ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal37j16 |
|---|---|
| Clone Library Name | barley_pub |
>FILA_MOUSE (P11088) Filaggrin (Fragment)| Length = 336 Score = 35.0 bits (79), Expect = 0.19 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 11/74 (14%) Frame = +2 Query: 230 QGHEVEHQHQGRGGLPRLRHREQ-----GHWPGHQ------ALPRPVPPCASGAVQPGLP 376 +GH+ +HQHQ P HR+Q GH HQ A PR S + Sbjct: 176 RGHQHQHQHQHEHEQPESGHRQQQSSGRGHQGAHQEQGRDSARPRGSNQGHSSSRHQADS 235 Query: 377 GRVGAVDGEQGRGQ 418 RV A G GRGQ Sbjct: 236 PRVSARSGSGGRGQ 249
>ACSA_DROME (Q9VP61) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA| ligase) (Acyl-activating enzyme) (Acetyl-CoA synthetase) (ACS) (AceCS) Length = 670 Score = 32.7 bits (73), Expect = 0.95 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +3 Query: 306 GQAIKHSLGQSHPVRLVPYNPDFLDESVLWTESRD 410 G +++ + SH R+ P PD ++E + WT+ RD Sbjct: 221 GHSVEKCIVVSHLKRVTPCQPDHVEEEIPWTDDRD 255
>SPD2_NEPCL (P46804) Spidroin 2 (Dragline silk fibroin 2) (Fragment)| Length = 627 Score = 32.3 bits (72), Expect = 1.2 Identities = 19/51 (37%), Positives = 23/51 (45%) Frame = +2 Query: 257 QGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQPGLPGRVGAVDGEQG 409 QG GG + G+ PG Q L P A+ A PG G G G+QG Sbjct: 218 QGPGGYGPGQQGPGGYGPGQQGLSGPGSAAAAAAAGPGQQGPGGYGPGQQG 268
>SYK_HAEDU (Q7VLU5) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 498 Score = 32.0 bits (71), Expect = 1.6 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 11/83 (13%) Frame = +3 Query: 255 IKDEEGYPAFAIVNKATGQAIKHSLGQ-----SHPVRLVPY------NPDFLDESVLWTE 401 I+ ++ + A+VN + +H L Q +HP + P NP+ D L+ Sbjct: 354 IEVQKSWGLGAVVNAIFEEVAEHQLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIG 413 Query: 402 SRDVGNGFRCVRMVNNIYLNFDA 470 R++GNGF + + FDA Sbjct: 414 GREIGNGFSELNDAEDQAARFDA 436
>FRAT1_MOUSE (P70339) Proto-oncogene FRAT1 (Frequently rearranged in advanced| T-cell lymphomas) (Frat-1) Length = 274 Score = 31.6 bits (70), Expect = 2.1 Identities = 25/55 (45%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Frame = +2 Query: 5 RXLRLVRDGDAGVRAP-GAVRHVAGERRRQLRRSAD---AAAAYGEDLLPRQPQL 157 R LR + G AP GAVR V GER R RSA A + G LP+QP L Sbjct: 88 RLLRPTGSAETGNPAPPGAVRCVLGERGRVRGRSAPYCVAEISPGASALPQQPGL 142
>FOXA2_BRARE (Q07342) Forkhead box protein A2 (Axial protein)| Length = 409 Score = 31.6 bits (70), Expect = 2.1 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 3/125 (2%) Frame = +3 Query: 60 YGMSQVNVDGNCGGRPMPPQPTVKIYCRANPNYA-MSVRNGKVVLAPAN--PKDDYQHWI 230 YG S +N R P+ + Y A P Y+ +S+ + +P+ + WI Sbjct: 129 YGQSNIN-------RSRDPKTYRRSYTHAKPPYSYISLITMAIQQSPSKMLTLSEIYQWI 181 Query: 231 KDMRWSTSIKDEEGYPAFAIVNKATGQAIKHSLGQSHPVRLVPYNPDFLDESVLWTESRD 410 D+ +P + + +I+HSL + VP +PD + WT D Sbjct: 182 MDL-----------FPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPGKGSFWTLHPD 230 Query: 411 VGNGF 425 GN F Sbjct: 231 SGNMF 235
>ELN_RAT (Q99372) Elastin precursor (Tropoelastin)| Length = 870 Score = 31.2 bits (69), Expect = 2.8 Identities = 22/50 (44%), Positives = 22/50 (44%) Frame = +2 Query: 260 GRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQPGLPGRVGAVDGEQG 409 G GG L G PG ALP VP GAV LPG V V G G Sbjct: 490 GAGGAGTLGGLVPGAVPG--ALPGAVPGALPGAVPGALPGAVPGVPGTGG 537
>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)| Length = 1670 Score = 30.8 bits (68), Expect = 3.6 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = -2 Query: 408 PCSPSTAPTRPGSPGCTAPDAQGGTGRGSA*WPG 307 P PS P PGSPG + P +G G WPG Sbjct: 370 PQGPSGPPGVPGSPGSSRPGLRGAPG-----WPG 398
>IF2_LEIXX (Q6AG49) Translation initiation factor IF-2| Length = 916 Score = 30.8 bits (68), Expect = 3.6 Identities = 18/39 (46%), Positives = 19/39 (48%) Frame = -2 Query: 423 SRCPRPCSPSTAPTRPGSPGCTAPDAQGGTGRGSA*WPG 307 S PRP AP RPGSP AP GG +G PG Sbjct: 195 SNIPRP-----APPRPGSPRIGAPRPGGGQRQGGGGRPG 228
>HNF3B_ORYLA (O42097) Hepatocyte nuclear factor 3-beta (HNF-3B) (Me-HNF3B)| (Forkhead box protein A2) Length = 415 Score = 30.8 bits (68), Expect = 3.6 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 3/125 (2%) Frame = +3 Query: 60 YGMSQVNVDGNCGGRPMPPQPTVKIYCRANPNYA-MSVRNGKVVLAPANPKD--DYQHWI 230 YG S +N R P+ + Y A P Y+ +S+ + +P+ + WI Sbjct: 128 YGQSNIN-------RSRDPKTYRRSYTHAKPPYSYISLITMAIQQSPSKMLTLAEIYQWI 180 Query: 231 KDMRWSTSIKDEEGYPAFAIVNKATGQAIKHSLGQSHPVRLVPYNPDFLDESVLWTESRD 410 D+ +P + + +I+HSL + VP +PD + WT D Sbjct: 181 MDL-----------FPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPGKGSFWTLHPD 229 Query: 411 VGNGF 425 GN F Sbjct: 230 SGNMF 234
>IF2_MYCTU (P65131) Translation initiation factor IF-2| Length = 900 Score = 30.4 bits (67), Expect = 4.7 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = -2 Query: 423 SRCPRPCSPSTAPTRPGSPGCTAPDAQGGTGRG 325 +R PRP +P RPG+PG DA GG RG Sbjct: 203 ARPPRPGAPRPGG-RPGAPGAGRSDAGGGNYRG 234
>IF2_MYCBO (P65132) Translation initiation factor IF-2| Length = 900 Score = 30.4 bits (67), Expect = 4.7 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = -2 Query: 423 SRCPRPCSPSTAPTRPGSPGCTAPDAQGGTGRG 325 +R PRP +P RPG+PG DA GG RG Sbjct: 203 ARPPRPGAPRPGG-RPGAPGAGRSDAGGGNYRG 234
>META_ERWCT (Q6D009) Homoserine O-succinyltransferase (EC 2.3.1.46) (Homoserine| O-transsuccinylase) (HTS) Length = 309 Score = 30.4 bits (67), Expect = 4.7 Identities = 18/65 (27%), Positives = 33/65 (50%) Frame = +3 Query: 345 VRLVPYNPDFLDESVLWTESRDVGNGFRCVRMVNNIYLNFDALNGDKYHGGVRDGTEVVL 524 +RL+ +P +D +L +SR+ N +NN Y NFD + + + G + G + L Sbjct: 55 LRLLSNSPLQIDIQLLRIDSRESKN--TPTEHLNNFYCNFDDIQDENFDGLIVTGAPLGL 112 Query: 525 WKWCE 539 +C+ Sbjct: 113 VDFCD 117
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 30.0 bits (66), Expect = 6.2 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%) Frame = +2 Query: 230 QGHEVEHQHQGRGGLPRL-----RHREQGHWPGHQALPRPVPPCASGAVQPGLPGRVGAV 394 QG E +Q + G P +++ +G QA P P+PP +G+++ G G+ G V Sbjct: 357 QGQEGGYQQRPPGQQPNQTQSQGQYQSRGPPQQQQAAPLPLPPQPAGSIKRGTIGKPGQV 416
>YNM4_YEAST (P53919) Hypothetical 54.9 kDa protein in SPC98-TOM70 intergenic| region Length = 492 Score = 30.0 bits (66), Expect = 6.2 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = +3 Query: 48 PPVPYGMSQVNVDGNCGGRPMPPQPTVKIYCRANPNYAMSVRNGKVVLAPANPKDDYQH 224 PP+PYG+ +N N PM QP + + N N+ + +++L + YQH Sbjct: 430 PPLPYGVPPMNQMQN----PMYIQPPPQAPPQGNGNFQQVMELHQILLQQQQQQHQYQH 484
>SPR2F_MOUSE (O70557) Small proline-rich protein 2F| Length = 76 Score = 30.0 bits (66), Expect = 6.2 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = -2 Query: 420 RCPRPCSPSTAPTRPGSPGCTAP 352 +CP PCSPS P P C P Sbjct: 22 KCPEPCSPSVCPEPCPPPKCPEP 44
>COL2_CAEEL (P17656) Cuticle collagen 2 precursor| Length = 301 Score = 30.0 bits (66), Expect = 6.2 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = -2 Query: 414 PRPCSPSTAPTRPGSPGCT-APDAQGGTGRGSA 319 P P P +P +PG PG AP A G G+G++ Sbjct: 104 PGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGAS 136
>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor| Length = 1466 Score = 30.0 bits (66), Expect = 6.2 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +2 Query: 230 QGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQ--PGLPGRVGAVDGE 403 +G + + +G G P L+ + PG P P+ P + + PGLPG GA + Sbjct: 266 RGFDGRNGEKGETGAPGLKG--ENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGND 323 Query: 404 QGRG 415 RG Sbjct: 324 GARG 327
>MUC1_HUMAN (P15941) Mucin-1 precursor (MUC-1) (Polymorphic epithelial mucin)| (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) (H23AG) (Peanut-reactive urinary mucin) (PUM) Length = 1255 Score = 25.0 bits (53), Expect(2) = 7.2 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 10/36 (27%) Frame = -2 Query: 411 RPCSPSTAP----------TRPGSPGCTAPDAQGGT 334 RP STAP TRP +PG TAP A G T Sbjct: 905 RPAPGSTAPPAHGVTSAPDTRP-APGSTAPPAHGVT 939 Score = 23.1 bits (48), Expect(2) = 7.2 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -3 Query: 347 HRVGLAEGVLDGLASGLVHDG 285 H V A G G AS LVH+G Sbjct: 956 HNVTSASGSASGSASTLVHNG 976
>HA33_CLOBO (P46084) Main hemagglutinin component (HA 33 kDa subunit) (HA1)| Length = 285 Score = 29.6 bits (65), Expect = 8.0 Identities = 15/56 (26%), Positives = 27/56 (48%) Frame = +3 Query: 471 LNGDKYHGGVRDGTEVVLWKWCEGDNQRWKIQPYY*AGQRAPCMDRCMHGSRTYAW 638 LN D++ + +VLW+W + Q+W I+ Y + A + +C +R W Sbjct: 157 LNSDRFLSKNLNSQIIVLWQWFDSSRQKWIIE--YNETKSAYTL-KCQENNRYLTW 209
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 29.6 bits (65), Expect = 8.0 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +2 Query: 230 QGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQ--PGLPGRVGAVDGE 403 +G + + +G G P L+ + PG P P+ P + + PGLPG GA + Sbjct: 265 RGFDGRNGEKGETGAPGLKG--ENGLPGDNGAPGPMGPRGAPGERGRPGLPGAAGARGND 322 Query: 404 QGRG 415 RG Sbjct: 323 GARG 326
>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain| Length = 1049 Score = 29.6 bits (65), Expect = 8.0 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +2 Query: 230 QGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQ--PGLPGRVGAVDGE 403 +G + + +G G P L+ + PG P P+ P + + PGLPG GA + Sbjct: 110 RGFDGRNGEKGEPGAPGLKG--ENGVPGEDGAPGPMGPRGAPGERGRPGLPGAAGARGND 167 Query: 404 QGRG 415 RG Sbjct: 168 GARG 171
>LEG3_RABIT (P47845) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)| (IgE-binding protein) (35 kDa lectin) (Carbohydrate-binding protein 35) (CBP 35) (Laminin-binding protein) (Lectin L-29) Length = 241 Score = 29.6 bits (65), Expect = 8.0 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 7/55 (12%) Frame = +2 Query: 248 HQHQGRGGLPRLRHREQGHWPGH-------QALPRPVPPCASGAVQPGLPGRVGA 391 +Q G GG P + G +PGH QA P P P + PG PG GA Sbjct: 27 NQPAGPGGYPGAAY--PGAYPGHAPGAYPGQAPPGPYPGPGAHGAYPGQPGGPGA 79
>HLOX2_HELRO (Q01622) Homeobox protein LOX2 (Fragment)| Length = 429 Score = 29.6 bits (65), Expect = 8.0 Identities = 18/63 (28%), Positives = 28/63 (44%) Frame = +3 Query: 18 SYGMATPGYAPPVPYGMSQVNVDGNCGGRPMPPQPTVKIYCRANPNYAMSVRNGKVVLAP 197 S+G A G+ YG+ + G RP P T C ++ S++ GK+ AP Sbjct: 144 SHGKAFGGHFASSRYGIDDDVISNRTGSRPSSPASTTP-SCENFSPHSPSMKGGKMGSAP 202 Query: 198 ANP 206 + P Sbjct: 203 SYP 205
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 29.6 bits (65), Expect = 8.0 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +2 Query: 230 QGHEVEHQHQGRGGLPRLRHREQGHWPGHQALPRPVPPCASGAVQ--PGLPGRVGAVDGE 403 +G + + +G G P L+ + PG P P+ P + + PGLPG GA + Sbjct: 265 RGFDGRNGEKGETGAPGLKG--ENGLPGDNGAPGPMGPRGAPGERGRPGLPGAAGARGND 322 Query: 404 QGRG 415 RG Sbjct: 323 GARG 326
>CO8A1_RABIT (P14282) Collagen alpha-1(VIII) chain precursor (Endothelial| collagen) Length = 744 Score = 29.6 bits (65), Expect = 8.0 Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 16/78 (20%) Frame = +2 Query: 257 QGRGGLPRLRHREQGHWPGHQALPR----------PVPPCASGAVQPGLPG-----RVGA 391 QG GLP + Q PG P P PP G +PG PG +G Sbjct: 307 QGPPGLPGVGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGVGKPGFPGPKGDRGIGG 366 Query: 392 VDGEQG-RGQRLQVRAHG 442 V G G RG++ V A G Sbjct: 367 VPGALGPRGEKGPVGAPG 384
>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor| Length = 1685 Score = 24.6 bits (52), Expect(2) = 9.0 Identities = 19/63 (30%), Positives = 27/63 (42%) Frame = +3 Query: 27 MATPGYAPPVPYGMSQVNVDGNCGGRPMPPQPTVKIYCRANPNYAMSVRNGKVVLAPANP 206 M PG+ PP P G + G+P P P + +P ++ + GK L P NP Sbjct: 620 MGPPGFGPPGPVGEKGIQGVAGNPGQPGIPGP------KGDPGQTIT-QPGKPGL-PGNP 671 Query: 207 KDD 215 D Sbjct: 672 GRD 674 Score = 23.1 bits (48), Expect(2) = 9.0 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = +2 Query: 308 PGHQALPR-PVPPCASGAVQPGLPGRVGAVDGEQG 409 PG + P P PP A PG PGR+G ++G G Sbjct: 712 PGPKGFPGIPGPPGA-----PGTPGRIG-LEGPPG 740 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,758,352 Number of Sequences: 219361 Number of extensions: 1713359 Number of successful extensions: 8318 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 7009 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8262 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
