ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal38b24 |
|---|---|
| Clone Library Name | barley_pub |
>NUOM_BUCAI (P57263) NADH-quinone oxidoreductase chain M (EC 1.6.99.5) (NADH| dehydrogenase I, chain M) (NDH-1, chain M) Length = 505 Score = 38.1 bits (87), Expect = 0.023 Identities = 27/97 (27%), Positives = 49/97 (50%) Frame = +3 Query: 42 TVIALHIFASPMYEYLDTRFGSKVGGPFAMHNVIFRVGVRGGYLAVNTLMAAMLPFLGDF 221 TV AL I + +Y+ T+ SK+GG ++ + + G + N + F+G+F Sbjct: 350 TVAALCILSGQIYKRFKTQDMSKMGGLWSC--IYWIPGFSLFFSLANLGVPGTGNFIGEF 407 Query: 222 MSLTGALSTFPLTFVLANHMYLVSNRQRLSSLQKSWH 332 + L+G FPL +LA + S+ L+ +QK ++ Sbjct: 408 LILSGVFEVFPLVSILATIGIVFSSIYSLNVIQKIFY 444
>NUOM_BUCAP (Q8K9X6) NADH-quinone oxidoreductase chain M (EC 1.6.99.5) (NADH| dehydrogenase I, chain M) (NDH-1, chain M) Length = 501 Score = 36.6 bits (83), Expect = 0.067 Identities = 25/97 (25%), Positives = 49/97 (50%) Frame = +3 Query: 51 ALHIFASPMYEYLDTRFGSKVGGPFAMHNVIFRVGVRGGYLAVNTLMAAMLPFLGDFMSL 230 AL I + +Y+YL T+ S++GG + N+ + G + N + F+G+F+ L Sbjct: 354 ALFILSGQIYKYLKTQDISEMGGLWT--NIYWIPGFSLFFALSNLGIPGTGNFIGEFLIL 411 Query: 231 TGALSTFPLTFVLANHMYLVSNRQRLSSLQKSWHWLN 341 G PL +++ + S+ L+ +QK ++ L+ Sbjct: 412 FGIFKEHPLVSIISTIGIIFSSIYSLNMIQKIYYGLS 448
>FOXJ3_HUMAN (Q9UPW0) Forkhead box protein J3| Length = 622 Score = 35.4 bits (80), Expect = 0.15 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = -1 Query: 224 HEVPQEGQHRGHERVDGQVPSPHAHPEYHVVHRERA-SHLAPEPGVQV 84 H P QH + Q PSPH H ++H H+ + +H AP P QV Sbjct: 399 HPAPHPQQHSQLQSPHPQHPSPHQHIQHHPNHQHQTLTHQAPPPPQQV 446
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 32.7 bits (73), Expect = 0.97 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Frame = -1 Query: 269 EHEGERECAERPSEAH----EVPQEGQHRGHERVDGQVPSPHAHPEYHVVHRERASHLAP 102 E E E+ AER SEA +VP+ Q RG R + + S + +AS+L P Sbjct: 906 EREAEKPVAERESEAGGPEVKVPEAVQDRGPLRAEAEGTSQD--------QKGQASNLTP 957 Query: 101 EPGVQV 84 EPG V Sbjct: 958 EPGAGV 963
>ZN500_HUMAN (O60304) Zinc finger protein 500| Length = 480 Score = 32.3 bits (72), Expect = 1.3 Identities = 19/43 (44%), Positives = 23/43 (53%) Frame = +2 Query: 71 AHVRVPGHPVREQGGRPVRDAQRDIQGGREGRVPGRQHAHGRD 199 A + PGHP+ Q PVR R Q R G PGR+ +HG D Sbjct: 281 ARCQGPGHPLPGQRPAPVRGLVRPDQ-PRGGPPPGRRASHGAD 322
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 32.3 bits (72), Expect = 1.3 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = -1 Query: 242 ERPSEAHEVPQEGQHRGHERVDGQVPSPHAHPEYHVVHRERA-SHLAPEPGVQV 84 +RP H P QH + Q P PH H ++H H+ + +H P P QV Sbjct: 396 QRPQ--HPAPHPQQHSQLQPPHSQHPPPHQHIQHHPNHQHQTLAHQPPPPPQQV 447
>PRM2_MACNE (P35298) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 103 Score = 31.6 bits (70), Expect = 2.2 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -1 Query: 254 RECAERPSEAHEVPQEGQHRGHERVDGQVPSPHAHPEYHVVHRERASH 111 R +ERP E H GQ +GH + Q +P Y HR + H Sbjct: 7 RSLSERPHEVHGQQVHGQDQGHNGQEEQGLNPEHVEVYERTHRGHSHH 54
>PRM2_MACFU (P61253) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 103 Score = 31.6 bits (70), Expect = 2.2 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -1 Query: 254 RECAERPSEAHEVPQEGQHRGHERVDGQVPSPHAHPEYHVVHRERASH 111 R +ERP E H GQ +GH + Q +P Y HR + H Sbjct: 7 RSLSERPHEVHGQQVHGQDQGHNGQEEQGLNPEHVEVYERTHRGHSHH 54
>PRM2_ERYPA (Q9GKM0) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 103 Score = 31.2 bits (69), Expect = 2.8 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -1 Query: 254 RECAERPSEAHEVPQEGQHRGHERVDGQVPSPHAHPEYHVVHRERASH 111 R +ERP E H GQ +GH + Q SP Y H+ + H Sbjct: 7 RSLSERPHEVHGQQVHGQDQGHNGQEEQGLSPEHVEVYERTHQGHSHH 54
>ZYX_MOUSE (Q62523) Zyxin| Length = 564 Score = 30.8 bits (68), Expect = 3.7 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 8/60 (13%) Frame = -1 Query: 173 QVPSPHAHPEYHVVHRERAS----HLAPEPG----VQVLVHGRREDV*CYDCLEEGREVA 18 Q PH+ P+YH + R S + PEPG V+V+ + + CY C + G+ ++ Sbjct: 478 QANQPHSVPDYHKQYAPRCSVCSEPIMPEPGRDETVRVVALDKNFHMKCYKCEDCGKPLS 537
>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 852 Score = 30.8 bits (68), Expect = 3.7 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = -1 Query: 272 GEHEGERECAERPSEAHEVPQEGQHRGHERVDGQ-VPSPHAHPEYHVVHRER 120 GE EGE E E EV E +HRGH + D + + H HR R Sbjct: 182 GEEEGEEE-----EEEEEVSPEHRHRGHGKEDEEDEDDDSTESDRHQAHRHR 228 Score = 30.0 bits (66), Expect = 6.3 Identities = 16/33 (48%), Positives = 17/33 (51%) Frame = -1 Query: 272 GEHEGERECAERPSEAHEVPQEGQHRGHERVDG 174 G E E E + E H VP G HRGHE DG Sbjct: 456 GHGEEEDEDDDDEGEHHHVPHRG-HRGHEEDDG 487
>LEGB_PEA (P14594) Legumin B [Contains: Legumin B alpha chain (Legumin B| acidic chain); Legumin B beta chain (Legumin B basic chain)] (Fragment) Length = 338 Score = 30.8 bits (68), Expect = 3.7 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Frame = -1 Query: 317 QRGEALPVGDEVHMVGEH--EGERECAERPSEAHEVPQEGQHRGHERVDGQVPSPHAHPE 144 +RG+ + V D +H++ E E + + E E QE +HR H + + + E Sbjct: 33 ERGQIVKVEDGLHIISPELQEEEEQSHSQRKEEEEEEQEQRHRKHSKKEDEDEDEEEEEE 92 Query: 143 YHVVHRERA 117 HR+ + Sbjct: 93 REQRHRKHS 101
>YRAO_BACSU (O05407) Hypothetical protein yraO| Length = 438 Score = 30.4 bits (67), Expect = 4.8 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Frame = +3 Query: 96 RFGSKVGGPFAMHNVIFRVGVRGGYLA--------VNTLMAAMLPFLGDFMSLTGALSTF 251 R G + ++F GV G L+ +L++ + +G F + AL++ Sbjct: 284 RIAEHSGNAITVVLLVFSAGVFAGILSGTKMVDAIAGSLISIIPSSMGGFFPVIVALTSI 343 Query: 252 PLTFVLANHMY 284 P TFVL+N Y Sbjct: 344 PFTFVLSNDAY 354
>RPA1_MOUSE (O35134) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)| (RNA polymerase I 194 kDa subunit) (RPA194) Length = 1717 Score = 30.4 bits (67), Expect = 4.8 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -1 Query: 290 DEVHMVGEHEGERECAERPSEAHEVPQEGQHRGHE 186 +EV E EGE E E E + +G H+GHE Sbjct: 1430 EEVDYESEEEGEEEEEEEVQEEGNIKGDGVHQGHE 1464
>PRM2_SEMEN (Q9GKM1) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 103 Score = 30.0 bits (66), Expect = 6.3 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -1 Query: 254 RECAERPSEAHEVPQEGQHRGHERVDGQVPSPHAHPEYHVVHRERASH 111 R +ERP E H GQ +GH + Q SP Y H+ + H Sbjct: 7 RSLSERPHEVHGQQVYGQEQGHNGQEEQGLSPEHVEVYERTHQGYSHH 54
>AEXT_AERSA (Q93Q17) ADP-ribosyltransferase toxin aexT (EC 2.4.2.-) (Exoenzyme| T) Length = 475 Score = 30.0 bits (66), Expect = 6.3 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Frame = +2 Query: 152 GREGRVPGRQHAHGRDAALPGGLHEPHWGAQHIPSHLRAR--QPYVPRLQQATPLLAAEV 325 GR G++ RQ A G+DA L G EP G Q + S L A+ +P+V + + LL + Sbjct: 24 GRMGQMEARQVATGQDAILLGSRSEPQKG-QGLLSRLGAQLARPFVAIKEWISNLLGTDK 82 Query: 326 MA 331 A Sbjct: 83 RA 84
>CEP68_HUMAN (Q76N32) Centrosomal protein of 68 kDa (Cep68 protein)| Length = 757 Score = 30.0 bits (66), Expect = 6.3 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = +2 Query: 125 RDAQRDIQGGREGRVPGRQHAHGRDAALPGGLHEPHWGAQHIPS 256 R+ + DI G G P R A G GL P WGA+ IP+ Sbjct: 27 RERELDIPGPMSGEQPPRLEAEG-------GLISPVWGAEGIPA 63
>ODO1_STAS1 (Q49XM5) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 933 Score = 30.0 bits (66), Expect = 6.3 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +2 Query: 146 QGGREGRVPGRQHAHGRDAALPGGLHEPHWGAQHIPSH 259 Q GR R+ G+ G + LH+P GAQ++P H Sbjct: 605 QNGRPIRLTGQDSERGTFSHRHAVLHDPDTGAQYVPLH 642
>PSAA_SPIOL (P06511) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 750 Score = 30.0 bits (66), Expect = 6.3 Identities = 20/62 (32%), Positives = 31/62 (50%) Frame = +3 Query: 36 LQTVIALHIFASPMYEYLDTRFGSKVGGPFAMHNVIFRVGVRGGYLAVNTLMAAMLPFLG 215 L V+A H++A P Y YL T +G+++ F H I GG+L V A + + Sbjct: 360 LTIVVAHHMYAMPPYPYLATDYGTQL-SLFTHHMWI------GGFLIVGAAAHAAIFMVR 412 Query: 216 DF 221 D+ Sbjct: 413 DY 414
>PSAA_EQUPA (Q9MUJ6) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) (Fragment) Length = 719 Score = 30.0 bits (66), Expect = 6.3 Identities = 19/62 (30%), Positives = 31/62 (50%) Frame = +3 Query: 36 LQTVIALHIFASPMYEYLDTRFGSKVGGPFAMHNVIFRVGVRGGYLAVNTLMAAMLPFLG 215 L ++A H++A P Y YL T +G+++ F H I GG+L V A + + Sbjct: 350 LTIIVAHHMYAMPPYPYLATDYGTQL-SLFTHHMWI------GGFLVVGAAAHAAIFMVR 402 Query: 216 DF 221 D+ Sbjct: 403 DY 404
>ARAB_BACSK (Q5WL06) Ribulokinase (EC 2.7.1.16)| Length = 561 Score = 30.0 bits (66), Expect = 6.3 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = +2 Query: 140 DIQGGREGRVPGRQHAHGR-DAALP--GGLHEPHWGAQHIPSHLRARQPYVPRLQQATPL 310 D++ G E +AHG D LP G EP W QH +L + VP++ + + Sbjct: 21 DLENGAEVAEHVTPYAHGVIDQCLPDSGRSLEPEWALQHPGDYLDVLRLSVPKVVEIADI 80 Query: 311 LAAEVM 328 A++V+ Sbjct: 81 SASQVI 86
>TAO1A_XENLA (Q6NU21) Serine/threonine-protein kinase TAO1-A (EC 2.7.11.1)| (Thousand and one amino acid protein 1-A) Length = 1001 Score = 30.0 bits (66), Expect = 6.3 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%) Frame = -1 Query: 284 VHMVGEHEG---ERECAERPSEAHEVPQEGQHRGHER 183 +H+ E E E E RPSE H PQ +H+ H R Sbjct: 397 IHLKPEEENYPEEPEPRTRPSEPHSPPQVSRHKSHYR 433
>ZYX_HUMAN (Q15942) Zyxin (Zyxin-2)| Length = 572 Score = 30.0 bits (66), Expect = 6.3 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 8/60 (13%) Frame = -1 Query: 173 QVPSPHAHPEYHVVHRERAS----HLAPEPG----VQVLVHGRREDV*CYDCLEEGREVA 18 Q PH P+YH + R S + PEPG V+V+ + + CY C + G+ ++ Sbjct: 486 QANRPHCVPDYHKQYAPRCSVCSEPIMPEPGRDETVRVVALDKNFHMKCYKCEDCGKPLS 545
>GLCAP_SOYBN (P11827) Beta-conglycinin, alpha' chain precursor| Length = 639 Score = 29.6 bits (65), Expect = 8.2 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 4/51 (7%) Frame = -1 Query: 263 EGERECAE----RPSEAHEVPQEGQHRGHERVDGQVPSPHAHPEYHVVHRE 123 E E EC E RP H + QH E +G+ P P P H+E Sbjct: 64 EEEEECEEGQIPRPRPQHPERERQQHGEKEEDEGEQPRPFPFPRPRQPHQE 114
>PSAA_MARPO (P06406) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 750 Score = 29.6 bits (65), Expect = 8.2 Identities = 19/62 (30%), Positives = 31/62 (50%) Frame = +3 Query: 36 LQTVIALHIFASPMYEYLDTRFGSKVGGPFAMHNVIFRVGVRGGYLAVNTLMAAMLPFLG 215 L ++A H++A P Y YL T +G+++ F H I GG+L V A + + Sbjct: 360 LTIIVAHHMYAMPPYPYLATDYGTQL-SLFTHHMWI------GGFLIVGAAAHAAIFMVR 412 Query: 216 DF 221 D+ Sbjct: 413 DY 414
>DCDA_BUCBP (Q89AC6) Diaminopimelate decarboxylase (EC 4.1.1.20) (DAP| decarboxylase) Length = 418 Score = 29.6 bits (65), Expect = 8.2 Identities = 15/66 (22%), Positives = 31/66 (46%) Frame = -2 Query: 319 CSEERRCLLETRYIWLASTKVRGNVLSAPVRLMKSPRKGSIAAMSVLTARYPPLTPTLNI 140 C++E + ++W + K+ N L+ P+RL P + +A +L + + T N Sbjct: 230 CNDEPVNVKNYFFLWNKARKIISNYLNRPIRLEIEPGRFLVAESGILVSEIRVIKKTNNR 289 Query: 139 TLCIAN 122 T + + Sbjct: 290 TFILVD 295
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 29.6 bits (65), Expect = 8.2 Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 1/68 (1%) Frame = -1 Query: 296 VGDEVHMVGEHEGERECAERPSEAHEVPQEGQHRGHERVDGQVPSPHAHPE-YHVVHRER 120 V D VH EH E P E HE E H H HPE +H H E Sbjct: 48 VEDTVHP--EHLHEEHHHHHPEEHHEPHHEEHH-------------HHHPEEHHEPHHEE 92 Query: 119 ASHLAPEP 96 H P P Sbjct: 93 HHHHHPHP 100 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,681,120 Number of Sequences: 219361 Number of extensions: 1687878 Number of successful extensions: 6046 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 5704 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6021 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
