ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal37l13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_652749.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0237.2), mRNA Length = 3381 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 169 tcaacattcaacttgtctgcagcttg 194 |||||| ||||||||||||||||||| Sbjct: 1631 tcaacagtcaacttgtctgcagcttg 1606
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 279 gacaagcgcctgggcgagctgc 300 |||||||||||||||||||||| Sbjct: 343414 gacaagcgcctgggcgagctgc 343435
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 279 gacaagcgcctgggcgagctgc 300 |||||||||||||||||||||| Sbjct: 240574 gacaagcgcctgggcgagctgc 240595
>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12 Length = 349726 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 279 gacaagcgcctgggcgagctgc 300 |||||||||||||||||||||| Sbjct: 226444 gacaagcgcctgggcgagctgc 226465
>gb|U12276.1|BPU12276 Bordetella pertussis BrkA (brkA) gene and BrkB (brkB) genes, complete cds Length = 4300 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 279 gacaagcgcctgggcgagctgc 300 |||||||||||||||||||||| Sbjct: 3409 gacaagcgcctgggcgagctgc 3430
>ref|XM_958777.1| Neurospora crassa OR74A hypothetical protein (NCU03062.1) partial mRNA Length = 2706 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 gcgtccgacgaggctcgccgc 417 ||||||||||||||||||||| Sbjct: 1765 gcgtccgacgaggctcgccgc 1785
>ref|XM_330497.1| Neurospora crassa OR74A hypothetical protein (NCU03062.1) partial mRNA Length = 2706 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 gcgtccgacgaggctcgccgc 417 ||||||||||||||||||||| Sbjct: 1765 gcgtccgacgaggctcgccgc 1785
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 277 tcgacaagcgcctgggcgagc 297 ||||||||||||||||||||| Sbjct: 309370 tcgacaagcgcctgggcgagc 309350
>gb|AC169036.3| Mus musculus BAC clone RP23-382O15 from chromosome 5, complete sequence Length = 215306 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 cagatggccttggccttgtc 278 |||||||||||||||||||| Sbjct: 27658 cagatggccttggccttgtc 27639
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 ctcgccgccgacgaagcgcc 429 |||||||||||||||||||| Sbjct: 2129824 ctcgccgccgacgaagcgcc 2129843
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.5 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 409 gctcgccgccgacgaagc-gcccgccgc 435 |||||||||||||||||| ||||||||| Sbjct: 3570774 gctcgccgccgacgaagcggcccgccgc 3570801
>ref|NM_001031299.1| Gallus gallus transmembrane protein 22 (TMEM22), mRNA Length = 1950 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 agtaacacatgtccagaact 83 |||||||||||||||||||| Sbjct: 1486 agtaacacatgtccagaact 1467
>gb|BC079427.1| Rattus norvegicus RD RNA-binding protein, mRNA (cDNA clone MGC:94972 IMAGE:7114415), complete cds Length = 1344 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 aaccaggggccgcgcgggga 373 |||||||||||||||||||| Sbjct: 26 aaccaggggccgcgcgggga 7
>gb|AF049850.1|MMHC438N12 Mus musculus major histocompatibility locus class III region: complement C4 (C4) and cytochrome P450 hydroxylase A (CYP21OH-A) genes, complete cds; slp pseudogene, complete sequence; NG6, SKI, and complement factor B (Bf) genes, complete cds; and complement factor C2 (C2) gene, partial cds Length = 149886 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 aaccaggggccgcgcgggga 373 |||||||||||||||||||| Sbjct: 125013 aaccaggggccgcgcgggga 124994
>gb|U03956.1|ZMU03956 Zea mays mays clone mays61 retrotransposon, partial LTR sequence Length = 482 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| || ||||||||||||||||| Sbjct: 296 cgtccgatgacgctcgccgccgacgaag 269
>gb|U03955.1|ZMU03955 Zea mays mays clone mays59 retrotransposon, partial LTR sequence Length = 482 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| || ||||||||||||||||| Sbjct: 296 cgtccgatgacgctcgccgccgacgaag 269
>gb|U03954.1|ZMU03954 Zea mays mays clone mays55 retrotransposon, partial LTR sequence Length = 482 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| ||| |||||||||||||||| Sbjct: 296 cgtccgatgagcctcgccgccgacgaag 269
>gb|U03953.1|ZMU03953 Zea mays mays clone mays53 retrotransposon, partial LTR sequence Length = 482 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| || ||||||||||||||||| Sbjct: 296 cgtccgatgacgctcgccgccgacgaag 269
>gb|U03952.1|ZMU03952 Zea mays mays clone mays50 retrotransposon, partial LTR sequence Length = 482 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| || ||||||||||||||||| Sbjct: 296 cgtccgatgacgctcgccgccgacgaag 269
>gb|U03949.1|ZMU03949 Zea mays mays clone mays10 retrotransposon, partial LTR sequence Length = 482 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| || ||||||||||||||||| Sbjct: 296 cgtccgatgacgctcgccgccgacgaag 269
>gb|AC122245.5| Mus musculus BAC clone RP23-151P21 from 18, complete sequence Length = 191988 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tttccttgggatcacccacc 222 |||||||||||||||||||| Sbjct: 82726 tttccttgggatcacccacc 82707
>gb|AY349470.1| Branchiostoma floridae hairy D protein mRNA, complete cds Length = 1196 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 408 ggctcgccgccgacgaagcgcccg 431 |||||||||||||||||| ||||| Sbjct: 693 ggctcgccgccgacgaagtgcccg 670
>gb|AC108774.10| Mus musculus chromosome 1, clone RP23-249J23, complete sequence Length = 236406 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gaacaacattgcaattagca 21 |||||||||||||||||||| Sbjct: 175576 gaacaacattgcaattagca 175557
>emb|X60691.1|LAASNASE L.angustifolius gene for developing seed L-asparaginase Length = 3113 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 gtaattgatttagaacagag 55 |||||||||||||||||||| Sbjct: 2113 gtaattgatttagaacagag 2132
>emb|AL031781.1|HS51J12 Human DNA sequence from clone RP1-51J12 on chromosome 6q26-27 Contains the 3' part of the alternatively spliced gene for the human orthologs of mouse QKI-7 and QKI-7B (KH Domain RNA Binding proteins) and zebrafish ZKQ-1 (Quaking protein homolog), complete sequence Length = 117813 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 taattgatttagaacagagc 56 |||||||||||||||||||| Sbjct: 34437 taattgatttagaacagagc 34456
>emb|BX883045.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 4/11 Length = 346406 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 aaccaggggccgcgcgggga 373 |||||||||||||||||||| Sbjct: 38429 aaccaggggccgcgcgggga 38410
>emb|AJ720290.1| Gallus gallus mRNA for hypothetical protein, clone 14e7 Length = 1950 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 agtaacacatgtccagaact 83 |||||||||||||||||||| Sbjct: 1486 agtaacacatgtccagaact 1467
>gb|DQ402483.1| Branchiostoma floridae AmphiHairyD gene, complete cds Length = 6962 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 408 ggctcgccgccgacgaagcgcccg 431 |||||||||||||||||| ||||| Sbjct: 4580 ggctcgccgccgacgaagtgcccg 4557
>dbj|AK147011.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920087G15 product:RD RNA-binding protein, full insert sequence Length = 1503 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 aaccaggggccgcgcgggga 373 |||||||||||||||||||| Sbjct: 105 aaccaggggccgcgcgggga 86
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 gacaagcgcctgggcgagct 298 |||||||||||||||||||| Sbjct: 4459106 gacaagcgcctgggcgagct 4459125
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 gcctgggcgagctgccgttggtgc 309 ||||||||||||||||| |||||| Sbjct: 3009275 gcctgggcgagctgccgctggtgc 3009252
>dbj|AK038710.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230056H17 product:unclassifiable, full insert sequence Length = 3298 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 cagatggccttggccttgtc 278 |||||||||||||||||||| Sbjct: 872 cagatggccttggccttgtc 891
>ref|NM_212548.1| Rattus norvegicus RD RNA-binding protein (Rdbp), mRNA Length = 1798 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 aaccaggggccgcgcgggga 373 |||||||||||||||||||| Sbjct: 56 aaccaggggccgcgcgggga 37
>gb|AC074289.6| Homo sapiens BAC clone RP11-207O24 from 2, complete sequence Length = 92346 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ggaatttggtaattgattta 47 |||||||||||||||||||| Sbjct: 52767 ggaatttggtaattgattta 52748
>gb|AE004914.1| Pseudomonas aeruginosa PAO1, section 475 of 529 of the complete genome Length = 11650 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 caagcgcctgggcgagctgc 300 |||||||||||||||||||| Sbjct: 4560 caagcgcctgggcgagctgc 4579
>gb|AC133941.4| Mus musculus BAC clone RP23-466I9 from chromosome 18, complete sequence Length = 185668 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tttccttgggatcacccacc 222 |||||||||||||||||||| Sbjct: 178962 tttccttgggatcacccacc 178943
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 agatggccttggccttgtcg 279 |||||||||||||||||||| Sbjct: 6488915 agatggccttggccttgtcg 6488934
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 ggatcacccacctcgatgac 230 |||||||||||||||||||| Sbjct: 4576059 ggatcacccacctcgatgac 4576078
>emb|CT025759.14| Mouse DNA sequence from clone RP24-317H19 on chromosome 17, complete sequence Length = 171682 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 aaccaggggccgcgcgggga 373 |||||||||||||||||||| Sbjct: 78541 aaccaggggccgcgcgggga 78522
>gb|U47920.1|PAU47920 Pseudomonas aeruginosa pyruvate dehydrogenase (aceA) and dihydrolipoamide acetyltransferase (aceB) genes, complete cds Length = 4901 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 caagcgcctgggcgagctgc 300 |||||||||||||||||||| Sbjct: 4575 caagcgcctgggcgagctgc 4594
>emb|AL954813.14| Mouse DNA sequence from clone RP24-541E15 on chromosome 4, complete sequence Length = 140383 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aacaacattgcaattagcat 22 |||||||||||||||||||| Sbjct: 114295 aacaacattgcaattagcat 114314
>gb|AF015269.1|AF015269 Zea mays retrotransposon Magellan, complete sequence, and PL transcription factor (Pl) gene, complete cds Length = 3218 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| || ||||||||||||||||| Sbjct: 2004 cgtccgatgacgctcgccgccgacgaag 1977 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| || ||||||||||||||||| Sbjct: 1032 cgtccgatgacgctcgccgccgacgaag 1005
>emb|AJ408381.1|RFL408381 Ramaria flavoides 18S rRNA gene, 5.8S rRNA gene, 28S rRNA gene, internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2), strain MA-Fungi 47971 Length = 635 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 agatggccttggccttgtcg 279 |||||||||||||||||||| Sbjct: 442 agatggccttggccttgtcg 461
>emb|AJ408380.1|RFL408380 Ramaria flavoides 18S rRNA gene, 5.8S rRNA gene, 28S rRNA gene, internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2), strain MA-Fungi 47972 Length = 626 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 agatggccttggccttgtcg 279 |||||||||||||||||||| Sbjct: 443 agatggccttggccttgtcg 462
>gb|U03925.1|ZDU03925 Zea diploperennis clone dip14 retrotransposon, partial LTR sequence Length = 478 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| ||| |||||||||||||||| Sbjct: 294 cgtccgatgagcctcgccgccgacgaag 267
>gb|U03917.1|TAU03917 Tripsacum andersonii clone and14 retrotransposon, partial LTR sequence Length = 478 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| || ||||||||||||||||| Sbjct: 292 cgtccgatgacgctcgccgccgacgaag 265
>gb|U03967.1|ZMU03967 Zea mays mexicana clone mex6 retrotransposon, partial LTR sequence Length = 482 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| || ||||||||||||||||| Sbjct: 296 cgtccgatgacgctcgccgccgacgaag 269
>gb|U03966.1|ZMU03966 Zea mays mexicana clone mex13 retrotransposon, partial LTR sequence Length = 482 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| || ||||||||||||||||| Sbjct: 296 cgtccgatgacgctcgccgccgacgaag 269
>gb|U03960.1|ZMU03960 Zea mays parviglumis clone par64 retrotransposon, partial LTR sequence Length = 444 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| || ||||||||||||||||| Sbjct: 257 cgtccgatgacgctcgccgccgacgaag 230
>gb|U03934.1|ZLU03934 Zea luxurians clone lux28 retrotransposon, partial LTR sequence Length = 414 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| || ||||||||||||||||| Sbjct: 227 cgtccgatgacgctcgccgccgacgaag 200
>gb|U03933.1|ZLU03933 Zea luxurians clone lux21 retrotransposon, partial LTR sequence Length = 479 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| || ||||||||||||||||| Sbjct: 293 cgtccgatgacgctcgccgccgacgaag 266
>gb|U03931.1|ZDU03931 Zea diploperennis clone dip6 retrotransposon, partial LTR sequence Length = 480 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| || ||||||||||||||||| Sbjct: 294 cgtccgatgacgctcgccgccgacgaag 267
>gb|U03930.1|ZDU03930 Zea diploperennis clone dip4 retrotransposon, partial LTR sequence Length = 480 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| || ||||||||||||||||| Sbjct: 294 cgtccgatgacgctcgccgccgacgaag 267
>gb|U03929.1|ZDU03929 Zea diploperennis clone dip2 retrotransposon, partial LTR sequence Length = 480 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| || ||||||||||||||||| Sbjct: 294 cgtccgatgacgctcgccgccgacgaag 267
>gb|U03928.1|ZDU03928 Zea diploperennis clone dip18 retrotransposon, partial LTR sequence Length = 478 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| ||| |||||||||||||||| Sbjct: 294 cgtccgatgagcctcgccgccgacgaag 267
>gb|U03926.1|ZDU03926 Zea diploperennis clone dip16 retrotransposon, partial LTR sequence Length = 478 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 cgtccgacgaggctcgccgccgacgaag 425 ||||||| ||| |||||||||||||||| Sbjct: 294 cgtccgatgagcctcgccgccgacgaag 267
>gb|M21332.1|MUSMHRDDK Mouse MHC class III RD gene (H2-d and H2-Sk haplotypes), complete cds Length = 1812 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 aaccaggggccgcgcgggga 373 |||||||||||||||||||| Sbjct: 56 aaccaggggccgcgcgggga 37 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,209,772 Number of Sequences: 3902068 Number of extensions: 3209772 Number of successful extensions: 65730 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 65165 Number of HSP's gapped (non-prelim): 566 length of query: 480 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 458 effective length of database: 17,147,199,772 effective search space: 7853417495576 effective search space used: 7853417495576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
