| Clone Name | baal37k02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468034.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1418 Score = 561 bits (283), Expect = e-157 Identities = 515/591 (87%), Gaps = 1/591 (0%) Strand = Plus / Plus Query: 15 atcggcagcttcctctccaagnaagccctacgcgccgccgtcctgggcctcgcacctcgc 74 ||||| ||||||||||||||| | ||| ||||||||||||||||||||||||||||| | Sbjct: 132 atcgggagcttcctctccaag-aggccgtacgcgccgccgtcctgggcctcgcacctgtc 190 Query: 75 cctcgcccctccccacaccttctccctcggccatttcccaaccccgattcacaagtggaa 134 || |||||| | || |||||||| |||||||||||||| || ||||| ||||||||||| Sbjct: 191 ccccgccccctcgcagaccttctcgctcggccatttcccgacgccgatccacaagtggaa 250 Query: 135 cctgccaaatctgccggagggcactgaagtatggatcaagcgggatgatctgtccggtat 194 ||||| ||| ||||| | ||||| || || ||||||||||| || || | || || || Sbjct: 251 tctgcccaatttgccgaatggcacggaggtgtggatcaagcgagacgacatctcaggcat 310 Query: 195 gcagctgagcgggaacaaggtccggaagctcgagtttctgctgtcagatgccgtcgcgca 254 |||| ||||||||||||||||||||||||||||||| ||| || |||||||||||||||| Sbjct: 311 gcagttgagcgggaacaaggtccggaagctcgagttcctgatggcagatgccgtcgcgca 370 Query: 255 gggtgcagactgcgttatcactgtcggtggtatccagagcaaccattgccgtgcgacggc 314 ||| || ||||||||||| ||||| ||||| ||||||||||| || |||||||| || || Sbjct: 371 gggcgctgactgcgttataactgtaggtggcatccagagcaatcactgccgtgccaccgc 430 Query: 315 agtggctgccaagtatctcaatcttgactgctatttgatactgcgtacttccaagcttct 374 ||||||||| |||||| | |||||||| || ||| |||||||||| || ||||||||||| Sbjct: 431 agtggctgcaaagtatataaatcttgattgttatctgatactgcgcacatccaagcttct 490 Query: 375 tgtggatgaggaccctggtttggtcggcaatctccttgttgagagactgctgggagcaca 434 ||||||| |||||||||||||||| || |||||||||||||||||| || ||||||| || Sbjct: 491 tgtggataaggaccctggtttggttgggaatctccttgttgagagattggtgggagcgca 550 Query: 435 cattgatcttgtctcaaaagaagagtatgggaaaattggcagtgtggctttagccgactt 494 ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| Sbjct: 551 tattgatcttgtttcaaaagaagaatatggaaaaattggcagtgtggctttagcggactt 610 Query: 495 gcttaaaaagaggcttttggaagaaggacggaagccatatgtgattcctgttggtggatc 554 ||| ||||||| ||||||||||||||| || || |||||||| ||||||||||||||||| Sbjct: 611 gctgaaaaagaagcttttggaagaaggccgaaaaccatatgttattcctgttggtggatc 670 Query: 555 caattcacttggaacttggggatatattgaagcagtaagagagcttgaaca 605 || || || ||||||||||||||||| |||||| |||| ||| ||||||| Sbjct: 671 aaactctctaggaacttggggatatatagaagcaataagggagattgaaca 721
>dbj|AK071811.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113F04, full insert sequence Length = 1417 Score = 561 bits (283), Expect = e-157 Identities = 515/591 (87%), Gaps = 1/591 (0%) Strand = Plus / Plus Query: 15 atcggcagcttcctctccaagnaagccctacgcgccgccgtcctgggcctcgcacctcgc 74 ||||| ||||||||||||||| | ||| ||||||||||||||||||||||||||||| | Sbjct: 131 atcgggagcttcctctccaag-aggccgtacgcgccgccgtcctgggcctcgcacctgtc 189 Query: 75 cctcgcccctccccacaccttctccctcggccatttcccaaccccgattcacaagtggaa 134 || |||||| | || |||||||| |||||||||||||| || ||||| ||||||||||| Sbjct: 190 ccccgccccctcgcagaccttctcgctcggccatttcccgacgccgatccacaagtggaa 249 Query: 135 cctgccaaatctgccggagggcactgaagtatggatcaagcgggatgatctgtccggtat 194 ||||| ||| ||||| | ||||| || || ||||||||||| || || | || || || Sbjct: 250 tctgcccaatttgccgaatggcacggaggtgtggatcaagcgagacgacatctcaggcat 309 Query: 195 gcagctgagcgggaacaaggtccggaagctcgagtttctgctgtcagatgccgtcgcgca 254 |||| ||||||||||||||||||||||||||||||| ||| || |||||||||||||||| Sbjct: 310 gcagttgagcgggaacaaggtccggaagctcgagttcctgatggcagatgccgtcgcgca 369 Query: 255 gggtgcagactgcgttatcactgtcggtggtatccagagcaaccattgccgtgcgacggc 314 ||| || ||||||||||| ||||| ||||| ||||||||||| || |||||||| || || Sbjct: 370 gggcgctgactgcgttataactgtaggtggcatccagagcaatcactgccgtgccaccgc 429 Query: 315 agtggctgccaagtatctcaatcttgactgctatttgatactgcgtacttccaagcttct 374 ||||||||| |||||| | |||||||| || ||| |||||||||| || ||||||||||| Sbjct: 430 agtggctgcaaagtatataaatcttgattgttatctgatactgcgcacatccaagcttct 489 Query: 375 tgtggatgaggaccctggtttggtcggcaatctccttgttgagagactgctgggagcaca 434 ||||||| |||||||||||||||| || |||||||||||||||||| || ||||||| || Sbjct: 490 tgtggataaggaccctggtttggttgggaatctccttgttgagagattggtgggagcgca 549 Query: 435 cattgatcttgtctcaaaagaagagtatgggaaaattggcagtgtggctttagccgactt 494 ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| Sbjct: 550 tattgatcttgtttcaaaagaagaatatggaaaaattggcagtgtggctttagcggactt 609 Query: 495 gcttaaaaagaggcttttggaagaaggacggaagccatatgtgattcctgttggtggatc 554 ||| ||||||| ||||||||||||||| || || |||||||| ||||||||||||||||| Sbjct: 610 gctgaaaaagaagcttttggaagaaggccgaaaaccatatgttattcctgttggtggatc 669 Query: 555 caattcacttggaacttggggatatattgaagcagtaagagagcttgaaca 605 || || || ||||||||||||||||| |||||| |||| ||| ||||||| Sbjct: 670 aaactctctaggaacttggggatatatagaagcaataagggagattgaaca 720
>gb|BT019000.1| Zea mays clone Contig488.F mRNA sequence Length = 1411 Score = 470 bits (237), Expect = e-129 Identities = 496/581 (85%), Gaps = 1/581 (0%) Strand = Plus / Plus Query: 22 gcttcctctccaagnaagccctacgcgccgccgtcctgggcctcgcacctcgccctcgcc 81 |||||||||| ||| ||||| ||||||||||||| |||||| |||||||| ||| | Sbjct: 97 gcttcctctcgaag-aagccttacgcgccgccgttgtgggccacgcacctctcccccatg 155 Query: 82 cctccccacaccttctccctcggccatttcccaaccccgattcacaagtggaacctgcca 141 ||| ||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 156 ccttgccataccttctcgctcggccatttcccaacaccgattcacaagtggaatctgccc 215 Query: 142 aatctgccggagggcactgaagtatggatcaagcgggatgatctgtccggtatgcagctg 201 ||| ||||||| || || ||||| ||||||||||| || ||| | || || |||||| || Sbjct: 216 aatttgccggaaggaacggaagtgtggatcaagcgagacgatttatcaggcatgcagttg 275 Query: 202 agcgggaacaaggtccggaagctcgagtttctgctgtcagatgccgtcgcgcagggtgca 261 || || ||||||||||||||||| ||||| || || |||||||||| || || || ||| Sbjct: 276 agtggaaacaaggtccggaagctggagttcttgatggcagatgccgtagcacaaggcgca 335 Query: 262 gactgcgttatcactgtcggtggtatccagagcaaccattgccgtgcgacggcagtggct 321 ||||||||||| ||||| || ||||| ||||| ||||| |||||||| || || |||||| Sbjct: 336 gactgcgttattactgttgggggtatacagagtaaccactgccgtgccacagccgtggct 395 Query: 322 gccaagtatctcaatcttgactgctatttgatactgcgtacttccaagcttcttgtggat 381 || ||||||||||||||||| ||||| ||||||| ||||| |||||||||||||||||| Sbjct: 396 gctaagtatctcaatcttgattgctacctgatactacgtacctccaagcttcttgtggat 455 Query: 382 gaggaccctggtttggtcggcaatctccttgttgagagactgctgggagcacacattgat 441 |||||||||||||||| |||||||| ||||| |||||||| | || |||||| ||||| Sbjct: 456 aaggaccctggtttggttggcaatcttcttgtcgagagactagttggggcacacgttgat 515 Query: 442 cttgtctcaaaagaagagtatgggaaaattggcagtgtggctttagccgacttgcttaaa 501 ||||| ||||||||||| ||||| |||||||| |||||||||||||| ||| |||| ||| Sbjct: 516 cttgtgtcaaaagaagaatatggaaaaattggtagtgtggctttagctgacctgctgaaa 575 Query: 502 aagaggcttttggaagaaggacggaagccatatgtgattcctgttggtggatccaattca 561 || |||||| |||||||||| ||||||| ||||||||||||||||||||||| || ||| Sbjct: 576 aaaaggcttctggaagaagggaggaagccgtatgtgattcctgttggtggatcaaactca 635 Query: 562 cttggaacttggggatatattgaagcagtaagagagcttga 602 | |||||||||||||||||||| ||| |||| ||| |||| Sbjct: 636 ttgggaacttggggatatattgaggcaataagggagattga 676
>gb|AY106365.1| Zea mays PCO076269 mRNA sequence Length = 1286 Score = 470 bits (237), Expect = e-129 Identities = 496/581 (85%), Gaps = 1/581 (0%) Strand = Plus / Plus Query: 22 gcttcctctccaagnaagccctacgcgccgccgtcctgggcctcgcacctcgccctcgcc 81 |||||||||| ||| ||||| ||||||||||||| |||||| |||||||| ||| | Sbjct: 129 gcttcctctcgaag-aagccttacgcgccgccgttgtgggccacgcacctctcccccatg 187 Query: 82 cctccccacaccttctccctcggccatttcccaaccccgattcacaagtggaacctgcca 141 ||| ||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 188 ccttgccataccttctcgctcggccatttcccaacaccgattcacaagtggaatctgccc 247 Query: 142 aatctgccggagggcactgaagtatggatcaagcgggatgatctgtccggtatgcagctg 201 ||| ||||||| || || ||||| ||||||||||| || ||| | || || |||||| || Sbjct: 248 aatttgccggaaggaacggaagtgtggatcaagcgagacgatttatcaggcatgcagttg 307 Query: 202 agcgggaacaaggtccggaagctcgagtttctgctgtcagatgccgtcgcgcagggtgca 261 || || ||||||||||||||||| ||||| || || ||||||| || || || || ||| Sbjct: 308 agtggaaacaaggtccggaagctggagttcttgatggcagatgctgtagcacaaggcgca 367 Query: 262 gactgcgttatcactgtcggtggtatccagagcaaccattgccgtgcgacggcagtggct 321 ||||||||||| ||||| || ||||| ||||| ||||| |||||||| || || |||||| Sbjct: 368 gactgcgttattactgttgggggtatacagagtaaccactgccgtgccacagccgtggct 427 Query: 322 gccaagtatctcaatcttgactgctatttgatactgcgtacttccaagcttcttgtggat 381 || ||||||||||||||||| ||||| ||||||| ||||| |||||||||||||||||| Sbjct: 428 gctaagtatctcaatcttgattgctacctgatactacgtacctccaagcttcttgtggat 487 Query: 382 gaggaccctggtttggtcggcaatctccttgttgagagactgctgggagcacacattgat 441 |||||||||||||||| |||||||| ||||| |||||||| | || |||||| ||||| Sbjct: 488 aaggaccctggtttggttggcaatcttcttgtcgagagactagttggggcacacgttgat 547 Query: 442 cttgtctcaaaagaagagtatgggaaaattggcagtgtggctttagccgacttgcttaaa 501 ||||| ||||||||||| ||||| ||||||||||||||||||||||| ||| |||| ||| Sbjct: 548 cttgtgtcaaaagaagaatatggaaaaattggcagtgtggctttagctgacctgctgaaa 607 Query: 502 aagaggcttttggaagaaggacggaagccatatgtgattcctgttggtggatccaattca 561 || |||||| |||||||||| ||||||| ||||||||||||||||||||||| || ||| Sbjct: 608 aaaaggcttctggaagaagggaggaagccgtatgtgattcctgttggtggatcaaactca 667 Query: 562 cttggaacttggggatatattgaagcagtaagagagcttga 602 | |||||||||||||||||||| ||| |||| ||| |||| Sbjct: 668 ttgggaacttggggatatattgaggcaataagggagattga 708
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 184 bits (93), Expect = 2e-43 Identities = 156/177 (88%) Strand = Plus / Minus Query: 193 atgcagctgagcgggaacaaggtccggaagctcgagtttctgctgtcagatgccgtcgcg 252 |||||| ||||||||||||||||||||||||||||||| ||| || |||||||||||||| Sbjct: 32666296 atgcagttgagcgggaacaaggtccggaagctcgagttcctgatggcagatgccgtcgcg 32666237 Query: 253 cagggtgcagactgcgttatcactgtcggtggtatccagagcaaccattgccgtgcgacg 312 ||||| || ||||||||||| ||||| ||||| ||||||||||| || |||||||| || Sbjct: 32666236 cagggcgctgactgcgttataactgtaggtggcatccagagcaatcactgccgtgccacc 32666177 Query: 313 gcagtggctgccaagtatctcaatcttgactgctatttgatactgcgtacttccaag 369 ||||||||||| |||||| | |||||||| || ||| |||||||||| || |||||| Sbjct: 32666176 gcagtggctgcaaagtatataaatcttgattgttatctgatactgcgcacatccaag 32666120 Score = 147 bits (74), Expect = 5e-32 Identities = 104/114 (91%) Strand = Plus / Minus Query: 368 agcttcttgtggatgaggaccctggtttggtcggcaatctccttgttgagagactgctgg 427 |||||||||||||| |||||||||||||||| || |||||||||||||||||| || ||| Sbjct: 32666010 agcttcttgtggataaggaccctggtttggttgggaatctccttgttgagagattggtgg 32665951 Query: 428 gagcacacattgatcttgtctcaaaagaagagtatgggaaaattggcagtgtgg 481 |||| || ||||||||||| ||||||||||| ||||| |||||||||||||||| Sbjct: 32665950 gagcgcatattgatcttgtttcaaaagaagaatatggaaaaattggcagtgtgg 32665897 Score = 99.6 bits (50), Expect = 1e-17 Identities = 83/94 (88%) Strand = Plus / Minus Query: 480 ggctttagccgacttgcttaaaaagaggcttttggaagaaggacggaagccatatgtgat 539 ||||||||| |||||||| ||||||| ||||||||||||||| || || |||||||| || Sbjct: 32665506 ggctttagcggacttgctgaaaaagaagcttttggaagaaggccgaaaaccatatgttat 32665447 Query: 540 tcctgttggtggatccaattcacttggaacttgg 573 ||||||||||||||| || || || ||||||||| Sbjct: 32665446 tcctgttggtggatcaaactctctaggaacttgg 32665413 Score = 83.8 bits (42), Expect = 6e-13 Identities = 82/94 (87%), Gaps = 1/94 (1%) Strand = Plus / Minus Query: 15 atcggcagcttcctctccaagnaagccctacgcgccgccgtcctgggcctcgcacctcgc 74 ||||| ||||||||||||||| | ||| ||||||||||||||||||||||||||||| | Sbjct: 32666817 atcgggagcttcctctccaag-aggccgtacgcgccgccgtcctgggcctcgcacctgtc 32666759 Query: 75 cctcgcccctccccacaccttctccctcggccat 108 || |||||| | || |||||||| ||||||||| Sbjct: 32666758 ccccgccccctcgcagaccttctcgctcggccat 32666725 Score = 44.1 bits (22), Expect = 0.53 Identities = 55/66 (83%) Strand = Plus / Minus Query: 109 ttcccaaccccgattcacaagtggaacctgccaaatctgccggagggcactgaagtatgg 168 ||||| || ||||| ||||||||||| ||||| ||| ||||| | ||||| || || ||| Sbjct: 32666577 ttcccgacgccgatccacaagtggaatctgcccaatttgccgaatggcacggaggtgtgg 32666518 Query: 169 atcaag 174 |||||| Sbjct: 32666517 atcaag 32666512 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 cgccgccgtcctgggcctcgc 67 ||||||||||||||||||||| Sbjct: 30488446 cgccgccgtcctgggcctcgc 30488426
>dbj|AP004068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1611_C08 Length = 135386 Score = 184 bits (93), Expect = 2e-43 Identities = 156/177 (88%) Strand = Plus / Minus Query: 193 atgcagctgagcgggaacaaggtccggaagctcgagtttctgctgtcagatgccgtcgcg 252 |||||| ||||||||||||||||||||||||||||||| ||| || |||||||||||||| Sbjct: 93667 atgcagttgagcgggaacaaggtccggaagctcgagttcctgatggcagatgccgtcgcg 93608 Query: 253 cagggtgcagactgcgttatcactgtcggtggtatccagagcaaccattgccgtgcgacg 312 ||||| || ||||||||||| ||||| ||||| ||||||||||| || |||||||| || Sbjct: 93607 cagggcgctgactgcgttataactgtaggtggcatccagagcaatcactgccgtgccacc 93548 Query: 313 gcagtggctgccaagtatctcaatcttgactgctatttgatactgcgtacttccaag 369 ||||||||||| |||||| | |||||||| || ||| |||||||||| || |||||| Sbjct: 93547 gcagtggctgcaaagtatataaatcttgattgttatctgatactgcgcacatccaag 93491 Score = 147 bits (74), Expect = 5e-32 Identities = 104/114 (91%) Strand = Plus / Minus Query: 368 agcttcttgtggatgaggaccctggtttggtcggcaatctccttgttgagagactgctgg 427 |||||||||||||| |||||||||||||||| || |||||||||||||||||| || ||| Sbjct: 93381 agcttcttgtggataaggaccctggtttggttgggaatctccttgttgagagattggtgg 93322 Query: 428 gagcacacattgatcttgtctcaaaagaagagtatgggaaaattggcagtgtgg 481 |||| || ||||||||||| ||||||||||| ||||| |||||||||||||||| Sbjct: 93321 gagcgcatattgatcttgtttcaaaagaagaatatggaaaaattggcagtgtgg 93268 Score = 99.6 bits (50), Expect = 1e-17 Identities = 83/94 (88%) Strand = Plus / Minus Query: 480 ggctttagccgacttgcttaaaaagaggcttttggaagaaggacggaagccatatgtgat 539 ||||||||| |||||||| ||||||| ||||||||||||||| || || |||||||| || Sbjct: 92877 ggctttagcggacttgctgaaaaagaagcttttggaagaaggccgaaaaccatatgttat 92818 Query: 540 tcctgttggtggatccaattcacttggaacttgg 573 ||||||||||||||| || || || ||||||||| Sbjct: 92817 tcctgttggtggatcaaactctctaggaacttgg 92784 Score = 83.8 bits (42), Expect = 6e-13 Identities = 82/94 (87%), Gaps = 1/94 (1%) Strand = Plus / Minus Query: 15 atcggcagcttcctctccaagnaagccctacgcgccgccgtcctgggcctcgcacctcgc 74 ||||| ||||||||||||||| | ||| ||||||||||||||||||||||||||||| | Sbjct: 94188 atcgggagcttcctctccaag-aggccgtacgcgccgccgtcctgggcctcgcacctgtc 94130 Query: 75 cctcgcccctccccacaccttctccctcggccat 108 || |||||| | || |||||||| ||||||||| Sbjct: 94129 ccccgccccctcgcagaccttctcgctcggccat 94096 Score = 44.1 bits (22), Expect = 0.53 Identities = 55/66 (83%) Strand = Plus / Minus Query: 109 ttcccaaccccgattcacaagtggaacctgccaaatctgccggagggcactgaagtatgg 168 ||||| || ||||| ||||||||||| ||||| ||| ||||| | ||||| || || ||| Sbjct: 93948 ttcccgacgccgatccacaagtggaatctgcccaatttgccgaatggcacggaggtgtgg 93889 Query: 169 atcaag 174 |||||| Sbjct: 93888 atcaag 93883
>gb|DQ175872.1| Hordeum vulgare clone DsD18 Ds insertion site flanking region genomic sequence Length = 510 Score = 111 bits (56), Expect = 3e-21 Identities = 80/84 (95%), Gaps = 3/84 (3%) Strand = Plus / Plus Query: 432 acacattgatcttgtctcaaaagaagagtatgggaaaattggc-agtgtggc-tttagcc 489 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 410 acacattgatcttgtctcaaaagaagagtatgggaaaattggcaagtgtggcttttagcc 469 Query: 490 gac-ttgcttaaaaagaggctttt 512 ||| ||||||||||||| |||||| Sbjct: 470 gactttgcttaaaaagaagctttt 493
>gb|DQ175879.1| Hordeum vulgare clone DsD31 Ds insertion site flanking region genomic sequence Length = 717 Score = 109 bits (55), Expect = 1e-20 Identities = 79/83 (95%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 433 cacattgatcttgtctcaaaagaagagtatgggaaaattggc-agtgtggc-tttagccg 490 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 319 cacattgatcttgtctcaaaagaagagtatgggaaaattggcaagtgtggcttttagccg 378 Query: 491 ac-ttgcttaaaaagaggctttt 512 || ||||||||||||| |||||| Sbjct: 379 actttgcttaaaaagaagctttt 401
>gb|AY154652.1| Betula pendula putative 1-aminocyclopropane-1-carboxylate deaminase (ACD) mRNA, partial cds Length = 686 Score = 79.8 bits (40), Expect = 1e-11 Identities = 190/240 (79%) Strand = Plus / Plus Query: 239 cagatgccgtcgcgcagggtgcagactgcgttatcactgtcggtggtatccagagcaacc 298 |||||||||| ||||||||||| || || || || || |||| || || || ||||||| Sbjct: 17 cagatgccgtggcgcagggtgctgattgtgtcataacaatcggaggcatacaaagcaacc 76 Query: 299 attgccgtgcgacggcagtggctgccaagtatctcaatcttgactgctatttgatactgc 358 | |||||||| || |||||| |||| |||||||| ||||||||||| ||| | ||||| | Sbjct: 77 actgccgtgcaactgcagtgactgcaaagtatctgaatcttgactgttatcttatactac 136 Query: 359 gtacttccaagcttcttgtggatgaggaccctggtttggtcggcaatctccttgttgaga 418 | || || ||| | |||||||| | || ||||| ||| ||||||||||| |||||| Sbjct: 137 gaacctctaaggtccttgtggaccaagatcctggattgactggcaatctcctggttgagc 196 Query: 419 gactgctgggagcacacattgatcttgtctcaaaagaagagtatgggaaaattggcagtg 478 | | | ||||| || ||||||||| | ||||||||||| |||| |||||||| |||| Sbjct: 197 gtttagttggagctcatattgatcttatttcaaaagaagaatatgcaaaaattggaagtg 256 Score = 48.1 bits (24), Expect = 0.034 Identities = 51/60 (85%) Strand = Plus / Plus Query: 528 gccatatgtgattcctgttggtggatccaattcacttggaacttggggatatattgaagc 587 ||||||||| ||||||||||||||||| || || || || || ||||| ||||| ||||| Sbjct: 306 gccatatgttattcctgttggtggatcaaactccctagggacctggggctatatcgaagc 365
>gb|BT013578.1| Lycopersicon esculentum clone 132323R, mRNA sequence Length = 1492 Score = 69.9 bits (35), Expect = 9e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 526 aagccatatgtgattcctgttggtggatccaattcacttggaacttggggatatattga 584 ||||||||||| || |||||||||||||||||||| || ||||| ||||| |||||||| Sbjct: 683 aagccatatgtcatccctgttggtggatccaattctctaggaacctggggctatattga 741 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 427 ggagcacacattgatcttgtctcaaaagaagagtatg 463 |||||||||||||||||||| ||||||||||| |||| Sbjct: 584 ggagcacacattgatcttgtttcaaaagaagaatatg 620 Score = 48.1 bits (24), Expect = 0.034 Identities = 141/180 (78%) Strand = Plus / Plus Query: 88 cacaccttctccctcggccatttcccaaccccgattcacaagtggaacctgccaaatctg 147 |||||||| || || || ||||| || || || |||||||||||||||||||| ||| | Sbjct: 245 cacaccttttcgcttggtcattttccgactccaattcacaagtggaacctgcctaattta 304 Query: 148 ccggagggcactgaagtatggatcaagcgggatgatctgtccggtatgcagctgagcggg 207 ||| || ||| || || ||| | ||||| |||||| |||| || ||||| | || || Sbjct: 305 ccgaagaacaccgaggtttggttaaagcgtgatgatatgtcaggaatgcaattaagtgga 364 Query: 208 aacaaggtccggaagctcgagtttctgctgtcagatgccgtcgcgcagggtgcagactgc 267 ||||||||| | ||||| ||||| || || ||||||| || || |||||||| |||||| Sbjct: 365 aacaaggtcagaaagctggagttcttgttggcagatgctgtagcacagggtgctgactgc 424
>ref|NM_103738.4| Arabidopsis thaliana catalytic AT1G48420 mRNA, complete cds Length = 1375 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 358 cgtacttccaagcttcttgtggatgaggaccctggtttggtcggcaatctccttgt 413 ||||||||||||||||||| ||||| || ||||| ||||| || ||||||||||| Sbjct: 425 cgtacttccaagcttcttgctgatgaagatcctggattggttgggaatctccttgt 480
>gb|AY093325.1| Arabidopsis thaliana unknown protein (At1g48420) mRNA, complete cds Length = 1224 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 358 cgtacttccaagcttcttgtggatgaggaccctggtttggtcggcaatctccttgt 413 ||||||||||||||||||| ||||| || ||||| ||||| || ||||||||||| Sbjct: 367 cgtacttccaagcttcttgctgatgaagatcctggattggttgggaatctccttgt 422
>gb|AY062659.1| Arabidopsis thaliana Unknown protein (At1g48420; F11A17.2) mRNA, complete cds Length = 1295 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 358 cgtacttccaagcttcttgtggatgaggaccctggtttggtcggcaatctccttgt 413 ||||||||||||||||||| ||||| || ||||| ||||| || ||||||||||| Sbjct: 422 cgtacttccaagcttcttgctgatgaagatcctggattggttgggaatctccttgt 477
>emb|BX814218.1|CNS0ADFS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB61ZD10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1294 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 358 cgtacttccaagcttcttgtggatgaggaccctggtttggtcggcaatctccttgt 413 ||||||||||||||||||| ||||| || ||||| ||||| || ||||||||||| Sbjct: 401 cgtacttccaagcttcttgctgatgaagatcctggattggttgggaatctccttgt 456
>emb|BX817146.1|CNS0AD8B Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH89ZF07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1312 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 358 cgtacttccaagcttcttgtggatgaggaccctggtttggtcggcaatctccttgt 413 ||||||||||||||||||| ||||| || ||||| ||||| || ||||||||||| Sbjct: 415 cgtacttccaagcttcttgctgatgaagatcctggattggttgggaatctccttgt 470
>emb|BX815176.1|CNS0ACUT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS3ZD11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1281 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 358 cgtacttccaagcttcttgtggatgaggaccctggtttggtcggcaatctccttgt 413 ||||||||||||||||||| ||||| || ||||| ||||| || ||||||||||| Sbjct: 359 cgtacttccaagcttcttgctgatgaagatcctggattggttgggaatctccttgt 414
>gb|AC163338.5| Mus musculus BAC clone RP24-574A13 from chromosome 13, complete sequence Length = 149507 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 397 gtcggcaatctccttgttgagag 419 ||||||||||||||||||||||| Sbjct: 107124 gtcggcaatctccttgttgagag 107146
>gb|AC126683.4| Mus musculus BAC clone RP23-62G15 from 6, complete sequence Length = 167297 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 438 tgatcttgtctcaaaagaagag 459 |||||||||||||||||||||| Sbjct: 101536 tgatcttgtctcaaaagaagag 101515
>gb|AC160998.4| Mus musculus BAC clone RP23-78N12 from chromosome 6, complete sequence Length = 279848 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 438 tgatcttgtctcaaaagaagag 459 |||||||||||||||||||||| Sbjct: 66433 tgatcttgtctcaaaagaagag 66412
>gb|AC093420.2| Homo sapiens chromosome 1 clone RP11-282K6, complete sequence Length = 193766 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 72 cgccctcgcccctccccacaccttctccct 101 |||||| |||||||||||||||| |||||| Sbjct: 107198 cgccctagcccctccccacacctgctccct 107227
>ref|XM_391830.2| PREDICTED: Apis mellifera similar to CG15013-PA, isoform A (LOC408277), mRNA Length = 2137 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 59 gggcctcgcacctcgccctcgc 80 |||||||||||||||||||||| Sbjct: 61 gggcctcgcacctcgccctcgc 40
>ref|XM_467623.1| Oryza sativa (japonica cultivar-group), mRNA Length = 558 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 47 cgccgccgtcctgggcctcgc 67 ||||||||||||||||||||| Sbjct: 66 cgccgccgtcctgggcctcgc 86
>gb|AC149292.15| Sus scrofa clone ch242-69g11, complete sequence Length = 215342 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 ggccatttcccaaccccgatt 123 ||||||||||||||||||||| Sbjct: 105212 ggccatttcccaaccccgatt 105192
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643A10 Length = 187931 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 cgccgccgtcctgggcctcgc 67 ||||||||||||||||||||| Sbjct: 454 cgccgccgtcctgggcctcgc 434
>dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0617A09 Length = 134804 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 cgccgccgtcctgggcctcgc 67 ||||||||||||||||||||| Sbjct: 94494 cgccgccgtcctgggcctcgc 94474
>emb|CT010444.10| Mouse DNA sequence from clone RP23-151L20 on chromosome 12, complete sequence Length = 198654 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 432 acacattgatcttgtctcaaaagaa 456 ||||||||||||||||| ||||||| Sbjct: 191310 acacattgatcttgtctgaaaagaa 191334
>gb|AC167172.3| Mus musculus BAC clone RP23-166M7 from chromosome 3, complete sequence Length = 204419 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 431 cacacattgatcttgtctcaaaagaaga 458 ||||||| |||| ||||||||||||||| Sbjct: 120768 cacacatagatcctgtctcaaaagaaga 120741
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ttgccgtgcgacggcagtgg 319 |||||||||||||||||||| Sbjct: 1834841 ttgccgtgcgacggcagtgg 1834822
>gb|AC161225.14| Mus musculus chromosome 5, clone RP23-37G13, complete sequence Length = 165525 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 cccctccccacaccttctcc 99 |||||||||||||||||||| Sbjct: 98322 cccctccccacaccttctcc 98303
>ref|XM_470712.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1341 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 acattgatcttgtctcaaaa 453 |||||||||||||||||||| Sbjct: 659 acattgatcttgtctcaaaa 678
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 acattgatcttgtctcaaaa 453 |||||||||||||||||||| Sbjct: 14690352 acattgatcttgtctcaaaa 14690333
>gb|AC126280.4| Mus musculus BAC clone RP23-10P23 from 16, complete sequence Length = 211237 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 gatcttgtctcaaaagaaga 458 |||||||||||||||||||| Sbjct: 195921 gatcttgtctcaaaagaaga 195940
>gb|AC163720.2| Mus musculus BAC clone RP23-424C5 from chromosome 16, complete sequence Length = 206284 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 gatcttgtctcaaaagaaga 458 |||||||||||||||||||| Sbjct: 120382 gatcttgtctcaaaagaaga 120363
>gb|AC160638.6| Mus musculus BAC clone RP23-99K6 from chromosome 15, complete sequence Length = 218870 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 ggcactgaagtatggatcaa 173 |||||||||||||||||||| Sbjct: 65436 ggcactgaagtatggatcaa 65417
>ref|XM_791619.1| PREDICTED: Strongylocentrotus purpuratus similar to UDP glucuronosyltransferase 1 family, polypeptide A6B (LOC592078), mRNA Length = 1563 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 528 gccatatgtgattcctgttggtgg 551 |||| ||||||||||||||||||| Sbjct: 804 gccaaatgtgattcctgttggtgg 827
>gb|AC108527.6| Rattus norvegicus 9 BAC CH230-7F11 (Children's Hospital Oakland Research Institute) complete sequence Length = 225777 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 cctccccacaccttctccct 101 |||||||||||||||||||| Sbjct: 19945 cctccccacaccttctccct 19964
>emb|CR380948.1| Candida glabrata strain CBS138 chromosome B complete sequence Length = 502101 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cctcgccctcgcccctcccc 88 |||||||||||||||||||| Sbjct: 480340 cctcgccctcgcccctcccc 480321
>gb|AE005934.1| Caulobacter crescentus CB15 section 260 of 359 of the complete genome Length = 11398 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 cgccgccgtcctgggcctcg 66 |||||||||||||||||||| Sbjct: 10069 cgccgccgtcctgggcctcg 10088
>gb|AC116154.2| Homo sapiens chromosome 8, clone RP11-927P11, complete sequence Length = 196518 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 cttgtctcaaaagaagagta 461 |||||||||||||||||||| Sbjct: 57075 cttgtctcaaaagaagagta 57056
>gb|AC117379.3| Homo sapiens 3 BAC RP11-392C7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181191 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 cccctccccacaccttctcc 99 |||||||||||||||||||| Sbjct: 146786 cccctccccacaccttctcc 146767
>gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genomic sequence, complete sequence Length = 130306 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 acattgatcttgtctcaaaa 453 |||||||||||||||||||| Sbjct: 29264 acattgatcttgtctcaaaa 29245
>gb|DQ156348.1| Uncultured marine group II euryarchaeote HF70_59C08 clone fosmid HF70_59C08, complete sequence Length = 37383 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 accccgattcacaagtggaa 134 |||||||||||||||||||| Sbjct: 3816 accccgattcacaagtggaa 3797
>dbj|AB168344.1| Macaca fascicularis testis cDNA clone: QtsA-11367, similar to human hypothetical protein MGC4189 (MGC4189), mRNA, RefSeq: NM_032308.1 Length = 942 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cctcgccctcgcccctcccc 88 |||||||||||||||||||| Sbjct: 26 cctcgccctcgcccctcccc 7
>emb|BX323857.16| Mouse DNA sequence from clone RP23-12C2 on chromosome 4, complete sequence Length = 104942 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 gatcttgtctcaaaagaaga 458 |||||||||||||||||||| Sbjct: 4978 gatcttgtctcaaaagaaga 4959
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 acattgatcttgtctcaaaa 453 |||||||||||||||||||| Sbjct: 14685286 acattgatcttgtctcaaaa 14685267
>gb|AC110619.3| Homo sapiens BAC clone RP11-649N20 from 2, complete sequence Length = 161830 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 cgcccctccccacaccttctccct 101 ||||||||||||||||| |||||| Sbjct: 98849 cgcccctccccacacctcctccct 98826
>gb|AF076495.1|AF076495 Oryza sativa cystathionine gamma-synthase (CGS1) mRNA, partial cds; nuclear gene for chloroplast product Length = 1278 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 acattgatcttgtctcaaaa 453 |||||||||||||||||||| Sbjct: 403 acattgatcttgtctcaaaa 422
>gb|AC121343.6| Homo sapiens X BAC RP11-438J7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164000 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 ttgcttaaaaagaggctttt 512 |||||||||||||||||||| Sbjct: 81102 ttgcttaaaaagaggctttt 81121
>emb|AL845440.23| Mouse DNA sequence from clone RP23-294B7 on chromosome 2, complete sequence Length = 188464 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 536 tgattcctgttggtggatccaatt 559 ||||||||| |||||||||||||| Sbjct: 88094 tgattcctgatggtggatccaatt 88071
>dbj|AK060421.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-G06, full insert sequence Length = 1335 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 acattgatcttgtctcaaaa 453 |||||||||||||||||||| Sbjct: 54 acattgatcttgtctcaaaa 73
>gb|AC140224.4| Mus musculus BAC clone RP24-483E8 from 1, complete sequence Length = 175026 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 gatcttgtctcaaaagaaga 458 |||||||||||||||||||| Sbjct: 58287 gatcttgtctcaaaagaaga 58268
>emb|AM160695.1| Unidentified microorganism metagenome environmental cosmid clone 10B03, sub clone 10B03-P1 Length = 778 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 tatggatcaagcgggatgat 183 |||||||||||||||||||| Sbjct: 447 tatggatcaagcgggatgat 428
>gb|M18043.1|CHKCFOS Chicken c-fos proto-oncogene, complete cds Length = 3858 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 cctcgccctcgcccctcccc 88 |||||||||||||||||||| Sbjct: 296 cctcgccctcgcccctcccc 315
>emb|AL805967.7| Mouse DNA sequence from clone RP23-450K9 on chromosome X, complete sequence Length = 189710 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 gatcttgtctcaaaagaagagtat 462 |||||| ||||||||||||||||| Sbjct: 134798 gatcttttctcaaaagaagagtat 134775
>emb|AL606920.5| Mouse DNA sequence from clone RP23-183J6 on chromosome 3, complete sequence Length = 89297 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 431 cacacattgatcttgtctcaaaagaaga 458 ||||||| |||| ||||||||||||||| Sbjct: 66117 cacacatagatcctgtctcaaaagaaga 66144
>emb|AL772386.4| Mouse DNA sequence from clone RP23-89G22 on chromosome 15, complete sequence Length = 149807 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 416 agagactgctgggagcacacattg 439 |||| ||||||||||||||||||| Sbjct: 76440 agaggctgctgggagcacacattg 76463
>dbj|AP004287.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1471H7 Length = 172543 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 cttgtctcaaaagaagagta 461 |||||||||||||||||||| Sbjct: 152148 cttgtctcaaaagaagagta 152129
>emb|AL592042.9| Mouse DNA sequence from clone RP23-380K13 on chromosome 2, complete sequence Length = 84122 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 gatcttgtctcaaaagaaga 458 |||||||||||||||||||| Sbjct: 73744 gatcttgtctcaaaagaaga 73763 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,676,346 Number of Sequences: 3902068 Number of extensions: 4676346 Number of successful extensions: 87237 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87019 Number of HSP's gapped (non-prelim): 205 length of query: 605 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 582 effective length of database: 17,143,297,704 effective search space: 9977399263728 effective search space used: 9977399263728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)