No.
Definition
Score (bits)
E Value
1 dbj|AK069141.1| Oryza sativa (japonica cultivar-group) cDNA clon...
515
e-143
2 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
117
4e-23
3 dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic D...
117
4e-23
4 dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic D...
117
4e-23
5 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
44
0.52
6 gb|AC165171.2| Zea mays clone CH201-145P10, complete sequence
44
0.52
7 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
44
0.52
8 gb|AC134240.2| Oryza sativa (japonica cultivar-group) chromosome...
44
0.52
9 gb|AC104215.11| Mus musculus chromosome 7, clone RP23-44I18, com...
42
2.0
10 ref|XM_610035.2| PREDICTED: Bos taurus similar to Liprin-alpha 4...
42
2.0
11 gb|AC116683.7| Mus musculus chromosome 7, clone RP24-472H13, com...
42
2.0
12 gb|BT013662.1| Lycopersicon esculentum clone 132481F, mRNA sequence
40
8.1
13 gb|AC134879.3| Homo sapiens BAC clone RP11-295P22 from Y, comple...
40
8.1
14 ref|XM_917520.2| PREDICTED: Mus musculus similar to Spectrin bet...
40
8.1
15 emb|AL033524.11|HS1090E8 Human DNA sequence from clone RP5-1090E...
40
8.1
16 emb|CR812469.6| Zebrafish DNA sequence from clone DKEY-286F3 in ...
40
8.1
17 dbj|AB246912.1| Hemerocallis fulva x Hemerocallis citrina DNA, m...
40
8.1
18 gb|AC084212.17| Homo sapiens 3 BAC RP11-109B8 (Roswell Park Canc...
40
8.1
19 gb|AC015476.10| Homo sapiens, clone RP11-16G11, complete sequence
40
8.1
20 gb|AC104233.2| Homo sapiens chromosome 8, clone RP11-3G20, compl...
40
8.1
21 gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1)...
40
8.1
22 gb|AC122017.5| Mus musculus BAC clone RP24-361J4 from 7, complet...
40
8.1
23 emb|AL833774.4| Mouse DNA sequence from clone RP23-383I16 on chr...
40
8.1
24 dbj|AP005360.2| Homo sapiens genomic DNA, chromosome 8q23, clone...
40
8.1
>dbj|AP008212.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 117 bits (59), Expect = 4e-23
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 94 cagcagacgatggtggagatgttcccgctgaaatcggcagacgccgcctacggcaagatc 153
|||||||| |||||||||||||||||||||||||||| || |||||||| || ||||||
Sbjct: 12189414 cagcagaccatggtggagatgttcccgctgaaatcggaggatgccgcctatggtaagatc 12189473
Query: 154 agcgggatggtgtccacgctaggggaccctttcacaaagatcatcacccccaagg 208
||||||||| ||||||| || || || || ||||| |||||||||| ||||||||
Sbjct: 12189474 agcgggatgctgtccacactcggcgatccgttcaccaagatcatcagccccaagg 12189528
Score = 117 bits (59), Expect = 4e-23
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 2 gggtgcagaggacgctggtggaggcatgggggctgatccgtgagaccttcgtagacccca 61
||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct: 12189198 gggtgcagaggacgctggtggaggcgtgggggctgatccgtgagaccttcgtggatccca 12189257
Query: 62 ccttcaaccaccaag 76
||||||| |||||||
Sbjct: 12189258 ccttcaatcaccaag 12189272
Score = 93.7 bits (47), Expect = 6e-16
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 374 gggaatagtgttttagggttggacgtagaagctgtggctcagagacttagaggtcgtgct 433
||||| ||||||| |||||||| | |||||||| |||||||||||||||||||||| |
Sbjct: 12190519 gggaagagtgtttctgggttggatggagaagctgcagctcagagacttagaggtcgtgtt 12190578
Query: 434 ggaacgactgtggaagtgaaactgttggatg 464
||||| |||||| |||||||| |||||||||
Sbjct: 12190579 ggaacaactgtgaaagtgaaagtgttggatg 12190609
Score = 83.8 bits (42), Expect = 6e-13
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 504 aggtccagctatctcgtgaggtaatcaatctttcacctctatcaac 549
|||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 12191028 aggtccagctatctcgtgaggttatcaatctttcacctctatcaac 12191073
Score = 65.9 bits (33), Expect = 1e-07
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 295 gcttgttatgaactgcattgacggaggcccagccgacagagcaggcatacacgaaggcga 354
|||||||||| |||||||||| || |||||||| || |||||||| | || | ||||||
Sbjct: 12189793 gcttgttatggactgcattgaaggtggcccagcagatcgagcaggcctgcatggaggcga 12189852
Query: 355 tgagctagttgagatcaatgg 375
||| |||||||||||| ||||
Sbjct: 12189853 tgaactagttgagatcgatgg 12189873
Score = 50.1 bits (25), Expect = 0.008
Identities = 47/53 (88%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 206 aggaatatcatgagtttcaagatcggaagcgatgggaatttgcaaggggttgg 258
|||||||||| |||||||| ||| ||||||||||||| | | |||||||||||
Sbjct: 12189624 aggaatatca-gagtttcaggattggaagcgatgggagtgtccaaggggttgg 12189675
>dbj|AP003543.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0592B08
Length = 131096
Score = 117 bits (59), Expect = 4e-23
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 94 cagcagacgatggtggagatgttcccgctgaaatcggcagacgccgcctacggcaagatc 153
|||||||| |||||||||||||||||||||||||||| || |||||||| || ||||||
Sbjct: 26436 cagcagaccatggtggagatgttcccgctgaaatcggaggatgccgcctatggtaagatc 26495
Query: 154 agcgggatggtgtccacgctaggggaccctttcacaaagatcatcacccccaagg 208
||||||||| ||||||| || || || || ||||| |||||||||| ||||||||
Sbjct: 26496 agcgggatgctgtccacactcggcgatccgttcaccaagatcatcagccccaagg 26550
Score = 117 bits (59), Expect = 4e-23
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 2 gggtgcagaggacgctggtggaggcatgggggctgatccgtgagaccttcgtagacccca 61
||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct: 26220 gggtgcagaggacgctggtggaggcgtgggggctgatccgtgagaccttcgtggatccca 26279
Query: 62 ccttcaaccaccaag 76
||||||| |||||||
Sbjct: 26280 ccttcaatcaccaag 26294
Score = 93.7 bits (47), Expect = 6e-16
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 374 gggaatagtgttttagggttggacgtagaagctgtggctcagagacttagaggtcgtgct 433
||||| ||||||| |||||||| | |||||||| |||||||||||||||||||||| |
Sbjct: 27541 gggaagagtgtttctgggttggatggagaagctgcagctcagagacttagaggtcgtgtt 27600
Query: 434 ggaacgactgtggaagtgaaactgttggatg 464
||||| |||||| |||||||| |||||||||
Sbjct: 27601 ggaacaactgtgaaagtgaaagtgttggatg 27631
Score = 83.8 bits (42), Expect = 6e-13
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 504 aggtccagctatctcgtgaggtaatcaatctttcacctctatcaac 549
|||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 28050 aggtccagctatctcgtgaggttatcaatctttcacctctatcaac 28095
Score = 65.9 bits (33), Expect = 1e-07
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 295 gcttgttatgaactgcattgacggaggcccagccgacagagcaggcatacacgaaggcga 354
|||||||||| |||||||||| || |||||||| || |||||||| | || | ||||||
Sbjct: 26815 gcttgttatggactgcattgaaggtggcccagcagatcgagcaggcctgcatggaggcga 26874
Query: 355 tgagctagttgagatcaatgg 375
||| |||||||||||| ||||
Sbjct: 26875 tgaactagttgagatcgatgg 26895
Score = 50.1 bits (25), Expect = 0.008
Identities = 47/53 (88%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 206 aggaatatcatgagtttcaagatcggaagcgatgggaatttgcaaggggttgg 258
|||||||||| |||||||| ||| ||||||||||||| | | |||||||||||
Sbjct: 26646 aggaatatca-gagtttcaggattggaagcgatgggagtgtccaaggggttgg 26697
>dbj|AP003507.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0468A12
Length = 143018
Score = 117 bits (59), Expect = 4e-23
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 94 cagcagacgatggtggagatgttcccgctgaaatcggcagacgccgcctacggcaagatc 153
|||||||| |||||||||||||||||||||||||||| || |||||||| || ||||||
Sbjct: 132203 cagcagaccatggtggagatgttcccgctgaaatcggaggatgccgcctatggtaagatc 132262
Query: 154 agcgggatggtgtccacgctaggggaccctttcacaaagatcatcacccccaagg 208
||||||||| ||||||| || || || || ||||| |||||||||| ||||||||
Sbjct: 132263 agcgggatgctgtccacactcggcgatccgttcaccaagatcatcagccccaagg 132317
Score = 117 bits (59), Expect = 4e-23
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 2 gggtgcagaggacgctggtggaggcatgggggctgatccgtgagaccttcgtagacccca 61
||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||
Sbjct: 131987 gggtgcagaggacgctggtggaggcgtgggggctgatccgtgagaccttcgtggatccca 132046
Query: 62 ccttcaaccaccaag 76
||||||| |||||||
Sbjct: 132047 ccttcaatcaccaag 132061
Score = 93.7 bits (47), Expect = 6e-16
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 374 gggaatagtgttttagggttggacgtagaagctgtggctcagagacttagaggtcgtgct 433
||||| ||||||| |||||||| | |||||||| |||||||||||||||||||||| |
Sbjct: 133308 gggaagagtgtttctgggttggatggagaagctgcagctcagagacttagaggtcgtgtt 133367
Query: 434 ggaacgactgtggaagtgaaactgttggatg 464
||||| |||||| |||||||| |||||||||
Sbjct: 133368 ggaacaactgtgaaagtgaaagtgttggatg 133398
Score = 83.8 bits (42), Expect = 6e-13
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 504 aggtccagctatctcgtgaggtaatcaatctttcacctctatcaac 549
|||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 133817 aggtccagctatctcgtgaggttatcaatctttcacctctatcaac 133862
Score = 65.9 bits (33), Expect = 1e-07
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 295 gcttgttatgaactgcattgacggaggcccagccgacagagcaggcatacacgaaggcga 354
|||||||||| |||||||||| || |||||||| || |||||||| | || | ||||||
Sbjct: 132582 gcttgttatggactgcattgaaggtggcccagcagatcgagcaggcctgcatggaggcga 132641
Query: 355 tgagctagttgagatcaatgg 375
||| |||||||||||| ||||
Sbjct: 132642 tgaactagttgagatcgatgg 132662
Score = 50.1 bits (25), Expect = 0.008
Identities = 47/53 (88%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 206 aggaatatcatgagtttcaagatcggaagcgatgggaatttgcaaggggttgg 258
|||||||||| |||||||| ||| ||||||||||||| | | |||||||||||
Sbjct: 132413 aggaatatca-gagtttcaggattggaagcgatgggagtgtccaaggggttgg 132464
>gb|AY530950.1 | Zea mays putative zinc finger protein (Z438D03.1), unknown (Z438D03.5),
epsilon-COP (Z438D03.6), putative kinase (Z438D03.7),
unknown (Z438D03.25), and C1-B73 (Z438D03.27) genes,
complete cds
Length = 185988
Score = 40.1 bits (20), Expect = 8.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 93 tcagcagacgatggtggagatgtt 116
||||||||||||| ||||||||||
Sbjct: 13065 tcagcagacgatgatggagatgtt 13088
>dbj|AP005360.2 | Homo sapiens genomic DNA, chromosome 8q23, clone: KB1529G8, complete
sequence
Length = 147788
Score = 40.1 bits (20), Expect = 8.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 402 aagctgtggctcagagactt 421
||||||||||||||||||||
Sbjct: 132754 aagctgtggctcagagactt 132773
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,031,394
Number of Sequences: 3902068
Number of extensions: 4031394
Number of successful extensions: 68693
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68572
Number of HSP's gapped (non-prelim): 119
length of query: 592
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 569
effective length of database: 17,143,297,704
effective search space: 9754536393576
effective search space used: 9754536393576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)