ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal39a06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 773 bits (390), Expect = 0.0 Identities = 428/434 (98%), Gaps = 5/434 (1%) Strand = Plus / Plus Query: 1 atgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1273 atgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtc 1332 Query: 61 aagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1333 aagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccag 1392 Query: 121 gatgcgatgaagactggttccttctacggttagaaaattctccatac-acacccaccatc 179 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1393 gatgcgatgaagactggttccttctacggttagaaaattctccatacaacacccaccatc 1452 Query: 180 tcttgctgcataggaggaggtaaaggagcacagcaaggtactttgcccg-tgccggaagg 238 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1453 tcttgctgcataggaggaggtaaaggagcacagcaaggtactttgcccgatgccggaagg 1512 Query: 239 ttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacg-acggcagct 297 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1513 ttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgaacggcagct 1572 Query: 298 gcctttacaccttttaagcatgccacttttaatatctgatgttttacctac-ctaagtcc 356 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1573 gcctttacaccttttaagcatgccacttttaatatctgatgttttacctacactaagtcc 1632 Query: 357 gcatcgcatccaagcgattgctgggcatgttttgttaatatatctctaaat-atattgag 415 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct: 1633 gcatcgcatccaagcgattgctgggcatgttttgttaatatatctctaaataatattgtg 1692 Query: 416 tatacccatttggc 429 |||||||||||||| Sbjct: 1693 tatacccatttggc 1706
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 620 bits (313), Expect = e-175 Identities = 406/434 (93%), Gaps = 11/434 (2%) Strand = Plus / Plus Query: 1 atgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtc 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 343 atgacagtggagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtc 402 Query: 61 aagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 403 aagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccag 462 Query: 121 gatgcgatgaagactggttccttctacggttagaaaattctccatacacacccaccatct 180 |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 463 gatgcgatgaagactggtaccttctacggttagaacattctccatacacacccaccatct 522 Query: 181 cttgctgcataggaggaggtaaaggagcacagcaaggtactttgcccgtgccggaaggtt 240 ||||||||||||||||||||||||| |||||||||||||||||||| || |||| ||| | Sbjct: 523 cttgctgcataggaggaggtaaaggggcacagcaaggtactttgcctgtaccggcaggat 582 Query: 241 gcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcc 300 |||||||||| | ||||||||||| |||||||||||| ||||| |||||||||||||||| Sbjct: 583 gcaccgaccagactgccaagaacttcgacccaacggcgaggagtgacgacggcagctgcc 642 Query: 301 tttacaccttttaagcatgccacttttaatatctgatgttttacc-----tacctaagt- 354 |||||||||||||||||||||| ||||||||||||||||||| | ||||||||| Sbjct: 643 tttacaccttttaagcatgcca-atttaatatctgatgttttatcctttgtacctaagta 701 Query: 355 ccgcatcgcatccaagcgattgctgggcatgttttgttaatatatctctaaatatattga 414 |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct: 702 ccgcatcgcatccaagcgattgctgggcatgttttgttaatata----taaagatattga 757 Query: 415 gtatacccatttgg 428 ||||||| |||||| Sbjct: 758 gtatacctatttgg 771
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 613 bits (309), Expect = e-172 Identities = 383/405 (94%), Gaps = 7/405 (1%) Strand = Plus / Plus Query: 1 atgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtc 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1193 atgacagtggagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtc 1252 Query: 61 aagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1253 aagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccag 1312 Query: 121 gatgcgatgaagactggttccttctacggttagaaaattctccatacacacccaccatct 180 |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 1313 gatgcgatgaagactggtaccttctacggttagaacattctccatacacacccaccatct 1372 Query: 181 cttgctgcataggaggaggtaaaggagcacagcaaggtactttgcccgtgccggaaggtt 240 ||||||||||||||||||||||||| |||||||||||||||||||| || |||| ||| | Sbjct: 1373 cttgctgcataggaggaggtaaaggggcacagcaaggtactttgcctgtaccggcaggat 1432 Query: 241 gcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcc 300 |||||||||| | ||||||||||| |||||||||||| ||||| |||||||||||||||| Sbjct: 1433 gcaccgaccagactgccaagaacttcgacccaacggcgaggagtgacgacggcagctgcc 1492 Query: 301 tttacaccttttaagcatgccacttttaatatctgatgttttacc-----tacctaagt- 354 |||||||||||||||||||||| ||||||||||||||||||| | ||||||||| Sbjct: 1493 tttacaccttttaagcatgcca-atttaatatctgatgttttatcctttgtacctaagta 1551 Query: 355 ccgcatcgcatccaagcgattgctgggcatgttttgttaatatat 399 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1552 ccgcatcgcatccaagcgattgctgggcatgttttgttaatatat 1596
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 456 bits (230), Expect = e-125 Identities = 233/234 (99%) Strand = Plus / Plus Query: 196 gaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatg 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7523 gaggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatg 7582 Query: 256 ccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaag 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7583 ccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaag 7642 Query: 316 catgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgatt 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7643 catgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgatt 7702 Query: 376 gctgggcatgttttgttaatatatctctaaatatattgagtatacccatttggc 429 |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 7703 gctgggcatgttttgttaatatatctctaaatatattgtgtatacccatttggc 7756 Score = 396 bits (200), Expect = e-107 Identities = 200/200 (100%) Strand = Plus / Plus Query: 1 atgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7156 atgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtc 7215 Query: 61 aagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7216 aagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccag 7275 Query: 121 gatgcgatgaagactggttccttctacggttagaaaattctccatacacacccaccatct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7276 gatgcgatgaagactggttccttctacggttagaaaattctccatacacacccaccatct 7335 Query: 181 cttgctgcataggaggaggt 200 |||||||||||||||||||| Sbjct: 7336 cttgctgcataggaggaggt 7355 Score = 73.8 bits (37), Expect = 4e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 22 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagct 74 |||||||| |||||||| |||||||||||||| || ||||||||||||||||| Sbjct: 3909 gagtacggccacatgctggtccaggagcaggagaacgtcaagcgtgtgcagct 3961
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 448 bits (226), Expect = e-123 Identities = 229/230 (99%) Strand = Plus / Plus Query: 198 ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1165 ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 1224 Query: 258 aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1225 aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 1284 Query: 318 tgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgattgc 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1285 tgccacttttaatatctgatgttttacctacctaagtccgcatcgcatccaagcgattgc 1344 Query: 378 tgggcatgttttgttaatatatctctaaatatattgagtatacccatttg 427 |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 1345 tgggcatgttttgttaatatatctctaaatatattgtgtatacccatttg 1394 Score = 297 bits (150), Expect = 2e-77 Identities = 150/150 (100%) Strand = Plus / Plus Query: 1 atgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1018 atgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtc 1077 Query: 61 aagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1078 aagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccag 1137 Query: 121 gatgcgatgaagactggttccttctacggt 150 |||||||||||||||||||||||||||||| Sbjct: 1138 gatgcgatgaagactggttccttctacggt 1167
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 438 bits (221), Expect = e-120 Identities = 352/392 (89%), Gaps = 9/392 (2%) Strand = Plus / Plus Query: 1 atgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtc 60 ||||| || |||||| |||| |||||||| |||||||| ||||||||||||||||||||| Sbjct: 1204 atgacggtggagaagttgctggagtacggccacatgcttgtccaggagcaggacaatgtc 1263 Query: 61 aagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccag 120 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| || Sbjct: 1264 aagcgtgtgcagcttgcggacacttacatgagccaggcagctctgggtgatgcgaacaag 1323 Query: 121 gatgcgatgaagactggttccttctacggttagaaaattctccatacacacccaccatct 180 ||||| ||||||||||||||||||||||||||||| | ||| ||||||| ||||||||| Sbjct: 1324 gatgccatgaagactggttccttctacggttagaacactcttcatacac--ccaccatct 1381 Query: 181 cttgctgcataggaggaggtaaaggagcacagcaaggtactttgcccgtgccggaaggtt 240 ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 1382 cttgctgcataggaggaggtaaaggagcacaacaaggcactttgcctgtgccggaaggtt 1441 Query: 241 gcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcc 300 | ||||||| |||||||||||| ||||||||| || |||||||||||||||||||||| Sbjct: 1442 gtaccgaccgggatgccaagaacttcgacccaaccgcgaggagcgacgacggcagctgcc 1501 Query: 301 tttacaccttttaagcatgccacttttaata-tctgatgttttac-----ctacctaag- 353 |||||||||||||||||||||||||| | || |||||||||| || |||||||| Sbjct: 1502 tttacaccttttaagcatgccactttaattattctgatgtttcactctttgtacctaagc 1561 Query: 354 tccgcatcgcatccaagcgattgctgggcatg 385 ||||||||||| ||||||| ||||||||||| Sbjct: 1562 accgcatcgcatacaagcgactgctgggcatg 1593
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 333 bits (168), Expect = 3e-88 Identities = 171/172 (99%) Strand = Plus / Plus Query: 1 atgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 137 atgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtc 196 Query: 61 aagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 aagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccag 256 Query: 121 gatgcgatgaagactggttccttctacggttagaaaattctccatacacacc 172 ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 257 gatgcgatgaagactggttccttctacggttagaacattctccatacacacc 308
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 210 bits (106), Expect = 3e-51 Identities = 139/150 (92%) Strand = Plus / Plus Query: 1 atgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtc 60 ||||| || |||||| |||| |||||||| |||||||| ||||||||||||||||||||| Sbjct: 1214 atgacggtggagaagttgctggagtacggccacatgcttgtccaggagcaggacaatgtc 1273 Query: 61 aagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccag 120 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| || Sbjct: 1274 aagcgtgtgcagcttgcggacacttacatgagccaggcagctctgggtgatgcgaacaag 1333 Query: 121 gatgcgatgaagactggttccttctacggt 150 ||||| |||||||||||||||||||||||| Sbjct: 1334 gatgccatgaagactggttccttctacggt 1363 Score = 176 bits (89), Expect = 4e-41 Identities = 119/129 (92%) Strand = Plus / Plus Query: 198 ggtaaaggagcacagcaaggtactttgcccgtgccggaaggttgcaccgaccaaaatgcc 257 |||||||||||||| ||||| |||||||| |||||||||||||| ||||||| ||||| Sbjct: 1361 ggtaaaggagcacaacaaggcactttgcctgtgccggaaggttgtaccgaccgggatgcc 1420 Query: 258 aagaactacgacccaacggcaaggagcgacgacggcagctgcctttacaccttttaagca 317 ||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 1421 aagaacttcgacccaaccgcgaggagcgacgacggcagctgcctttacaccttttaagca 1480 Query: 318 tgccacttt 326 ||||||||| Sbjct: 1481 tgccacttt 1489
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Plus Query: 191 aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 247 ||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| Sbjct: 1385 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1444 Query: 248 ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 307 || ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1445 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1504 Query: 308 cttttaagca 317 |||||||||| Sbjct: 1505 cttttaagca 1514 Score = 83.8 bits (42), Expect = 4e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 22 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 81 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 1181 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 1240 Query: 82 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 141 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 1241 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 1300 Query: 142 ttctacggtt 151 |||||||||| Sbjct: 1301 ttctacggtt 1310
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Plus Query: 191 aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 247 ||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| Sbjct: 1423 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1482 Query: 248 ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 307 || ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1483 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1542 Query: 308 cttttaagca 317 |||||||||| Sbjct: 1543 cttttaagca 1552 Score = 83.8 bits (42), Expect = 4e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 22 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 81 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 1219 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 1278 Query: 82 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 141 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 1279 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 1338 Query: 142 ttctacggtt 151 |||||||||| Sbjct: 1339 ttctacggtt 1348
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Plus Query: 191 aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 247 ||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| Sbjct: 1422 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1481 Query: 248 ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 307 || ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1482 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1541 Query: 308 cttttaagca 317 |||||||||| Sbjct: 1542 cttttaagca 1551 Score = 83.8 bits (42), Expect = 4e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 22 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 81 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 1218 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 1277 Query: 82 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 141 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 1278 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 1337 Query: 142 ttctacggtt 151 |||||||||| Sbjct: 1338 ttctacggtt 1347
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Plus Query: 191 aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 247 ||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| Sbjct: 1206 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1265 Query: 248 ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 307 || ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1266 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1325 Query: 308 cttttaagca 317 |||||||||| Sbjct: 1326 cttttaagca 1335 Score = 83.8 bits (42), Expect = 4e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 22 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 81 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 1002 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 1061 Query: 82 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 141 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 1062 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 1121 Query: 142 ttctacggtt 151 |||||||||| Sbjct: 1122 ttctacggtt 1131
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 135 bits (68), Expect = 1e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Plus Query: 191 aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 247 ||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| Sbjct: 1427 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1486 Query: 248 ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 307 || ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1487 ccctgttgccaagaacttcgacccaacggcgaggagcgacgacggcagctgcctttacac 1546 Query: 308 cttttaagca 317 |||||||||| Sbjct: 1547 cttttaagca 1556 Score = 83.8 bits (42), Expect = 4e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 22 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 81 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 1223 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 1282 Query: 82 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 141 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 1283 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 1342 Query: 142 ttctacggtt 151 |||||||||| Sbjct: 1343 ttctacggtt 1352
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 223 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 282 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 107252 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 107193 Query: 283 gcgacgacggcagctgcctttacaccttttaagca 317 ||||||||||||||||||||||||||||||||||| Sbjct: 107192 gcgacgacggcagctgcctttacaccttttaagca 107158 Score = 89.7 bits (45), Expect = 7e-15 Identities = 111/133 (83%) Strand = Plus / Minus Query: 22 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 81 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 108438 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 108379 Query: 82 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 141 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 108378 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 108319 Query: 142 ttctacggttaga 154 ||||||||||||| Sbjct: 108318 ttctacggttaga 108306 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 225 cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 284 |||||||||| || |||||||||||| ||| ||||||||||| || || |||||| Sbjct: 112127 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 112068 Query: 285 gacgacggcagctgc 299 ||||||||||||||| Sbjct: 112067 gacgacggcagctgc 112053
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 223 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 282 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 29133 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 29074 Query: 283 gcgacgacggcagctgcctttacaccttttaagca 317 ||||||||||||||||||||||||||||||||||| Sbjct: 29073 gcgacgacggcagctgcctttacaccttttaagca 29039 Score = 89.7 bits (45), Expect = 7e-15 Identities = 111/133 (83%) Strand = Plus / Minus Query: 22 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 81 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 30315 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 30256 Query: 82 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 141 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 30255 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 30196 Query: 142 ttctacggttaga 154 ||||||||||||| Sbjct: 30195 ttctacggttaga 30183 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 225 cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 284 |||||||||| || |||||||||||| ||| ||||||||||| || || |||||| Sbjct: 34004 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 33945 Query: 285 gacgacggcagctgc 299 ||||||||||||||| Sbjct: 33944 gacgacggcagctgc 33930
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 223 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 282 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 1426 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1485 Query: 283 gcgacgacggcagctgcctttacaccttttaagca 317 ||||||||||||||||||||||||||||||||||| Sbjct: 1486 gcgacgacggcagctgcctttacaccttttaagca 1520 Score = 83.8 bits (42), Expect = 4e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 22 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 81 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 1187 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 1246 Query: 82 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 141 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 1247 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 1306 Query: 142 ttctacggtt 151 |||||||||| Sbjct: 1307 ttctacggtt 1316
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 223 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 282 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 1336 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1395 Query: 283 gcgacgacggcagctgcctttacaccttttaagca 317 ||||||||||||||||||||||||||||||||||| Sbjct: 1396 gcgacgacggcagctgcctttacaccttttaagca 1430 Score = 79.8 bits (40), Expect = 7e-12 Identities = 106/128 (82%) Strand = Plus / Plus Query: 22 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 81 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 1182 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 1241 Query: 82 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 141 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 1242 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 1301 Query: 142 ttctacgg 149 |||||||| Sbjct: 1302 ttctacgg 1309
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 223 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 282 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 28302395 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 28302336 Query: 283 gcgacgacggcagctgcctttacaccttttaagca 317 ||||||||||||||||||||||||||||||||||| Sbjct: 28302335 gcgacgacggcagctgcctttacaccttttaagca 28302301 Score = 89.7 bits (45), Expect = 7e-15 Identities = 111/133 (83%) Strand = Plus / Minus Query: 22 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 81 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 28303577 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 28303518 Query: 82 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 141 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 28303517 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 28303458 Query: 142 ttctacggttaga 154 ||||||||||||| Sbjct: 28303457 ttctacggttaga 28303445 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 225 cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 284 |||||||||| || |||||||||||| ||| ||||||||||| || || |||||| Sbjct: 28307266 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 28307207 Query: 285 gacgacggcagctgc 299 ||||||||||||||| Sbjct: 28307206 gacgacggcagctgc 28307192
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 223 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 282 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 28284844 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 28284785 Query: 283 gcgacgacggcagctgcctttacaccttttaagca 317 ||||||||||||||||||||||||||||||||||| Sbjct: 28284784 gcgacgacggcagctgcctttacaccttttaagca 28284750 Score = 89.7 bits (45), Expect = 7e-15 Identities = 111/133 (83%) Strand = Plus / Minus Query: 22 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 81 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 28286026 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 28285967 Query: 82 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 141 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 28285966 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 28285907 Query: 142 ttctacggttaga 154 ||||||||||||| Sbjct: 28285906 ttctacggttaga 28285894 Score = 54.0 bits (27), Expect = 4e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 225 cccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagc 284 |||||||||| || |||||||||||| ||| ||||||||||| || || |||||| Sbjct: 28289715 cccgtgccggcgggatgcaccgaccaacgcgccgccaactacgaccctaccgccaggagc 28289656 Query: 285 gacgacggcagctgc 299 ||||||||||||||| Sbjct: 28289655 gacgacggcagctgc 28289641
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 133 bits (67), Expect = 5e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 223 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 282 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 1371 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 1430 Query: 283 gcgacgacggcagctgcctttacaccttttaagca 317 ||||||||||||||||||||||||||||||||||| Sbjct: 1431 gcgacgacggcagctgcctttacaccttttaagca 1465 Score = 79.8 bits (40), Expect = 7e-12 Identities = 106/128 (82%) Strand = Plus / Plus Query: 22 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 81 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 1217 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 1276 Query: 82 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 141 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 1277 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 1336 Query: 142 ttctacgg 149 |||||||| Sbjct: 1337 ttctacgg 1344
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 2e-24 Identities = 82/89 (92%) Strand = Plus / Plus Query: 223 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 282 |||| |||||||||||||||||||||| ||||||||||| |||||||||||| |||| Sbjct: 5 tgcctgtgccggaaggttgcaccgaccctgttgccaagaacttcgacccaacggcgagga 64 Query: 283 gcgacgacggcagctgcctttacaccttt 311 ||||||||||||||||||||||||||||| Sbjct: 65 gcgacgacggcagctgcctttacaccttt 93
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 119 bits (60), Expect = 8e-24 Identities = 114/130 (87%), Gaps = 4/130 (3%) Strand = Plus / Plus Query: 191 aggaggaggtaaaggagcacagcaag---gtactttgcccgtgccggaaggttgcaccga 247 ||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||| Sbjct: 1434 aggaggagggcaaggagcacagcaagcaggtaacctgcctgtgccggaaggttgcaccga 1493 Query: 248 ccaaaatgccaagaactacgacccaacggcaaggagcgacgacggcagctgcctttacac 307 || ||||||||| | |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1494 ccctgttgccaagaatt-cgacccaacggcgaggagcgacgacggcagctgcctttacac 1552 Query: 308 cttttaagca 317 |||||||||| Sbjct: 1553 cttttaagca 1562 Score = 83.8 bits (42), Expect = 4e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 22 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 81 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 1230 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 1289 Query: 82 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 141 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 1290 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 1349 Query: 142 ttctacggtt 151 |||||||||| Sbjct: 1350 ttctacggtt 1359
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 2e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 223 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 282 |||| |||||||||||||| |||||| ||||||||||| |||||||||||| |||| Sbjct: 41 tgcctgtgccggaaggttgacccgaccctgttgccaagaacttcgacccaacggcgagga 100 Query: 283 gcgacgacggcagctgcctttacaccttttaagca 317 |||||||||||||||||||||| | |||||||||| Sbjct: 101 gcgacgacggcagctgcctttaaaacttttaagca 135
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 89.7 bits (45), Expect = 7e-15 Identities = 117/141 (82%) Strand = Plus / Plus Query: 13 aagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcag 72 |||||||| |||||||| ||||||| || ||||||||||| || || ||| | |||||| Sbjct: 867 aagctgctggagtacggcaacatgctggtgcaggagcaggagaacgtgaagagggtgcag 926 Query: 73 cttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaag 132 || || |||| ||| ||||| |||||||||| ||||| || || ||||| ||||| ||| Sbjct: 927 ctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcgatcaag 986 Query: 133 actggttccttctacggttag 153 ||||| |||||||| |||||| Sbjct: 987 actggatccttctatggttag 1007 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 234 gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 293 |||||||| ||||||| ||||||| |||| |||||| ||||| ||||||||||| ||| Sbjct: 1076 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1135 Query: 294 agctgcctttacac 307 |||||||| ||||| Sbjct: 1136 agctgcctgtacac 1149
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 83.8 bits (42), Expect = 4e-13 Identities = 114/138 (82%) Strand = Plus / Plus Query: 8 tcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtg 67 |||||||||| | |||||||| |||||||| || ||||||||| || |||||||||| Sbjct: 782 tcgagaagctcttggagtacggacacatgctggtggcggagcaggagaacgtcaagcgtg 841 Query: 68 tgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcga 127 ||||||||||||||| ||| | | | |||| ||||| ||||| || ||| |||| || | Sbjct: 842 tgcagcttgctgacaagtacctcaacgaggctgctcttggtgaagccaacgaggacgcca 901 Query: 128 tgaagactggttccttct 145 |||||||||| ||||||| Sbjct: 902 tgaagactggctccttct 919
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 83.8 bits (42), Expect = 4e-13 Identities = 114/138 (82%) Strand = Plus / Plus Query: 8 tcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtg 67 |||||||||| | |||||||| |||||||| || ||||||||| || |||||||||| Sbjct: 1177 tcgagaagctcttggagtacggacacatgctggtggcggagcaggagaacgtcaagcgtg 1236 Query: 68 tgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcga 127 ||||||||||||||| ||| | | | |||| ||||| ||||| || ||| |||| || | Sbjct: 1237 tgcagcttgctgacaagtacctcaacgaggctgctcttggtgaagccaacgaggacgcca 1296 Query: 128 tgaagactggttccttct 145 |||||||||| ||||||| Sbjct: 1297 tgaagactggctccttct 1314
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 83.8 bits (42), Expect = 4e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 22 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 81 |||||||| ||||||| || |||||||||| || ||||||||||||||||| ||||| Sbjct: 436 gagtacggatacatgcttgtgaaggagcaggagaacgtcaagcgtgtgcagctggctgag 495 Query: 82 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 141 ||| ||||| |||| ||||| ||||| |||||| || || ||||||||||||||| Sbjct: 496 cagtacttgagcgaggctgctcttggtgacgctaactccgacgccatgaagactggttcc 555 Query: 142 ttctacggtt 151 |||||||||| Sbjct: 556 ttctacggtt 565
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 13 aagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcag 72 |||||||| |||||||| ||||||| || ||||||||||| || || ||| | |||||| Sbjct: 1061 aagctgctggagtacggcaacatgctggtgcaggagcaggagaacgtgaagagggtgcag 1120 Query: 73 cttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaag 132 || || |||| ||| ||||| |||||||||| ||||| || || ||||| ||||| ||| Sbjct: 1121 ctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcgatcaag 1180 Query: 133 actggttccttcta 146 ||||| |||||||| Sbjct: 1181 actggatccttcta 1194 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 234 gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 293 |||||||| ||||||| ||||||| |||| |||||| ||||| ||||||||||| ||| Sbjct: 1232 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1291 Query: 294 agctgcctttacac 307 |||||||| ||||| Sbjct: 1292 agctgcctgtacac 1305
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 83.8 bits (42), Expect = 4e-13 Identities = 114/138 (82%) Strand = Plus / Plus Query: 8 tcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtg 67 |||||||||| | |||||||| |||||||| || ||||||||| || |||||||||| Sbjct: 1177 tcgagaagctcttggagtacggacacatgctggtggcggagcaggagaacgtcaagcgtg 1236 Query: 68 tgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcga 127 ||||||||||||||| ||| | | | |||| ||||| ||||| || ||| |||| || | Sbjct: 1237 tgcagcttgctgacaagtacctcaacgaggctgctcttggtgaagccaacgaggacgcca 1296 Query: 128 tgaagactggttccttct 145 |||||||||| ||||||| Sbjct: 1297 tgaagactggctccttct 1314
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 7e-12 Identities = 97/116 (83%) Strand = Plus / Plus Query: 13 aagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcag 72 |||||||||||||| || ||||||| |||||||||||||||||||| ||| | || || Sbjct: 3 aagctgctagagtatggaaacatgcttgtccaggagcaggacaatgtgaagagagttcaa 62 Query: 73 cttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgat 128 || || ||||| ||| ||||||| |||||||| || ||||| ||| ||||| |||| Sbjct: 63 ctggcagacacgtacttgagccaagcagctcttggagatgcaaacgaggattcgat 118
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 223 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 282 |||| |||||||||||||||||||||| |||||| |||| ||||||||||| | || Sbjct: 4541319 tgcctgtgccggaaggttgcaccgaccctgttgccaacaactttgacccaacggcgatga 4541378 Query: 283 gcgacgacggcagctgcctttacaccttttaagca 317 || ||||| ||| ||||||||||||||| |||||| Sbjct: 4541379 gcaacgacagcatctgcctttacaccttctaagca 4541413
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 223 tgcccgtgccggaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaagga 282 |||| |||||||||||||||||||||| |||||| |||| ||||||||||| | || Sbjct: 84693 tgcctgtgccggaaggttgcaccgaccctgttgccaacaactttgacccaacggcgatga 84752 Query: 283 gcgacgacggcagctgcctttacaccttttaagca 317 || ||||| ||| ||||||||||||||| |||||| Sbjct: 84753 gcaacgacagcatctgcctttacaccttctaagca 84787
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 73.8 bits (37), Expect = 4e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 22 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagct 74 |||||||| |||||||| |||||||||||||| || ||||||||||||||||| Sbjct: 1340 gagtacggccacatgctggtccaggagcaggagaacgtcaagcgtgtgcagct 1392
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 234 gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 293 |||||||| ||||||| ||||||| |||| |||||| ||||| ||||||||||| ||| Sbjct: 1377 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1436 Query: 294 agctgcctttacac 307 |||||||| ||||| Sbjct: 1437 agctgcctgtacac 1450
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 234 gaaggttgcaccgaccaaaatgccaagaactacgacccaacggcaaggagcgacgacggc 293 |||||||| ||||||| ||||||| |||| |||||| ||||| ||||||||||| ||| Sbjct: 1202 gaaggttgtaccgaccggaatgccaccaacttcgacccgacggccaggagcgacgatggc 1261 Query: 294 agctgcctttacac 307 |||||||| ||||| Sbjct: 1262 agctgcctgtacac 1275
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 8 tcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtg 67 |||||||||| | |||||||| |||||||| |||||||||||||| || || ||||| | Sbjct: 1176 tcgagaagctcatggagtacggccacatgctggtccaggagcaggagaacgtgaagcgcg 1235 Query: 68 tgcagct 74 ||||||| Sbjct: 1236 tgcagct 1242
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Plus Query: 76 gctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgc 125 ||||||| |||||||| |||| || || |||||||||||||||||||| Sbjct: 1306 gctgacaagtacatgagtgaggctgcccttggtgatgctaaccaggatgc 1355
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 91 agccaggcagctctgggtgatg 112 |||||||||||||||||||||| Sbjct: 51254 agccaggcagctctgggtgatg 51275
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence Length = 153155 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 391 ttaatatatctctaaatatatt 412 |||||||||||||||||||||| Sbjct: 67963 ttaatatatctctaaatatatt 67942
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence Length = 177245 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 gttaatatatctctaaatata 410 ||||||||||||||||||||| Sbjct: 12335 gttaatatatctctaaatata 12315
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence Length = 98660 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 390 gttaatatatctctaaatata 410 ||||||||||||||||||||| Sbjct: 66367 gttaatatatctctaaatata 66387
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 321 cacttttaatatctgatgttt 341 ||||||||||||||||||||| Sbjct: 3040420 cacttttaatatctgatgttt 3040440
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 acccaccatctcttgctgcat 190 ||||||||||||||||||||| Sbjct: 63550 acccaccatctcttgctgcat 63530
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 46 gagcaggacaatgtcaagcgtgtgcagct 74 |||||||| ||||||||||| |||||||| Sbjct: 2105 gagcaggagaatgtcaagcgcgtgcagct 2133
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 321 cacttttaatatctgatgttt 341 ||||||||||||||||||||| Sbjct: 3040365 cacttttaatatctgatgttt 3040385
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 321 cacttttaatatctgatgttt 341 ||||||||||||||||||||| Sbjct: 114423 cacttttaatatctgatgttt 114403
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence Length = 105452 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 390 gttaatatatctctaaatata 410 ||||||||||||||||||||| Sbjct: 6197 gttaatatatctctaaatata 6217
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 tgcataggaggaggtaaagg 205 |||||||||||||||||||| Sbjct: 46378 tgcataggaggaggtaaagg 46359
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 tgagccaggcagctctgggtgatg 112 ||||||||||||||||||| |||| Sbjct: 1565 tgagccaggcagctctgggcgatg 1542
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 tgcataggaggaggtaaagg 205 |||||||||||||||||||| Sbjct: 1656 tgcataggaggaggtaaagg 1637
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 40.1 bits (20), Expect = 5.9 Identities = 68/84 (80%) Strand = Plus / Plus Query: 33 catgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgag 92 |||||| |||||||||||||| || |||||| | || || | ||||||| |||||| Sbjct: 1263 catgcttgtccaggagcaggagaacgtcaagagagttcaattagctgacaaatacatgtc 1322 Query: 93 ccaggcagctctgggtgatgctaa 116 | |||| ||||| ||||||||||| Sbjct: 1323 cgaggctgctcttggtgatgctaa 1346
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 tgcataggaggaggtaaagg 205 |||||||||||||||||||| Sbjct: 32964 tgcataggaggaggtaaagg 32945
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 agcgtgtgcagcttgctgac 81 |||||||||||||||||||| Sbjct: 223 agcgtgtgcagcttgctgac 242
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 atgccacttttaatatctga 336 |||||||||||||||||||| Sbjct: 141077 atgccacttttaatatctga 141058
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 atgccacttttaatatctga 336 |||||||||||||||||||| Sbjct: 142583 atgccacttttaatatctga 142564
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 atgccacttttaatatctga 336 |||||||||||||||||||| Sbjct: 95911 atgccacttttaatatctga 95930
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 tgagccaggcagctctgggtgatg 112 ||||||||||||||||||| |||| Sbjct: 1619 tgagccaggcagctctgggcgatg 1596
>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166149 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 aatatatctctaaatatatt 412 |||||||||||||||||||| Sbjct: 30473 aatatatctctaaatatatt 30454
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 caggagcaggacaatgtcaa 62 |||||||||||||||||||| Sbjct: 126419 caggagcaggacaatgtcaa 126438
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 tgagccaggcagctctgggtgatg 112 ||||||||||||||||||| |||| Sbjct: 1935 tgagccaggcagctctgggcgatg 1912
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 281 gagcgacgacggcagctgcctttacacc 308 |||||||||||||||| |||| |||||| Sbjct: 5133 gagcgacgacggcagcagcctgtacacc 5160
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 365 tccaagcgattgctgggcatgttt 388 ||||| |||||||||||||||||| Sbjct: 41715 tccaatcgattgctgggcatgttt 41692
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 tgcataggaggaggtaaagg 205 |||||||||||||||||||| Sbjct: 34681 tgcataggaggaggtaaagg 34662
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 tgagccaggcagctctgggtgatg 112 ||||||||||||||||||| |||| Sbjct: 1659 tgagccaggcagctctgggcgatg 1636
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 tgagccaggcagctctgggtgatg 112 ||||||||||||||||||| |||| Sbjct: 2026 tgagccaggcagctctgggcgatg 2003
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 tgagccaggcagctctgggtgatg 112 ||||||||||||||||||| |||| Sbjct: 1935 tgagccaggcagctctgggcgatg 1912
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 tacaccttttaagcatgcca 322 |||||||||||||||||||| Sbjct: 78254 tacaccttttaagcatgcca 78235
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 caggagcaggacaatgtcaa 62 |||||||||||||||||||| Sbjct: 106979 caggagcaggacaatgtcaa 106960
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 tgagccaggcagctctgggtgatg 112 ||||||||||||||||||| |||| Sbjct: 1619 tgagccaggcagctctgggcgatg 1596
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 gaggaggtaaaggagcacagcaag 216 |||||||||||||||| ||||||| Sbjct: 625 gaggaggtaaaggagcccagcaag 648
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 tgcataggaggaggtaaagg 205 |||||||||||||||||||| Sbjct: 27736 tgcataggaggaggtaaagg 27755
>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18, complete sequence Length = 174701 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 aatatatctctaaatatatt 412 |||||||||||||||||||| Sbjct: 62485 aatatatctctaaatatatt 62504
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 agcatgccacttttaatatctgat 337 |||||| ||||||||||||||||| Sbjct: 127852 agcatggcacttttaatatctgat 127875 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,467,029 Number of Sequences: 3902068 Number of extensions: 3467029 Number of successful extensions: 69359 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 69084 Number of HSP's gapped (non-prelim): 226 length of query: 439 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 417 effective length of database: 17,147,199,772 effective search space: 7150382304924 effective search space used: 7150382304924 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
