ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal37l19 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | NCAP_IAZW2 (P26083) Nucleoprotein | 29 | 3.3 | 2 | NCAP_IAZW1 (P26082) Nucleoprotein | 29 | 3.3 | 3 | NCAP_IAZTE (P15679) Nucleoprotein | 29 | 3.3 | 4 | NCAP_IAZON (P26087) Nucleoprotein | 29 | 3.3 | 5 | NCAP_IAZJ1 (P26084) Nucleoprotein | 29 | 3.3 | 6 | NCAP_IAZH4 (P16987) Nucleoprotein | 29 | 3.3 | 7 | NCAP_IANEJ (P26074) Nucleoprotein | 29 | 3.3 | 8 | NCAP_IAFPR (P12604) Nucleoprotein | 28 | 4.3 | 9 | NCAP_IAUSS (P18073) Nucleoprotein | 28 | 5.6 | 10 | NCAP_IAFOW (P18071) Nucleoprotein | 28 | 5.6 | 11 | NCAP_IABRA (P18069) Nucleoprotein | 28 | 5.6 | 12 | NCAP_IAANN (P21433) Nucleoprotein | 28 | 5.6 | 13 | GAG_HV1RH (P05890) Gag polyprotein (Pr55Gag) [Contains: Matrix p... | 28 | 7.3 | 14 | NCAP_IAZMA (P26081) Nucleoprotein | 28 | 7.3 | 15 | NCAP_IAZJ3 (P26086) Nucleoprotein | 28 | 7.3 | 16 | STE12_EMENI (O74252) Transcription factor steA | 27 | 9.6 |
|---|
>NCAP_IAZW2 (P26083) Nucleoprotein| Length = 498 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = -2 Query: 336 CVXVPVEPLXARGFIRCHQLIPRSLIPTKNLTDSSGELTAATMGS---VRNRWHRRRNCS 166 C E L GFIR +++PR + T+ + +S E A S +R+R+ R S Sbjct: 333 CHSAAFEDLRVSGFIRGKRVVPRGKLSTRGVQIASNENVEAMDSSTLELRSRYWAIRTRS 392 Query: 165 G 163 G Sbjct: 393 G 393
>NCAP_IAZW1 (P26082) Nucleoprotein| Length = 498 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = -2 Query: 336 CVXVPVEPLXARGFIRCHQLIPRSLIPTKNLTDSSGELTAATMGS---VRNRWHRRRNCS 166 C E L GFIR +++PR + T+ + +S E A S +R+R+ R S Sbjct: 333 CHSAAFEDLRVSGFIRGKRVVPRGKLSTRGVQIASNENVEAMDSSTLELRSRYWAIRTRS 392 Query: 165 G 163 G Sbjct: 393 G 393
>NCAP_IAZTE (P15679) Nucleoprotein| Length = 498 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = -2 Query: 336 CVXVPVEPLXARGFIRCHQLIPRSLIPTKNLTDSSGELTAATMGS---VRNRWHRRRNCS 166 C E L GFIR +++PR + T+ + +S E A S +R+R+ R S Sbjct: 333 CHSAAFEDLRVSGFIRGKKVVPRGKLSTRGVQIASNENVEAMDSSTLELRSRYWAIRTRS 392 Query: 165 G 163 G Sbjct: 393 G 393
>NCAP_IAZON (P26087) Nucleoprotein| Length = 498 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = -2 Query: 336 CVXVPVEPLXARGFIRCHQLIPRSLIPTKNLTDSSGELTAATMGS---VRNRWHRRRNCS 166 C E L GFIR +++PR + T+ + +S E A S +R+R+ R S Sbjct: 333 CHSAAFEDLRVSGFIRGKKVVPRGKLSTRGVQIASNENVEAMDSSTLELRSRYWAIRTRS 392 Query: 165 G 163 G Sbjct: 393 G 393
>NCAP_IAZJ1 (P26084) Nucleoprotein| Length = 498 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = -2 Query: 336 CVXVPVEPLXARGFIRCHQLIPRSLIPTKNLTDSSGELTAATMGS---VRNRWHRRRNCS 166 C E L GFIR +++PR + T+ + +S E A S +R+R+ R S Sbjct: 333 CHSAAFEDLRVSGFIRGKKVVPRGKLSTRGVQIASNENVEAMDSSTLELRSRYWAIRTRS 392 Query: 165 G 163 G Sbjct: 393 G 393
>NCAP_IAZH4 (P16987) Nucleoprotein| Length = 498 Score = 28.9 bits (63), Expect = 3.3 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -2 Query: 336 CVXVPVEPLXARGFIRCHQLIPRSLIPTKNLTDSSGELTAATMGS----VRNRWHRRRNC 169 C E L GFIR ++IPR + T+ + +S E TM S +R+R+ R Sbjct: 333 CHSAAFEDLRVSGFIRGKKVIPRGKLSTRGVQIASNE-NVETMDSSTLELRSRYWAIRTR 391 Query: 168 SG 163 SG Sbjct: 392 SG 393
>NCAP_IANEJ (P26074) Nucleoprotein| Length = 498 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = -2 Query: 336 CVXVPVEPLXARGFIRCHQLIPRSLIPTKNLTDSSGELTAATMGS---VRNRWHRRRNCS 166 C E L GFIR +++PR + T+ + +S E A S +R+R+ R S Sbjct: 333 CHSAAFEDLRVSGFIRGKKVVPRGRLSTRGVQIASNENVEAMDSSTLELRSRYWAIRTRS 392 Query: 165 G 163 G Sbjct: 393 G 393
>NCAP_IAFPR (P12604) Nucleoprotein| Length = 498 Score = 28.5 bits (62), Expect = 4.3 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -2 Query: 336 CVXVPVEPLXARGFIRCHQLIPRSLIPTKNLTDSSGELTAATMGS----VRNRWHRRRNC 169 C E L FIR +++PR +PT+ + +S E TM S +R+R+ R Sbjct: 333 CHSAAFEDLRVSSFIRGTRVVPRGQLPTRGVQIASNE-NMETMDSSTLELRSRYWAIRTR 391 Query: 168 SG 163 SG Sbjct: 392 SG 393
>NCAP_IAUSS (P18073) Nucleoprotein| Length = 498 Score = 28.1 bits (61), Expect = 5.6 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -2 Query: 336 CVXVPVEPLXARGFIRCHQLIPRSLIPTKNLTDSSGELTAATMGS----VRNRWHRRRNC 169 C E L FIR ++IPR + T+ + +S E TMGS +R+R+ R Sbjct: 333 CNSAAFEDLRVSSFIRGTKVIPRGKLSTRGVQIASNE-NMDTMGSSTLELRSRYWAIRTR 391 Query: 168 SG 163 SG Sbjct: 392 SG 393
>NCAP_IAFOW (P18071) Nucleoprotein| Length = 498 Score = 28.1 bits (61), Expect = 5.6 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -2 Query: 336 CVXVPVEPLXARGFIRCHQLIPRSLIPTKNLTDSSGELTAATMGS----VRNRWHRRRNC 169 C E L FIR ++IPR + T+ + +S E TMGS +R+R+ R Sbjct: 333 CNSAAFEDLRVSSFIRGTKVIPRGKLSTRGVQIASNE-NMDTMGSSTLELRSRYWAIRTR 391 Query: 168 SG 163 SG Sbjct: 392 SG 393
>NCAP_IABRA (P18069) Nucleoprotein| Length = 498 Score = 28.1 bits (61), Expect = 5.6 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -2 Query: 336 CVXVPVEPLXARGFIRCHQLIPRSLIPTKNLTDSSGELTAATMGS----VRNRWHRRRNC 169 C E L FIR ++IPR + T+ + +S E TMGS +R+R+ R Sbjct: 333 CNSAAFEDLRVSSFIRGTKVIPRGKLSTRGVQIASNE-NMDTMGSSTLELRSRYWAIRTR 391 Query: 168 SG 163 SG Sbjct: 392 SG 393
>NCAP_IAANN (P21433) Nucleoprotein| Length = 498 Score = 28.1 bits (61), Expect = 5.6 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -2 Query: 336 CVXVPVEPLXARGFIRCHQLIPRSLIPTKNLTDSSGELTAATMGS----VRNRWHRRRNC 169 C E L FIR ++IPR + T+ + +S E TMGS +R+R+ R Sbjct: 333 CNSAAFEDLRVSSFIRGTKVIPRGKLSTRGVQIASNE-NMDTMGSSTLELRSRYWAIRTR 391 Query: 168 SG 163 SG Sbjct: 392 SG 393
>GAG_HV1RH (P05890) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 500 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 4/32 (12%) Frame = -1 Query: 226 AHRGHDG----ISKEPVAPPQELLRFAVKVTP 143 +H+G G EP APP+E RF + TP Sbjct: 441 SHKGRPGNFLQSRPEPTAPPEESFRFGEETTP 472
>NCAP_IAZMA (P26081) Nucleoprotein| Length = 498 Score = 27.7 bits (60), Expect = 7.3 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -2 Query: 336 CVXVPVEPLXARGFIRCHQLIPRSLIPTKNLTDSSGELTAATMGS----VRNRWHRRRNC 169 C E L GFIR +++PR + T+ + +S E TM S +R+R+ R Sbjct: 333 CHSAAFEDLRISGFIRGKRVVPRGQLSTRGVQIASNE-NMETMDSSTLELRSRYWAIRTR 391 Query: 168 SG 163 SG Sbjct: 392 SG 393
>NCAP_IAZJ3 (P26086) Nucleoprotein| Length = 498 Score = 27.7 bits (60), Expect = 7.3 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = -2 Query: 336 CVXVPVEPLXARGFIRCHQLIPRSLIPTKNLTDSSGELTAATMGS---VRNRWHRRRNCS 166 C E L GFIR +++PR + T+ + +S E A + +R+R+ R S Sbjct: 333 CHSAAFEDLRVSGFIRGKKVVPRGKLSTRGVQIASNENVEAMDSNTLELRSRYWAIRTRS 392 Query: 165 G 163 G Sbjct: 393 G 393
>STE12_EMENI (O74252) Transcription factor steA| Length = 692 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = -1 Query: 301 RIHSMSSAHPTFTDPYEEPDRQLRGAHRGHD--GISKEPVAPPQ 176 RIH S+ PTF + Y + + + G+S EPV PPQ Sbjct: 298 RIHQRHSSMPTFVE-YSPAPSFVSSQYEDYSNRGLSFEPVTPPQ 340 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,027,795 Number of Sequences: 219361 Number of extensions: 742892 Number of successful extensions: 1989 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1952 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1988 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
