No.
Definition
Score (bits)
E Value
1 dbj|AK072081.1| Oryza sativa (japonica cultivar-group) cDNA clon...
519
e-144
2 dbj|AK060388.1| Oryza sativa (japonica cultivar-group) cDNA clon...
519
e-144
3 ref|NM_193993.1| Oryza sativa (japonica cultivar-group), predic...
260
5e-66
4 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
214
3e-52
5 dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic D...
214
3e-52
6 gb|DQ210445.1| Maxillaria concavilabia 18S ribosomal RNA gene, p...
42
2.4
7 gb|DQ210307.1| Maxillaria cerifera 18S ribosomal RNA gene, parti...
42
2.4
8 gb|DQ210167.1| Maxillaria notylioglossa 18S ribosomal RNA gene, ...
42
2.4
9 gb|DQ210117.1| Maxillaria cerifera 18S ribosomal RNA gene, parti...
42
2.4
10 gb|DQ210114.1| Maxillaria notylioglossa 18S ribosomal RNA gene, ...
42
2.4
11 gb|DQ210045.1| Maxillaria neglecta 18S ribosomal RNA gene, parti...
42
2.4
12 emb|AL451136.11| Human DNA sequence from clone RP11-291L19 on ch...
42
2.4
13 ref|XM_500221.1| Yarrowia lipolytica CLIB122, YALI0A18898g predi...
42
2.4
14 emb|AL596169.1| Listeria innocua Clip11262 complete genome, segm...
42
2.4
15 gb|AC108050.5| Homo sapiens BAC clone RP11-331M18 from 4, comple...
42
2.4
16 gb|AY190946.1| Drosophila pseudoobscura clone DPSF01_27_F17 (D14...
42
2.4
17 gb|AY168637.1| Baboon herpesvirus 2 strain X313/860 DNA polymera...
42
2.4
18 gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, comple...
42
2.4
19 emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1...
42
2.4
20 gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
40
9.3
21 emb|Z82072.1|CEW05H12 Caenorhabditis elegans Cosmid W05H12, comp...
40
9.3
22 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
40
9.3
23 dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic D...
40
9.3
24 dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co...
40
9.3
25 dbj|AK111522.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
9.3
26 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
40
9.3
27 emb|AL772425.7|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396...
40
9.3
28 emb|AL844878.4|CNS08CB1 Oryza sativa chromosome 12, . BAC OSJNBb...
40
9.3
>dbj|AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 214 bits (108), Expect = 3e-52
Identities = 135/144 (93%)
Strand = Plus / Minus
Query: 540 aggcattgcgtggtggagaagatattggttctggattccgaagagatctaaagcttatta 599
|||||||||||||||||||||||||||||||||| ||||||||||| || || || ||||
Sbjct: 14493237 aggcattgcgtggtggagaagatattggttctgggttccgaagagacctgaaactcatta 14493178
Query: 600 gtgaagtacaagcaccatttcgtggtgtccggaggttcttttatgtggcgttcattgcag 659
||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||
Sbjct: 14493177 gtgaagtacaagcaccatttcgtggtgtccgaaggttcttttatgtggcgttaactgcag 14493118
Query: 660 cggctggaatttcaacattcttta 683
| ||||||||||||||||||||||
Sbjct: 14493117 cagctggaatttcaacattcttta 14493094
Score = 143 bits (72), Expect = 9e-31
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 403 cagggaagaaagcaaaaaagctgcagattgcttgagaatagctttgcgagattacaatct 462
||||||||||||||| ||||||||||||||||| || | |||| |||||||||| |||||
Sbjct: 14493898 cagggaagaaagcaacaaagctgcagattgcttaaggacagctctgcgagattataatct 14493839
Query: 463 caaatttggcacagtacttaatgatccagacatggcgccattcagggcatcaccagaatt 522
||| ||||| || ||||||||||||| ||| |||| || |||||||||||||| |||||
Sbjct: 14493838 caagtttggtactatacttaatgatcctgacttggcaccgttcagggcatcaccggaatt 14493779
Query: 523 taaggaacttcaagaggagg 542
|||||||||||||| ||||
Sbjct: 14493778 caaggaacttcaagaagagg 14493759
Score = 97.6 bits (49), Expect = 5e-17
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 301 ggtgaaggacgcacttgaacaatttgacaaggccctagagctgaatccaaatcctaccga 360
||||||||| || |||||||||||||| || |||||||||||||||||||||||| ||
Sbjct: 14494086 ggtgaaggatgctcttgaacaatttgagaatgccctagagctgaatccaaatcctgttga 14494027
Query: 361 agcccaagcagcgttctataacaaggcatgctgccatgcat 401
|||||||||||| | || || || ||||||||||||||||
Sbjct: 14494026 agcccaagcagcactatacaataaagcatgctgccatgcat 14493986
Score = 95.6 bits (48), Expect = 2e-16
Identities = 87/100 (87%)
Strand = Plus / Minus
Query: 206 ccgtctccccctccttcgccggagaaggcggtcgaggcggctccgacggcggagtcgtgc 265
||||||||||| || ||||||| ||||| || | ||| | ||||||||||||||||||
Sbjct: 14495804 ccgtctcccccgccatcgccggggaaggaggcggtggctgtcccgacggcggagtcgtgc 14495745
Query: 266 gtcaacctcggcctcgagttcttctccaagggcagggtga 305
|||||||| || |||||| |||||||||||||||||||||
Sbjct: 14495744 gtcaacctgggactcgagctcttctccaagggcagggtga 14495705
Score = 40.1 bits (20), Expect = 9.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 636 tcttttatgtggcgttcatt 655
||||||||||||||||||||
Sbjct: 29973941 tcttttatgtggcgttcatt 29973922
>dbj|AP003275.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0514H03
Length = 167230
Score = 214 bits (108), Expect = 3e-52
Identities = 135/144 (93%)
Strand = Plus / Minus
Query: 540 aggcattgcgtggtggagaagatattggttctggattccgaagagatctaaagcttatta 599
|||||||||||||||||||||||||||||||||| ||||||||||| || || || ||||
Sbjct: 52550 aggcattgcgtggtggagaagatattggttctgggttccgaagagacctgaaactcatta 52491
Query: 600 gtgaagtacaagcaccatttcgtggtgtccggaggttcttttatgtggcgttcattgcag 659
||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||
Sbjct: 52490 gtgaagtacaagcaccatttcgtggtgtccgaaggttcttttatgtggcgttaactgcag 52431
Query: 660 cggctggaatttcaacattcttta 683
| ||||||||||||||||||||||
Sbjct: 52430 cagctggaatttcaacattcttta 52407
Score = 143 bits (72), Expect = 9e-31
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 403 cagggaagaaagcaaaaaagctgcagattgcttgagaatagctttgcgagattacaatct 462
||||||||||||||| ||||||||||||||||| || | |||| |||||||||| |||||
Sbjct: 53211 cagggaagaaagcaacaaagctgcagattgcttaaggacagctctgcgagattataatct 53152
Query: 463 caaatttggcacagtacttaatgatccagacatggcgccattcagggcatcaccagaatt 522
||| ||||| || ||||||||||||| ||| |||| || |||||||||||||| |||||
Sbjct: 53151 caagtttggtactatacttaatgatcctgacttggcaccgttcagggcatcaccggaatt 53092
Query: 523 taaggaacttcaagaggagg 542
|||||||||||||| ||||
Sbjct: 53091 caaggaacttcaagaagagg 53072
Score = 97.6 bits (49), Expect = 5e-17
Identities = 88/101 (87%)
Strand = Plus / Minus
Query: 301 ggtgaaggacgcacttgaacaatttgacaaggccctagagctgaatccaaatcctaccga 360
||||||||| || |||||||||||||| || |||||||||||||||||||||||| ||
Sbjct: 53399 ggtgaaggatgctcttgaacaatttgagaatgccctagagctgaatccaaatcctgttga 53340
Query: 361 agcccaagcagcgttctataacaaggcatgctgccatgcat 401
|||||||||||| | || || || ||||||||||||||||
Sbjct: 53339 agcccaagcagcactatacaataaagcatgctgccatgcat 53299
Score = 95.6 bits (48), Expect = 2e-16
Identities = 87/100 (87%)
Strand = Plus / Minus
Query: 206 ccgtctccccctccttcgccggagaaggcggtcgaggcggctccgacggcggagtcgtgc 265
||||||||||| || ||||||| ||||| || | ||| | ||||||||||||||||||
Sbjct: 55117 ccgtctcccccgccatcgccggggaaggaggcggtggctgtcccgacggcggagtcgtgc 55058
Query: 266 gtcaacctcggcctcgagttcttctccaagggcagggtga 305
|||||||| || |||||| |||||||||||||||||||||
Sbjct: 55057 gtcaacctgggactcgagctcttctccaagggcagggtga 55018
>gb|DQ210445.1 | Maxillaria concavilabia 18S ribosomal RNA gene, partial sequence;
internal transcribed spacer 1, 5.8S ribosomal RNA gene,
and internal transcribed spacer 2, complete sequence;
and 26S ribosomal RNA gene, partial sequence
Length = 766
Score = 42.1 bits (21), Expect = 2.4
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 198 cgtcgcccccgtctccccctc 218
|||||||||||||||||||||
Sbjct: 136 cgtcgcccccgtctccccctc 156
>gb|DQ210307.1 | Maxillaria cerifera 18S ribosomal RNA gene, partial sequence;
internal transcribed spacer 1, 5.8S ribosomal RNA gene,
and internal transcribed spacer 2, complete sequence;
and 26S ribosomal RNA gene, partial sequence
Length = 773
Score = 42.1 bits (21), Expect = 2.4
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 198 cgtcgcccccgtctccccctc 218
|||||||||||||||||||||
Sbjct: 136 cgtcgcccccgtctccccctc 156
>gb|DQ210167.1 | Maxillaria notylioglossa 18S ribosomal RNA gene, partial sequence;
internal transcribed spacer 1, 5.8S ribosomal RNA gene,
and internal transcribed spacer 2, complete sequence;
and 26S ribosomal RNA gene, partial sequence
Length = 774
Score = 42.1 bits (21), Expect = 2.4
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 198 cgtcgcccccgtctccccctc 218
|||||||||||||||||||||
Sbjct: 136 cgtcgcccccgtctccccctc 156
>gb|DQ210117.1 | Maxillaria cerifera 18S ribosomal RNA gene, partial sequence;
internal transcribed spacer 1, 5.8S ribosomal RNA gene,
and internal transcribed spacer 2, complete sequence;
and 26S ribosomal RNA gene, partial sequence
Length = 776
Score = 42.1 bits (21), Expect = 2.4
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 198 cgtcgcccccgtctccccctc 218
|||||||||||||||||||||
Sbjct: 136 cgtcgcccccgtctccccctc 156
>gb|DQ210114.1 | Maxillaria notylioglossa 18S ribosomal RNA gene, partial sequence;
internal transcribed spacer 1, 5.8S ribosomal RNA gene,
and internal transcribed spacer 2, complete sequence;
and 26S ribosomal RNA gene, partial sequence
Length = 774
Score = 42.1 bits (21), Expect = 2.4
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 198 cgtcgcccccgtctccccctc 218
|||||||||||||||||||||
Sbjct: 136 cgtcgcccccgtctccccctc 156
>gb|DQ210045.1 | Maxillaria neglecta 18S ribosomal RNA gene, partial sequence;
internal transcribed spacer 1, 5.8S ribosomal RNA gene,
and internal transcribed spacer 2, complete sequence;
and 26S ribosomal RNA gene, partial sequence
Length = 766
Score = 42.1 bits (21), Expect = 2.4
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 198 cgtcgcccccgtctccccctc 218
|||||||||||||||||||||
Sbjct: 136 cgtcgcccccgtctccccctc 156
>emb|AL844878.4 |CNS08CB1 Oryza sativa chromosome 12, . BAC OSJNBb0036A19 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 128795
Score = 40.1 bits (20), Expect = 9.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 200 tcgcccccgtctccccctcc 219
||||||||||||||||||||
Sbjct: 87078 tcgcccccgtctccccctcc 87059
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,439,973
Number of Sequences: 3902068
Number of extensions: 5439973
Number of successful extensions: 107174
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106794
Number of HSP's gapped (non-prelim): 375
length of query: 683
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 660
effective length of database: 17,143,297,704
effective search space: 11314576484640
effective search space used: 11314576484640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)