) Frame = +1 Query: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 150 MT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+S+AALGDAN DAM TG+FYG Sbjct: 388 MTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 87.8 bits (216), Expect = 1e-17 Identities = 40/50 (80%), Positives = 48/50 (96%) Frame = +1 Query: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 150 MT+EKL+EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN DAMKTGSFYG Sbjct: 378 MTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 84.3 bits (207), Expect = 1e-16 Identities = 38/49 (77%), Positives = 47/49 (95%) Frame = +1 Query: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 147 +T+EKLLEYGHMLV EQ+NVKRVQLAD Y+++AALG+AN+DAMKTGSF+ Sbjct: 384 ITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 80.9 bits (198), Expect = 1e-15 Identities = 38/48 (79%), Positives = 45/48 (93%) Frame = +1 Query: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 144 MTVEKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG+F Sbjct: 392 MTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 80.9 bits (198), Expect = 1e-15 Identities = 37/48 (77%), Positives = 46/48 (95%) Frame = +1 Query: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 144 MT++KLL+YG+MLV+EQ+NVKRVQLAD YMS+AALGDANQDA+K G+F Sbjct: 388 MTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 80.1 bits (196), Expect = 2e-15 Identities = 37/49 (75%), Positives = 44/49 (89%) Frame = +1 Query: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 147 MT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+ +AALGDAN DA+ GSF+ Sbjct: 392 MTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 77.4 bits (189), Expect = 1e-14 Identities = 34/49 (69%), Positives = 48/49 (97%) Frame = +1 Query: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 147 M+++KLL+YG+MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 390 MSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 77.0 bits (188), Expect = 2e-14 Identities = 36/46 (78%), Positives = 43/46 (93%) Frame = +1 Query: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 138 MT+EKLLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG Sbjct: 387 MTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 73.9 bits (180), Expect = 2e-13 Identities = 34/49 (69%), Positives = 45/49 (91%) Frame = +1 Query: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 147 MT++KLL Y MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 392 MTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 44.7 bits (104), Expect = 1e-04 Identities = 20/25 (80%), Positives = 24/25 (96%) Frame = +1 Query: 1 MTVEKLLEYGHMLVQEQDNVKRVQL 75 MT+EKLLEYG+MLV EQ+NVKRV+L Sbjct: 385 MTIEKLLEYGNMLVMEQENVKRVKL 409
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 43.9 bits (102), Expect = 2e-04 Identities = 21/35 (60%), Positives = 26/35 (74%) Frame = +1 Query: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAAL 105 M + L++YG LV EQ+NVKRVQLAD Y+S A L Sbjct: 360 MDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394
>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor| XE12/XE47) Length = 658 Score = 28.9 bits (63), Expect = 5.8 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Frame = +3 Query: 138 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 296 F L + N PT S GGG G ++ T P G D N +D DG+ Sbjct: 26 FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = -2 Query: 294 CRRRSLPLGRSSWHFGRCNLP 232 CRR P GR H GRCN P Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134
>CORIN_HUMAN (Q9Y5Q5) Atrial natriuteric peptide-converting enzyme (EC 3.4.21.-)| (pro-ANP-converting enzyme) (Corin) (Heart-specific serine proteinase ATC2) (Transmembrane protease, serine 10) Length = 1042 Score = 28.1 bits (61), Expect = 9.9 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = -2 Query: 180 RWWVCMENFLTVEGTSLHRILVSITQSCLAHVGVSKLHT 64 RW N+ ++ GT+LH +LV+ QSC + +S L T Sbjct: 749 RWLTLHSNWESLNGTTLHELLVN-GQSCESRSKISLLCT 786 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,060,154 Number of Sequences: 219361 Number of extensions: 1249168 Number of successful extensions: 3252 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3167 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3251 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
