ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal38g24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EF2_SACCA (Q875Z2) Elongation factor 2 (EF-2) 31 3.1
2Y1861_MYCBO (P67672) Putative HTH-type transcriptional regulator... 31 4.0
3Y1830_MYCTU (P67671) Putative HTH-type transcriptional regulator... 31 4.0
4PMA2_ARATH (P19456) ATPase 2, plasma membrane-type (EC 3.6.3.6) ... 30 5.2
5ESAM_HUMAN (Q96AP7) Endothelial cell-selective adhesion molecule... 30 6.8
6IL18R_HUMAN (Q13478) Interleukin-18 receptor 1 precursor (IL1 re... 30 8.9
7PMA10_ARATH (Q43128) ATPase 10, plasma membrane-type (EC 3.6.3.6... 30 8.9
8PMA3_NICPL (Q08436) Plasma membrane ATPase 3 (EC 3.6.3.6) (Proto... 30 8.9
9PE2R4_RAT (P43114) Prostaglandin E2 receptor, EP4 subtype (Prost... 30 8.9

>EF2_SACCA (Q875Z2) Elongation factor 2 (EF-2)|
          Length = 842

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
 Frame = -1

Query: 652 HLQTGRSMYTPSFV-----ISTLK----RFMPEDRLSSVHGITLTSDGTSAVFDVPSAEV 500
           H+  G+S  T S V     IS  K    RFM   +     GIT+ S   S   ++P  +V
Sbjct: 27  HVDHGKSTLTDSLVQKAGIISAAKAGEARFMDTRKDEQERGITIKSTAISLYSEMPDEDV 86

Query: 499 QDYIQGAENAAGL 461
           +D  Q  E  A L
Sbjct: 87  KDIAQNTEGNAFL 99



to top

>Y1861_MYCBO (P67672) Putative HTH-type transcriptional regulator Mb1861|
          Length = 225

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = -1

Query: 649 LQTGRSMYTPSFVISTLKRFMPEDRLSSVHGITLTSDGTSAVFDVPSAEVQDYIQGAENA 470
           L TG S++     +  L++   +D    +  ITL SDGT+      + EV D +QG +  
Sbjct: 121 LDTGISLHNIRVAVDHLRQRGVQD----LANITLFSDGTTVYECTSAEEVVDLLQGGQGV 176

Query: 469 AGLTI 455
            G+ +
Sbjct: 177 FGIAV 181



to top

>Y1830_MYCTU (P67671) Putative HTH-type transcriptional regulator Rv1830/MT1879|
          Length = 225

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = -1

Query: 649 LQTGRSMYTPSFVISTLKRFMPEDRLSSVHGITLTSDGTSAVFDVPSAEVQDYIQGAENA 470
           L TG S++     +  L++   +D    +  ITL SDGT+      + EV D +QG +  
Sbjct: 121 LDTGISLHNIRVAVDHLRQRGVQD----LANITLFSDGTTVYECTSAEEVVDLLQGGQGV 176

Query: 469 AGLTI 455
            G+ +
Sbjct: 177 FGIAV 181



to top

>PMA2_ARATH (P19456) ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump|
           2)
          Length = 947

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = -1

Query: 661 TTLHLQTGRSMYTPSFVISTLKRFMPEDRLSS--VHGITLTSDGTSAVFDVPSAEVQDYI 488
           T   L  G +MY  S ++ T K    +  L+S  V  +   +DG + VF     E+   +
Sbjct: 520 TGRRLGMGTNMYPSSALLGTHK----DANLASIPVEELIEKADGFAGVFPEHKYEIVKKL 575

Query: 487 QGAENAAGLTIDEVKQLPALQERE 416
           Q  ++  G+T D V   PAL++ +
Sbjct: 576 QERKHIVGMTGDGVNDAPALKKAD 599



to top

>ESAM_HUMAN (Q96AP7) Endothelial cell-selective adhesion molecule precursor|
          Length = 390

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -1

Query: 658 TLHLQTGRSM-YTPSFVISTLKRFMPEDR-LSSVHGITLTSDGTSAVFDVPSAEVQDYIQ 485
           TLH +   S  +   FV+   K+   ED+ LS ++G+T +  G S V+ +PS  +   ++
Sbjct: 55  TLHGEVSSSQPWEVPFVMWFFKQKEKEDQVLSYINGVTTSKPGVSLVYSMPSRNLSLRLE 114

Query: 484 GAE 476
           G +
Sbjct: 115 GLQ 117



to top

>IL18R_HUMAN (Q13478) Interleukin-18 receptor 1 precursor (IL1 receptor-related|
           protein) (IL-1Rrp) (CDw218a antigen)
          Length = 541

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +3

Query: 3   LVLIRADN*GCMSRNNTTSKYTP**QWLSIRSNILHCFSLANLIVIISGAKH*QIKQNKN 182
           L +IR +   C +    TSK     ++  I     +  +L N   +    K   ++ NKN
Sbjct: 109 LNVIRRNKHSCFTERQVTSKIVEVKKFFQITCENSYYQTLVNSTSLYKNCKKLLLENNKN 168

Query: 183 PDTRRSQNFDD 215
           P  +++  F+D
Sbjct: 169 PTIKKNAEFED 179



to top

>PMA10_ARATH (Q43128) ATPase 10, plasma membrane-type (EC 3.6.3.6) (Proton pump|
           10)
          Length = 947

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 23/87 (26%), Positives = 37/87 (42%)
 Frame = -1

Query: 676 SMENHTTLHLQTGRSMYTPSFVISTLKRFMPEDRLSSVHGITLTSDGTSAVFDVPSAEVQ 497
           ++   T   L  G +MY  S   S L     E     V  +   +DG + VF     E+ 
Sbjct: 524 AIAKETGRRLGMGTNMYPSS---SLLGHNNDEHEAIPVDELIEMADGFAGVFPEHKYEIV 580

Query: 496 DYIQGAENAAGLTIDEVKQLPALQERE 416
             +Q  ++  G+T D V   PAL++ +
Sbjct: 581 KILQEMKHVVGMTGDGVNDAPALKKAD 607



to top

>PMA3_NICPL (Q08436) Plasma membrane ATPase 3 (EC 3.6.3.6) (Proton pump 3)|
          Length = 956

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = -1

Query: 661 TTLHLQTGRSMYTPSFVISTLKRFMPEDRLSS--VHGITLTSDGTSAVFDVPSAEVQDYI 488
           T   L  G +MY  S ++   K    ++ +S+  V  +   +DG + VF     E+   +
Sbjct: 525 TGRRLGMGTNMYPSSALLGQTK----DESISALPVDELIEKADGFAGVFPEHKYEIVKRL 580

Query: 487 QGAENAAGLTIDEVKQLPALQERE 416
           Q  ++  G+T D V   PAL++ +
Sbjct: 581 QARKHICGMTGDGVNDAPALKKAD 604



to top

>PE2R4_RAT (P43114) Prostaglandin E2 receptor, EP4 subtype (Prostanoid EP4|
           receptor) (PGE receptor, EP4 subtype)
          Length = 488

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = -1

Query: 631 MYTPSFVISTLKRFMPEDRLSSVHGITLTSDGTSAVFDVPSAEVQDYIQGAENAAGLTID 452
           +Y P    S+L     ++ L   HG+ LT   T+++  +  +E  D  QG ++ + L +D
Sbjct: 399 LYLPDLTESSLGG---KNLLPGTHGMGLTQADTTSLRTLRISETSDSSQGQDSESVLLVD 455

Query: 451 EV 446
           EV
Sbjct: 456 EV 457


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,138,413
Number of Sequences: 219361
Number of extensions: 1400214
Number of successful extensions: 3481
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3480
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top