ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal38g11 |
|---|---|
| Clone Library Name | barley_pub |
>RL44_GOSHI (Q96499) 60S ribosomal protein L44| Length = 104 Score = 33.5 bits (75), Expect = 0.17 Identities = 16/30 (53%), Positives = 16/30 (53%) Frame = +2 Query: 53 VNVPXXXXXXXXXXXXXXHTLHKVTQYKKG 142 VNVP HTLHKVTQYKKG Sbjct: 1 VNVPKTKKTYCKSKECRKHTLHKVTQYKKG 30
>RL44_ARATH (O23290) 60S ribosomal protein L44| Length = 104 Score = 32.7 bits (73), Expect = 0.28 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = +2 Query: 53 VNVPXXXXXXXXXXXXXXHTLHKVTQYKKG 142 VN+P HTLHKVTQYKKG Sbjct: 1 VNIPKTKNTYCKNKECKKHTLHKVTQYKKG 30
>RL44_PHARH (O59870) 60S ribosomal protein L44 (60S ribosomal protein L41)| Length = 105 Score = 30.8 bits (68), Expect = 1.1 Identities = 15/30 (50%), Positives = 15/30 (50%) Frame = +2 Query: 53 VNVPXXXXXXXXXXXXXXHTLHKVTQYKKG 142 VNVP HT HKVTQYKKG Sbjct: 1 VNVPKTRRTYCKGKACKKHTPHKVTQYKKG 30
>RL44_CRYNE (Q9HF88) 60S ribosomal protein L44 (60S ribosomal protein L41)| Length = 105 Score = 30.4 bits (67), Expect = 1.4 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +2 Query: 53 VNVPXXXXXXXXXXXXXXHTLHKVTQYKKG 142 VN+P HT HKVTQYKKG Sbjct: 1 VNIPKTRRTYCKGKACRKHTPHKVTQYKKG 30
>RL44_COPCI (Q9UWE4) 60S ribosomal protein L44 (60S ribosomal protein L41)| Length = 105 Score = 30.4 bits (67), Expect = 1.4 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +2 Query: 53 VNVPXXXXXXXXXXXXXXHTLHKVTQYKKG 142 VN+P HT HKVTQYKKG Sbjct: 1 VNIPKTRRTYCKGKTCKKHTPHKVTQYKKG 30
>RL44_SCHPO (Q9UTI8) 60S ribosomal protein L44| Length = 105 Score = 30.0 bits (66), Expect = 1.8 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +2 Query: 53 VNVPXXXXXXXXXXXXXXHTLHKVTQYKKG 142 VN+P HT+H+VTQYKKG Sbjct: 1 VNIPKTRKTYCPGKNCRKHTVHRVTQYKKG 30
>RL44Q_CANMA (P27074) 60S ribosomal protein L44 Q (L41) (L41 Q-type)| Length = 105 Score = 30.0 bits (66), Expect = 1.8 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +2 Query: 53 VNVPXXXXXXXXXXXXXXHTLHKVTQYKKG 142 VN+P HT+HKVTQYK G Sbjct: 1 VNIPKTRNTYCKGKGCRKHTIHKVTQYKSG 30
>RL44_BRUMA (P90702) 60S ribosomal protein L44| Length = 104 Score = 29.6 bits (65), Expect = 2.4 Identities = 11/12 (91%), Positives = 12/12 (100%) Frame = +2 Query: 107 HTLHKVTQYKKG 142 HT+HKVTQYKKG Sbjct: 18 HTMHKVTQYKKG 29
>RL44_CANTR (P27075) 60S ribosomal protein L44 (60S ribosomal protein L41)| Length = 105 Score = 29.6 bits (65), Expect = 2.4 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +2 Query: 53 VNVPXXXXXXXXXXXXXXHTLHKVTQYKKG 142 VN+P HT+HKVTQYK G Sbjct: 1 VNIPKTRNTYCKGKGCRKHTIHKVTQYKAG 30
>HELS_PYRAB (Q9V0A9) Putative ski2-type helicase (EC 3.6.1.-)| Length = 715 Score = 29.3 bits (64), Expect = 3.1 Identities = 10/24 (41%), Positives = 19/24 (79%) Frame = +1 Query: 61 SENQEDLLQEQGVQEAHPPQGHAI 132 SE +++L+E+G++E +PPQ A+ Sbjct: 9 SEKIKEILRERGIEELYPPQAEAL 32
>INVO_AOTTR (P24708) Involucrin| Length = 544 Score = 28.9 bits (63), Expect = 4.1 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%) Frame = +1 Query: 1 PQEKQQTRGGELPGGDXGERSENQEDLL----QEQGVQEAHPPQGHAI 132 PQE+Q+ G+L G + ER Q Q QG+Q+A PP+G + Sbjct: 483 PQEQQE---GQLKGLEQQERQLEQPVFAPAPGQVQGIQQALPPKGEVL 527
>RL44_YEAST (P02405) 60S ribosomal protein L42 (L44) (YL27) (YP44) (L41)| (Maintenance of killer protein 18) Length = 105 Score = 28.9 bits (63), Expect = 4.1 Identities = 14/30 (46%), Positives = 14/30 (46%) Frame = +2 Query: 53 VNVPXXXXXXXXXXXXXXHTLHKVTQYKKG 142 VNVP HT HKVTQYK G Sbjct: 1 VNVPKTRKTYCKGKTCRKHTQHKVTQYKAG 30
>RL44_PICGU (P31866) 60S ribosomal protein L44 (60S ribosomal protein L41)| Length = 102 Score = 28.5 bits (62), Expect = 5.4 Identities = 14/30 (46%), Positives = 14/30 (46%) Frame = +2 Query: 53 VNVPXXXXXXXXXXXXXXHTLHKVTQYKKG 142 VNVP HT HKVTQYK G Sbjct: 1 VNVPKTRRTYCKGKDCRKHTQHKVTQYKAG 30
>RL44_PICJA (P52809) 60S ribosomal protein L44 (60S ribosomal protein L41)| Length = 105 Score = 28.5 bits (62), Expect = 5.4 Identities = 14/30 (46%), Positives = 14/30 (46%) Frame = +2 Query: 53 VNVPXXXXXXXXXXXXXXHTLHKVTQYKKG 142 VNVP HT HKVTQYK G Sbjct: 1 VNVPKTRRTYCKGKECRKHTQHKVTQYKAG 30
>RL44_PICCI (Q9UVB8) 60S ribosomal protein L44 (60S ribosomal protein L41)| Length = 105 Score = 28.5 bits (62), Expect = 5.4 Identities = 14/30 (46%), Positives = 14/30 (46%) Frame = +2 Query: 53 VNVPXXXXXXXXXXXXXXHTLHKVTQYKKG 142 VNVP HT HKVTQYK G Sbjct: 1 VNVPKTRKTYCKGKECRKHTQHKVTQYKAG 30
>RL44_DEBOC (P31028) 60S ribosomal protein L44 (L41)| Length = 105 Score = 28.5 bits (62), Expect = 5.4 Identities = 14/30 (46%), Positives = 14/30 (46%) Frame = +2 Query: 53 VNVPXXXXXXXXXXXXXXHTLHKVTQYKKG 142 VNVP HT HKVTQYK G Sbjct: 1 VNVPKTRKTYCKGKECRKHTQHKVTQYKAG 30
>SURF2_MOUSE (P09926) Surfeit locus protein 2 (Surf-2)| Length = 257 Score = 28.1 bits (61), Expect = 7.0 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +1 Query: 4 QEKQQTRGGELPGGDXG---ERSENQEDLLQEQGVQEAHPPQ 120 + + QT ELPG G S ++ED L + + + +PP+ Sbjct: 134 KREDQTNSDELPGQRTGFWEPASSDEEDALSDDSMTDLYPPE 175
>RL44_PLAF7 (O97231) 60S ribosomal protein L44| Length = 103 Score = 28.1 bits (61), Expect = 7.0 Identities = 10/12 (83%), Positives = 12/12 (100%) Frame = +2 Query: 107 HTLHKVTQYKKG 142 HT+HKV+QYKKG Sbjct: 18 HTMHKVSQYKKG 29
>RL44_CAEEL (P48166) 60S ribosomal protein L44 (L41)| Length = 104 Score = 27.7 bits (60), Expect = 9.1 Identities = 11/12 (91%), Positives = 11/12 (91%) Frame = +2 Query: 107 HTLHKVTQYKKG 142 HT HKVTQYKKG Sbjct: 18 HTNHKVTQYKKG 29 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,583,001 Number of Sequences: 219361 Number of extensions: 102252 Number of successful extensions: 379 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 371 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 378 length of database: 80,573,946 effective HSP length: 22 effective length of database: 75,748,004 effective search space used: 1817952096 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
