Clone Information

BLAST Search Result

Clone Name	baal37e10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY106170.1\| Zea mays PCO135607 mRNA sequence	490	e-135
2	ref\|XM_477902.1\| Oryza sativa (japonica cultivar-group), mRNA	394	e-106
3	dbj\|AK064872.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	394	e-106
4	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	236	8e-59
5	dbj\|AP004668.3\| Oryza sativa (japonica cultivar-group) genomic D...	236	8e-59
6	ref\|NM_180508.1\| Arabidopsis thaliana intramolecular transferase...	60	1e-05
7	ref\|NM_121759.1\| Arabidopsis thaliana intramolecular transferase...	60	1e-05
8	gb\|AY129467.1\| Arabidopsis thaliana AT5g17530/K10A8_10 mRNA, com...	60	1e-05
9	gb\|AY061751.1\| Arabidopsis thaliana AT5g17530/K10A8_10 mRNA, com...	60	1e-05
10	gb\|BT012905.1\| Lycopersicon esculentum clone 114022F, mRNA sequence	44	0.59
11	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
12	dbj\|AP003019.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
13	gb\|AC152926.1\| Tribolium castaneum BAC T.cast_C1K1 (Clemson Uni...	40	9.3
14	ref\|XM_422780.1\| PREDICTED: Gallus gallus similar to zinc finger...	40	9.3
15	gb\|AC113438.17\| Mus musculus chromosome 6, clone RP23-191I2, com...	40	9.3
16	emb\|AL391495.16\| Human DNA sequence from clone RP11-324B6 on chr...	40	9.3
17	emb\|AL731624.3\|OSJN00266 Oryza sativa genomic DNA, chromosome 4,...	40	9.3
18	emb\|AL035076.1\|SPCC417 S.pombe chromosome III cosmid c417	40	9.3
19	emb\|CR858177.1\| Pongo pygmaeus mRNA; cDNA DKFZp469D148 (from clo...	40	9.3
20	emb\|CR792449.7\| Zebrafish DNA sequence from clone DKEYP-80F12 in...	40	9.3
21	emb\|AJ719968.1\| Gallus gallus partial mRNA for hypothetical prot...	40	9.3
22	emb\|BX530077.4\| Zebrafish DNA sequence from clone CH211-22D5 in ...	40	9.3
23	gb\|AC046143.20\| Homo sapiens 3 BAC RP11-534C12 (Roswell Park Can...	40	9.3
24	emb\|BX294385.17\| Zebrafish DNA sequence from clone CH211-197E8 i...	40	9.3
25	gb\|AC151535.2\| Mus musculus BAC clone RP23-213M8 from chromosome...	40	9.3
26	ref\|NM_001023273.1\| Schizosaccharomyces pombe 972h- hypothetical...	40	9.3
27	gb\|AF315727.1\|AF315727 Carassius auratus gibelio unknown mRNA	40	9.3
28	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.3
29	gb\|AC019055.6\| Homo sapiens BAC clone RP11-111P18 from 2, comple...	40	9.3
30	dbj\|AK130804.1\| Homo sapiens cDNA FLJ27294 fis, clone TMS03441	40	9.3
31	gb\|AC154126.2\| Mus musculus BAC clone RP23-471O11 from chromosom...	40	9.3

>gb|AY106170.1| Zea mays PCO135607 mRNA sequence
          Length = 2294

 Score =  490 bits (247), Expect = e-135
 Identities = 502/583 (86%), Gaps = 8/583 (1%)
 Strand = Plus / Plus

                                                                       
Query: 48  ccatggccgcattatcagcgaaggccatacaaaatgcgttcttggcacaagatggtccac 107
           ||||||| ||||||||||||||| ||||||||||||| |||||||||||| |     |||
Sbjct: 105 ccatggcagcattatcagcgaagaccatacaaaatgcattcttggcacaacaca---cac 161

                                                                       
Query: 108 ggactaggcacaacacaagatatacctgtgatttttgtacccgcaatacccgcagcatgc 167
           ||| ||||||     |||||||| || ||||||||||| | | |||||||||||||||||
Sbjct: 162 ggaataggcatggtgcaagatatcccagtgatttttgttctctcaatacccgcagcatgc 221

                                                                       
Query: 168 attccgtccaggggtgtagattatcattagctgatacttcagccaagtggttaaatacca 227
           ||||| ||||||  ||||||||  || | |||||| |||||||||| |||||||||||||
Sbjct: 222 attccttccaggaatgtagattggcagtggctgattcttcagccaaatggttaaatacca 281

                                                                       
Query: 228 catcaacagcatggattagcttcgggaaacaagcaaatattagctgcaatgctactcaag 287
           |||| ||   ||||| |||||||   |||||||||   ||||||||||||||| ||||||
Sbjct: 282 catcgacgctatggactagcttcaacaaacaagcaggcattagctgcaatgctgctcaag 341

                                                                       
Query: 288 gtgccagtgatgtcttgtccat-tggtaaagttgattttctcaagctccaaaatggcagt 346
           ||| || || ||| | || ||| ||  |||||||| ||||| ||||| ||||||||||||
Sbjct: 342 gtggcactgttgtgt-gttcatctgagaaagttgagtttctgaagcttcaaaatggcagt 400

                                                                       
Query: 347 gatattcgtggtgttgctattgctggggttgaaggtgagcctgtcaatctcacggagctt 406
           |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||   |
Sbjct: 401 gatattcgtggtgttgctgttgctggggttgaaggtgagcctgtcaacctcacggaagat 460

                                                                       
Query: 407 gtcgctgaagctatagctgctgcatttgctgcatggttattaaacaagaagaaagcggat 466
           ||| || ||||||||||||| || |||||||||||| | |||||||||||   | | |||
Sbjct: 461 gtcactaaagctatagctgcagcttttgctgcatggctgttaaacaagaa---accagat 517

                                                                       
Query: 467 ggcttgagacgtttaagaatctctgttggacatgattcacgaatttctgctcataaattg 526
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 518 ggcttgagacgtttaagaatctctgttggacatgattcacgaatttctgcacataaattg 577

                                                                       
Query: 527 cagaatgcagttactcatggaatcactgctgtcggacatgatgttctacagtttggattg 586
           ||||||||||| ||||||||||||||| |||  ||||| ||| | |||||||||||||||
Sbjct: 578 cagaatgcagtcactcatggaatcactactgctggacacgatatcctacagtttggattg 637

                                                      
Query: 587 gcttcaacaccggcaatgttcaacagcacacttaccgaagatg 629
           |||||||| || |||||||||||||| |||||||| |||||||
Sbjct: 638 gcttcaacgcctgcaatgttcaacagtacacttacagaagatg 680

to top

>ref|XM_477902.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2011

 Score =  394 bits (199), Expect = e-106
 Identities = 319/359 (88%)
 Strand = Plus / Plus

                                                                       
Query: 314 aaagttgattttctcaagctccaaaatggcagtgatattcgtggtgttgctattgctggg 373
           |||||||| ||| | |||||||| ||||||||||||||||||||||||||| ||| ||||
Sbjct: 151 aaagttgactttttaaagctccagaatggcagtgatattcgtggtgttgctgttggtggg 210

                                                                       
Query: 374 gttgaaggtgagcctgtcaatctcacggagcttgtcgctgaagctatagctgctgcattt 433
           || ||||| ||||| || |||||||| |||| |||  ||||||| |||||| ||||||||
Sbjct: 211 gtcgaaggcgagcccgtaaatctcactgagcctgttactgaagcaatagcttctgcattt 270

                                                                       
Query: 434 gctgcatggttattaaacaagaagaaagcggatggcttgagacgtttaagaatctctgtt 493
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 271 gctgcatggttattaaacaagaagaaagcggatggatggagacgtttaagaatttctgtt 330

                                                                       
Query: 494 ggacatgattcacgaatttctgctcataaattgcagaatgcagttactcatggaatcact 553
           ||||||||||| ||||||||||| |||||||||||| |||||||||||| |||||| || 
Sbjct: 331 ggacatgattctcgaatttctgcacataaattgcaggatgcagttactcttggaattacc 390

                                                                       
Query: 554 gctgtcggacatgatgttctacagtttggattggcttcaacaccggcaatgttcaacagc 613
            |||  || ||||||||| |||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 391 actgcagggcatgatgttttacaatttggattggcttcaacaccagcaatgttcaacagt 450

                                                                      
Query: 614 acacttaccgaagatgcgatacatcattgcccagcagatggaggcatcatgataacagc 672
           |||||||| ||||||| |||| ||||||||||||  ||||||| ||| |||||||||||
Sbjct: 451 acacttacagaagatgagataaatcattgcccagttgatggagccataatgataacagc 509

to top

>dbj|AK064872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000J06, full
           insert sequence
          Length = 2011

 Score =  394 bits (199), Expect = e-106
 Identities = 319/359 (88%)
 Strand = Plus / Plus

                                                                       
Query: 314 aaagttgattttctcaagctccaaaatggcagtgatattcgtggtgttgctattgctggg 373
           |||||||| ||| | |||||||| ||||||||||||||||||||||||||| ||| ||||
Sbjct: 151 aaagttgactttttaaagctccagaatggcagtgatattcgtggtgttgctgttggtggg 210

                                                                       
Query: 374 gttgaaggtgagcctgtcaatctcacggagcttgtcgctgaagctatagctgctgcattt 433
           || ||||| ||||| || |||||||| |||| |||  ||||||| |||||| ||||||||
Sbjct: 211 gtcgaaggcgagcccgtaaatctcactgagcctgttactgaagcaatagcttctgcattt 270

                                                                       
Query: 434 gctgcatggttattaaacaagaagaaagcggatggcttgagacgtttaagaatctctgtt 493
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 271 gctgcatggttattaaacaagaagaaagcggatggatggagacgtttaagaatttctgtt 330

                                                                       
Query: 494 ggacatgattcacgaatttctgctcataaattgcagaatgcagttactcatggaatcact 553
           ||||||||||| ||||||||||| |||||||||||| |||||||||||| |||||| || 
Sbjct: 331 ggacatgattctcgaatttctgcacataaattgcaggatgcagttactcttggaattacc 390

                                                                       
Query: 554 gctgtcggacatgatgttctacagtttggattggcttcaacaccggcaatgttcaacagc 613
            |||  || ||||||||| |||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 391 actgcagggcatgatgttttacaatttggattggcttcaacaccagcaatgttcaacagt 450

                                                                      
Query: 614 acacttaccgaagatgcgatacatcattgcccagcagatggaggcatcatgataacagc 672
           |||||||| ||||||| |||| ||||||||||||  ||||||| ||| |||||||||||
Sbjct: 451 acacttacagaagatgagataaatcattgcccagttgatggagccataatgataacagc 509

to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  236 bits (119), Expect = 8e-59
 Identities = 170/187 (90%)
 Strand = Plus / Plus

                                                                            
Query: 343      cagtgatattcgtggtgttgctattgctggggttgaaggtgagcctgtcaatctcacgga 402
                |||||||||||||||||||||| ||| |||||| ||||| ||||| || |||||||| ||
Sbjct: 15288511 cagtgatattcgtggtgttgctgttggtggggtcgaaggcgagcccgtaaatctcactga 15288570

                                                                            
Query: 403      gcttgtcgctgaagctatagctgctgcatttgctgcatggttattaaacaagaagaaagc 462
                || |||  ||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 15288571 gcctgttactgaagcaatagcttctgcatttgctgcatggttattaaacaagaagaaagc 15288630

                                                                            
Query: 463      ggatggcttgagacgtttaagaatctctgttggacatgattcacgaatttctgctcataa 522
                |||||| | ||||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct: 15288631 ggatggatggagacgtttaagaatttctgttggacatgattctcgaatttctgcacataa 15288690

                       
Query: 523      attgcag 529
                |||||||
Sbjct: 15288691 attgcag 15288697



 Score =  165 bits (83), Expect = 2e-37
 Identities = 188/223 (84%)
 Strand = Plus / Plus

                                                                            
Query: 56       gcattatcagcgaaggccatacaaaatgcgttcttggcacaagatggtccacggactagg 115
                |||||||||| ||||  ||| |||||||| |||||||||||| || | |||| | |||| 
Sbjct: 15286748 gcattatcagggaagatcattcaaaatgcattcttggcacaacatcgcccacaggctaga 15286807

                                                                            
Query: 116      cacaacacaagatatacctgtgatttttgtacccgcaatacccgcagcatgcattccgtc 175
                |||| |||||||||| || |||| |||||| ||| | ||||||||||| |||||||  ||
Sbjct: 15286808 cacagcacaagatatcccagtgacttttgtgccctcgatacccgcagcgtgcattctttc 15286867

                                                                            
Query: 176      caggggtgtagattatcattagctgatacttcagccaagtggttaaataccacatcaaca 235
                ||||  |||||| ||  | | |||| |||||||||||||||||||||||| | |||||||
Sbjct: 15286868 caggaatgtagactaagactggctggtacttcagccaagtggttaaatacaatatcaaca 15286927

                                                           
Query: 236      gcatggattagcttcgggaaacaagcaaatattagctgcaatg 278
                ||||||||||||| | | ||||||||| |||||||||||||||
Sbjct: 15286928 gcatggattagctccagcaaacaagcatatattagctgcaatg 15286970



 Score =  107 bits (54), Expect = 5e-20
 Identities = 81/90 (90%)
 Strand = Plus / Plus

                                                                            
Query: 582      gattggcttcaacaccggcaatgttcaacagcacacttaccgaagatgcgatacatcatt 641
                |||||||||||||||| |||||||||||||| |||||||| ||||||| |||| ||||||
Sbjct: 15290117 gattggcttcaacaccagcaatgttcaacagtacacttacagaagatgagataaatcatt 15290176

                                              
Query: 642      gcccagcagatggaggcatcatgataacag 671
                ||||||  ||||||| ||| ||||||||||
Sbjct: 15290177 gcccagttgatggagccataatgataacag 15290206

to top

>dbj|AP004668.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0475E07
          Length = 139961

 Score =  236 bits (119), Expect = 8e-59
 Identities = 170/187 (90%)
 Strand = Plus / Plus

                                                                         
Query: 343   cagtgatattcgtggtgttgctattgctggggttgaaggtgagcctgtcaatctcacgga 402
             |||||||||||||||||||||| ||| |||||| ||||| ||||| || |||||||| ||
Sbjct: 74524 cagtgatattcgtggtgttgctgttggtggggtcgaaggcgagcccgtaaatctcactga 74583

                                                                         
Query: 403   gcttgtcgctgaagctatagctgctgcatttgctgcatggttattaaacaagaagaaagc 462
             || |||  ||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 74584 gcctgttactgaagcaatagcttctgcatttgctgcatggttattaaacaagaagaaagc 74643

                                                                         
Query: 463   ggatggcttgagacgtttaagaatctctgttggacatgattcacgaatttctgctcataa 522
             |||||| | ||||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct: 74644 ggatggatggagacgtttaagaatttctgttggacatgattctcgaatttctgcacataa 74703

                    
Query: 523   attgcag 529
             |||||||
Sbjct: 74704 attgcag 74710



 Score =  165 bits (83), Expect = 2e-37
 Identities = 188/223 (84%)
 Strand = Plus / Plus

                                                                         
Query: 56    gcattatcagcgaaggccatacaaaatgcgttcttggcacaagatggtccacggactagg 115
             |||||||||| ||||  ||| |||||||| |||||||||||| || | |||| | |||| 
Sbjct: 72761 gcattatcagggaagatcattcaaaatgcattcttggcacaacatcgcccacaggctaga 72820

                                                                         
Query: 116   cacaacacaagatatacctgtgatttttgtacccgcaatacccgcagcatgcattccgtc 175
             |||| |||||||||| || |||| |||||| ||| | ||||||||||| |||||||  ||
Sbjct: 72821 cacagcacaagatatcccagtgacttttgtgccctcgatacccgcagcgtgcattctttc 72880

                                                                         
Query: 176   caggggtgtagattatcattagctgatacttcagccaagtggttaaataccacatcaaca 235
             ||||  |||||| ||  | | |||| |||||||||||||||||||||||| | |||||||
Sbjct: 72881 caggaatgtagactaagactggctggtacttcagccaagtggttaaatacaatatcaaca 72940

                                                        
Query: 236   gcatggattagcttcgggaaacaagcaaatattagctgcaatg 278
             ||||||||||||| | | ||||||||| |||||||||||||||
Sbjct: 72941 gcatggattagctccagcaaacaagcatatattagctgcaatg 72983



 Score =  107 bits (54), Expect = 5e-20
 Identities = 81/90 (90%)
 Strand = Plus / Plus

                                                                         
Query: 582   gattggcttcaacaccggcaatgttcaacagcacacttaccgaagatgcgatacatcatt 641
             |||||||||||||||| |||||||||||||| |||||||| ||||||| |||| ||||||
Sbjct: 76130 gattggcttcaacaccagcaatgttcaacagtacacttacagaagatgagataaatcatt 76189

                                           
Query: 642   gcccagcagatggaggcatcatgataacag 671
             ||||||  ||||||| ||| ||||||||||
Sbjct: 76190 gcccagttgatggagccataatgataacag 76219

to top

>ref|NM_180508.1| Arabidopsis thaliana intramolecular transferase,
           phosphotransferases AT5G17530 transcript variant
           AT5G17530.2 mRNA, complete cds
          Length = 2209

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 319 tgattttctcaagctccaaaatggcagtgatattcgtggtgt 360
           ||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 437 tgattttctgaagctccaaaacggcagtgatattcggggtgt 478



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 566 gatgttctacagtttggattggcttcaacaccggcaatgttcaacagcacacttaccgaa 625
           |||||| | ||||||||||| || |||||||| |||||||| || |||||| | || |||
Sbjct: 681 gatgttgttcagtttggattagcatcaacaccagcaatgtttaatagcacattgactgaa 740

               
Query: 626 gatg 629
           ||||
Sbjct: 741 gatg 744

to top

>ref|NM_121759.1| Arabidopsis thaliana intramolecular transferase,
           phosphotransferases AT5G17530 transcript variant
           AT5G17530.1 mRNA, complete cds
          Length = 2207

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 319 tgattttctcaagctccaaaatggcagtgatattcgtggtgt 360
           ||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 437 tgattttctgaagctccaaaacggcagtgatattcggggtgt 478



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 566 gatgttctacagtttggattggcttcaacaccggcaatgttcaacagcacacttaccgaa 625
           |||||| | ||||||||||| || |||||||| |||||||| || |||||| | || |||
Sbjct: 681 gatgttgttcagtttggattagcatcaacaccagcaatgtttaatagcacattgactgaa 740

               
Query: 626 gatg 629
           ||||
Sbjct: 741 gatg 744

to top

>gb|AY129467.1| Arabidopsis thaliana AT5g17530/K10A8_10 mRNA, complete cds
          Length = 1746

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 319 tgattttctcaagctccaaaatggcagtgatattcgtggtgt 360
           ||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 165 tgattttctgaagctccaaaacggcagtgatattcggggtgt 206



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 566 gatgttctacagtttggattggcttcaacaccggcaatgttcaacagcacacttaccgaa 625
           |||||| | ||||||||||| || |||||||| |||||||| || |||||| | || |||
Sbjct: 409 gatgttgttcagtttggattagcatcaacaccagcaatgtttaatagcacattgactgaa 468

               
Query: 626 gatg 629
           ||||
Sbjct: 469 gatg 472

to top

>gb|AY061751.1| Arabidopsis thaliana AT5g17530/K10A8_10 mRNA, complete cds
          Length = 2207

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 319 tgattttctcaagctccaaaatggcagtgatattcgtggtgt 360
           ||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 437 tgattttctgaagctccaaaacggcagtgatattcggggtgt 478



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 566 gatgttctacagtttggattggcttcaacaccggcaatgttcaacagcacacttaccgaa 625
           |||||| | ||||||||||| || |||||||| |||||||| || |||||| | || |||
Sbjct: 681 gatgttgttcagtttggattagcatcaacaccagcaatgtttaatagcacattgactgaa 740

               
Query: 626 gatg 629
           ||||
Sbjct: 741 gatg 744

to top

>gb|BT012905.1| Lycopersicon esculentum clone 114022F, mRNA sequence
          Length = 2090

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 477 gtttaagaatctctgttggacatgattcacgaatttctgctcataaattgcagaatgcag 536
           |||||||| |||| || || ||||| |||||||||||||| || || || ||| ||||||
Sbjct: 477 gtttaagagtctccgtcggtcatgactcacgaatttctgcacagaagttacaggatgcag 536

             
Query: 537 tt 538
           ||
Sbjct: 537 tt 538

to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 594     caccggcaatgttcaacagca 614
               |||||||||||||||||||||
Sbjct: 3928295 caccggcaatgttcaacagca 3928315

to top

>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0035I03
          Length = 153749

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 594   caccggcaatgttcaacagca 614
             |||||||||||||||||||||
Sbjct: 34171 caccggcaatgttcaacagca 34191

to top

>gb|AC152926.1| Tribolium castaneum  BAC T.cast_C1K1 (Clemson University Genomics
             Institute Tribolium castaneum BAC Library (Red Flour
             Beetle)) complete sequence
          Length = 130658

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 508   aatttctgctcataaattgc 527
             ||||||||||||||||||||
Sbjct: 54542 aatttctgctcataaattgc 54523

to top

>ref|XM_422780.1| PREDICTED: Gallus gallus similar to zinc finger protein ANC_2H01;
           Kruppel-like (LOC424972), mRNA
          Length = 1130

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 422 gctgctgcatttgctgcatg 441
           ||||||||||||||||||||
Sbjct: 215 gctgctgcatttgctgcatg 234

to top

>gb|AC113438.17| Mus musculus chromosome 6, clone RP23-191I2, complete sequence
          Length = 221969

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 343   cagtgatattcgtggtgttgctattgctgggg 374
             ||||||| |||||||||||||| || ||||||
Sbjct: 80726 cagtgatcttcgtggtgttgctttttctgggg 80757

to top

>emb|AL391495.16| Human DNA sequence from clone RP11-324B6 on chromosome Xq13.2-21.1
            Contains a tetratricopeptide repeat domain 3 (TTC3)
            pseudogene and the gene for hepatocellular
            carcinoma-associated protein (HCA3), complete sequence
          Length = 142952

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 649  agatggaggcatcatgataa 668
            ||||||||||||||||||||
Sbjct: 7636 agatggaggcatcatgataa 7617

to top

>emb|AL731624.3|OSJN00266 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091C07,
             complete sequence
          Length = 138383

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 486   tctctgttggacatgattca 505
             ||||||||||||||||||||
Sbjct: 26412 tctctgttggacatgattca 26431

to top

>emb|AL035076.1|SPCC417 S.pombe chromosome III cosmid c417
          Length = 40383

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 450   acaagaagaaagcggatggc 469
             ||||||||||||||||||||
Sbjct: 10800 acaagaagaaagcggatggc 10781

to top

>emb|CR858177.1| Pongo pygmaeus mRNA; cDNA DKFZp469D148 (from clone DKFZp469D148)
          Length = 6718

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 448  aaacaagaagaaagcggatg 467
            ||||||||||||||||||||
Sbjct: 4833 aaacaagaagaaagcggatg 4852

to top

>emb|CR792449.7| Zebrafish DNA sequence from clone DKEYP-80F12 in linkage group 13,
             complete sequence
          Length = 106699

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   caagctccaaaatggcagtg 347
             ||||||||||||||||||||
Sbjct: 72457 caagctccaaaatggcagtg 72476

to top

>emb|AJ719968.1| Gallus gallus partial mRNA for hypothetical protein, clone 8o1
          Length = 1658

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 422 gctgctgcatttgctgcatg 441
           ||||||||||||||||||||
Sbjct: 101 gctgctgcatttgctgcatg 120

to top

>emb|BX530077.4| Zebrafish DNA sequence from clone CH211-22D5 in linkage group 21,
              complete sequence
          Length = 200625

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 412    tgaagctatagctgctgcat 431
              ||||||||||||||||||||
Sbjct: 121351 tgaagctatagctgctgcat 121332

to top

>gb|AC046143.20| Homo sapiens 3 BAC RP11-534C12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 180365

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 448    aaacaagaagaaagcggatg 467
              ||||||||||||||||||||
Sbjct: 134406 aaacaagaagaaagcggatg 134387

to top

>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 519   ataaattgcagaatgcagtt 538
             ||||||||||||||||||||
Sbjct: 73062 ataaattgcagaatgcagtt 73081

to top

>gb|AC151535.2| Mus musculus BAC clone RP23-213M8 from chromosome 7, complete sequence
          Length = 216527

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 633    tacatcattgcccagcagat 652
              ||||||||||||||||||||
Sbjct: 191314 tacatcattgcccagcagat 191295

to top

>ref|NM_001023273.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPCC417.06c),
           partial mRNA
          Length = 1875

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 450 acaagaagaaagcggatggc 469
           ||||||||||||||||||||
Sbjct: 271 acaagaagaaagcggatggc 290

to top

>gb|AF315727.1|AF315727 Carassius auratus gibelio unknown mRNA
          Length = 559

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 321 attttctcaagctccaaaat 340
           ||||||||||||||||||||
Sbjct: 517 attttctcaagctccaaaat 498

to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 486      tctctgttggacatgattca 505
                ||||||||||||||||||||
Sbjct: 16775981 tctctgttggacatgattca 16776000

to top

>gb|AC019055.6| Homo sapiens BAC clone RP11-111P18 from 2, complete sequence
          Length = 176383

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 541   tcatggaatcactgctgtcg 560
             ||||||||||||||||||||
Sbjct: 53621 tcatggaatcactgctgtcg 53602

to top

>dbj|AK130804.1| Homo sapiens cDNA FLJ27294 fis, clone TMS03441
          Length = 1707

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 448  aaacaagaagaaagcggatg 467
            ||||||||||||||||||||
Sbjct: 1405 aaacaagaagaaagcggatg 1424

to top

>gb|AC154126.2| Mus musculus BAC clone RP23-471O11 from chromosome 7, complete sequence
          Length = 198860

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 633   tacatcattgcccagcagat 652
             ||||||||||||||||||||
Sbjct: 64714 tacatcattgcccagcagat 64695


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,572,719
Number of Sequences: 3902068
Number of extensions: 5572719
Number of successful extensions: 141532
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141389
Number of HSP's gapped (non-prelim): 142
length of query: 677
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 654
effective length of database: 17,143,297,704
effective search space: 11211716698416
effective search space used: 11211716698416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result