>PR1_SAMNI (Q41359) Pathogenesis-related protein PR-1 type precursor|
          Length = 167

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +3

Query: 267 MCGHWSSEYWRGSNRGGCNKIWC*NGR---LCFWSPGASSEAGRR 392
           +CGH++   WR S R GC ++ C NG     C +SP   + AG+R
Sbjct: 122 VCGHYTQVVWRNSVRIGCARVRCNNGAWFITCNYSP-PGNYAGQR 165

>PR1C_TOBAC (P09042) Pathogenesis-related protein 1C precursor (PR-1C)|
          Length = 168

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 267 MCGHWSSEYWRGSNRGGCNKIWC*NG 344
           +CGH++   WR S R GC ++ C NG
Sbjct: 123 VCGHYTQVVWRNSVRVGCARVQCNNG 148

>PR1A_TOBAC (P08299) Pathogenesis-related protein 1A precursor (PR-1A)|
          Length = 168

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 267 MCGHWSSEYWRGSNRGGCNKIWC*NG 344
           +CGH++   WR S R GC ++ C NG
Sbjct: 123 VCGHYTQVVWRNSVRVGCARVQCNNG 148

>PR04_LYCES (Q04108) Pathogenesis-related leaf protein 4 precursor (P4)|
          Length = 159

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 267 MCGHWSSEYWRGSNRGGCNKIWC*NG 344
           MCGH++   WR S R GC +  C NG
Sbjct: 114 MCGHYTQVVWRNSVRLGCGRARCNNG 139

>PR1B_TOBAC (P07053) Pathogenesis-related protein 1B precursor (PR-1B)|
          Length = 168

 Score = 33.5 bits (75), Expect = 0.64
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 267 MCGHWSSEYWRGSNRGGCNKIWC*NG 344
           +CGH++   WR S R GC ++ C NG
Sbjct: 123 VCGHYTQVVWRNSVRVGCARVKCNNG 148

>PR1_ARATH (P33154) Pathogenesis-related protein 1 precursor (PR-1)|
          Length = 161

 Score = 33.5 bits (75), Expect = 0.64
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 267 MCGHWSSEYWRGSNRGGCNKIWC*NG 344
           +CGH++   WR S R GC K+ C NG
Sbjct: 116 VCGHYTQVVWRKSVRLGCAKVRCNNG 141

>BRCA2_RAT (O35923) Breast cancer type 2 susceptibility protein homolog (Fanconi|
            anemia group D1 protein homolog)
          Length = 3343

 Score = 33.5 bits (75), Expect = 0.64
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -2

Query: 433  LAEKNQVLEVKGNFLLPASEEAPGDQKQSLPFQHHILLQP----PLFEPLQYSEDQ*PHI 266
            L E ++++E KG  L P+     G  K    F HH+ L+P    P     +  E Q PH+
Sbjct: 2253 LNEFDRIIESKGKSLTPSKSTPDGTIKDRRLFTHHMSLEPVTCGPFCSSKERQETQSPHV 2312

>RS15_HALMA (P05762) 30S ribosomal protein S15P/S13e (HmaS15) (HS11)|
          Length = 155

 Score = 33.1 bits (74), Expect = 0.83
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +1

Query: 310 EEAVTKYGVEMEDFVSGPRELLLKLVEENYPLPPKPDSFQQGEEKVTEIQRKRHSAPDV 486
           E+A+    VE+ +    P E+ LKL +E     P PD      +KVTEI  +  + PD+
Sbjct: 29  EDAIEARVVELAEQGHSPSEIGLKLRDEGVQGTPIPDVSLATGKKVTEILEENEAEPDL 87

>JAD1D_HUMAN (Q9BY66) Jumonji/ARID domain-containing protein 1D (SmcY protein)|
           (Histocompatibility Y antigen) (H-Y)
          Length = 1539

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 607 HMCQICNSEEEKSLLLNCSGCSLRVHPSCL 696
           ++CQ+C+  +E   LL C GC    H  CL
Sbjct: 315 YICQVCSRGDEDDKLLFCDGCDDNYHIFCL 344

>PR1_HORVU (Q05968) Pathogenesis-related protein 1 precursor|
          Length = 164

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 267 MCGHWSSEYWRGSNRGGCNKIWC*NGRLCF 356
           +CGH++   WR S   GC ++ C N R  F
Sbjct: 118 VCGHYTQVVWRASTSIGCARVVCNNNRGVF 147

>PR13_HORVU (P35793) Pathogenesis-related protein PRB1-3 precursor (PR-1B)|
           (HV-8)
          Length = 164

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 267 MCGHWSSEYWRGSNRGGCNKIWC*NGRLCF 356
           +CGH++   WR S   GC ++ C N R  F
Sbjct: 118 VCGHYTQVVWRASTSIGCARVVCNNNRGVF 147

>PR12_HORVU (P35792) Pathogenesis-related protein PRB1-2 precursor|
          Length = 164

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 267 MCGHWSSEYWRGSNRGGCNKIWC*NGRLCF 356
           +CGH++   WR S   GC ++ C N R  F
Sbjct: 118 VCGHYTQVVWRASTSIGCARVVCNNNRGVF 147

>JAD1D_PANTR (Q5XUN4) Jumonji/ARID domain-containing protein 1D (SmcY protein)|
          Length = 1535

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 607 HMCQICNSEEEKSLLLNCSGCSLRVHPSCL 696
           ++CQ+C+  +E   LL C GC    H  CL
Sbjct: 315 YICQVCSRGDEDDKLLFCDGCDDNYHIFCL 344

>BRCA2_MOUSE (P97929) Breast cancer type 2 susceptibility protein homolog (Fanconi|
            anemia group D1 protein homolog)
          Length = 3329

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -2

Query: 433  LAEKNQVLEVKGNFLLPASEEAPGDQKQSLPFQHHILLQPPLFEPLQYSED----Q*PHI 266
            L E ++++E KG  L P+     G  K    F HH+ L+P    P   S++    Q PH+
Sbjct: 2238 LNEFDRIIESKGKSLTPSKSTPDGTVKDRSLFTHHMSLEPVTCGPFCSSKERQGAQRPHL 2297

>BAZ2B_HUMAN (Q9UIF8) Bromodomain adjacent to zinc finger domain 2B (hWALp4)|
          Length = 1972

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 613  CQICNSEEEKSLLLNCSGCSLRVHPSC 693
            CQIC   + + LLL C GC    H  C
Sbjct: 1738 CQICRKGDNEELLLLCDGCDKGCHTYC 1764

>BAZ2B_CHICK (Q9DE13) Bromodomain adjacent to zinc finger domain 2B (Extracellular|
            matrix protein F22)
          Length = 2130

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 613  CQICNSEEEKSLLLNCSGCSLRVHPSC 693
            CQIC   + + LLL C GC    H  C
Sbjct: 1898 CQICRKGDNEELLLLCDGCDKGCHTYC 1924

>PHF14_HUMAN (O94880) PHD finger protein 14|
          Length = 888

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 607 HMCQICNSEEEKSLLLNCSGCSLRVHPSCL 696
           + C IC    ++ LLL C  C L  H  CL
Sbjct: 726 YSCGICKKNHDQHLLLLCDTCKLHYHLGCL 755

>PHF14_MOUSE (Q9D4H9) PHD finger protein 14|
          Length = 881

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 607 HMCQICNSEEEKSLLLNCSGCSLRVHPSCL 696
           + C IC    ++ LLL C  C L  H  CL
Sbjct: 719 YSCGICKKNHDQHLLLLCDTCKLHYHLGCL 748

>GCC1_HUMAN (Q96CN9) GRIP and coiled-coil domain-containing protein 1 (Golgi|
           coiled coil protein 1)
          Length = 775

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 34/154 (22%), Positives = 64/154 (41%)
 Frame = +1

Query: 4   RHEADFDTVEAPLEERMMNMYGKAAEFWAELRLELLSAGEISGEEKGISNQIWRLYWASH 183
           R EA +   +  +++ + +   KA E  A L       GE+ G ++ I+    RL    H
Sbjct: 181 RMEASYLADKKKMKQDLEDASNKAEEERARLE------GELKGLQEQIAETKARLITQQH 234

Query: 184 QRFFRHMCMSAKVPAVVKLAKEALAENKCVVIGLQSTGEARTEEAVTKYGVEMEDFVSGP 363
            R       +  +  + KL +E   + + + + L+ T EA    A      +ME F    
Sbjct: 235 DRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALAGRAYA--AEQMEGFELQT 292

Query: 364 RELLLKLVEENYPLPPKPDSFQQGEEKVTEIQRK 465
           ++L  ++ E    L    D   Q + ++ E+Q +
Sbjct: 293 KQLTREVEELKSELQAIRDEKNQPDPRLQELQEE 326

>YGGP_ECOLI (P52048) Hypothetical protein yggP|
          Length = 425

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +1

Query: 139 KGISNQIWRLYWASHQRFFRHMCMSAKVPAVVKLAKEALAENKCV 273
           KG+S+ +  L   +    F  + + A VPAVV++A E LAE+ C+
Sbjct: 240 KGMSDPVQMLRALTGDAGFDDIFVYAAVPAVVEMADELLAEDGCL 284

>RS15_HALSA (Q9HRA2) 30S ribosomal protein S15P/S13e|
          Length = 155

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +1

Query: 310 EEAVTKYGVEMEDFVSGPRELLLKLVEENYPLPPKPDSFQQGEEKVTEIQRKRHSAPDV- 486
           E+A+ +  VE+ +    P ++ LKL +E     P PD      +KVTEI     + P++ 
Sbjct: 30  EDAIEERVVELAEQGHDPSQIGLKLRDEGVQGTPVPDVKLATGKKVTEILEAHDAEPELP 89

Query: 487 -SFKGRVRKVAKM 522
             F+  + K  ++
Sbjct: 90  EDFRNLLEKAVRL 102

>JAD1D_MOUSE (Q62240) Jumonji/ARID domain-containing protein 1D (SmcY protein)|
           (Histocompatibility Y antigen) (H-Y)
          Length = 1548

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 607 HMCQICNSEEEKSLLLNCSGCSLRVHPSCL 696
           ++C+IC+  +E    L C GCS   H  CL
Sbjct: 324 YVCRICSRGDEVDKFLLCDGCSDNYHIFCL 353

>UBCX_PICAN (O60015) Ubiquitin-conjugating enzyme E2-21 kDa (EC 6.3.2.19)|
           (Ubiquitin-protein ligase) (Ubiquitin carrier protein)
           (Peroxin-4)
          Length = 188

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 11/48 (22%)
 Frame = +1

Query: 385 VEENYPL-PPKPDSFQQGEEKVTEIQRKRHSA----------PDVSFK 495
           +  NYPL PPK      GEEK+ ++QRK  S           P+V+FK
Sbjct: 67  IPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFK 114

>PR1A_LYCES (Q08697) Pathogenesis-related protein 1A1 precursor (PR-1A1)|
          Length = 175

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 267 MCGHWSSEYWRGSNRGGCNKIWC*NG 344
           +CGH++   WR S R GC ++ C +G
Sbjct: 113 VCGHYTQVVWRKSVRLGCARVRCNSG 138

>CRVP_TRIMU (P79845) Cysteine-rich venom protein precursor (TM-CRVP)|
          Length = 240

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +3

Query: 273 GHWSSEYWRGSNRGGCNKIWC*NGR-----LCFWSPGASSEAGRRKLPFTS 410
           GH++   W  S RGGC   +C + +     +C + P A +  G+   P+TS
Sbjct: 133 GHYTQIVWYKSYRGGCAAAYCPSSKYRYFYVCQYCP-AGNMIGKTATPYTS 182

>JHD3A_PONPY (Q5RD88) JmjC domain-containing histone demethylation protein 3A|
           (EC 1.14.11.-) (Jumonji domain-containing protein 2A)
          Length = 1064

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 631 EEEKSLLLNCSGCSLRVHPSC 693
           E+  S+L++C  CS+RVH SC
Sbjct: 729 EDGTSILVSCKKCSVRVHASC 749

>JHD3A_MOUSE (Q8BW72) JmjC domain-containing histone demethylation protein 3A|
           (EC 1.14.11.-) (Jumonji domain-containing protein 2A)
          Length = 1064

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 631 EEEKSLLLNCSGCSLRVHPSC 693
           E+  S+L++C  CS+RVH SC
Sbjct: 729 EDGTSMLVSCKKCSVRVHASC 749

>JHD3A_HUMAN (O75164) JmjC domain-containing histone demethylation protein 3A|
           (EC 1.14.11.-) (Jumonji domain-containing protein 2A)
          Length = 1064

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 631 EEEKSLLLNCSGCSLRVHPSC 693
           E+  S+L++C  CS+RVH SC
Sbjct: 729 EDGTSILVSCKKCSVRVHASC 749

>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
            (ALL1-related protein)
          Length = 5262

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 610  MCQICNSEEEKSLLLNCSGCSLRVHPSCL 696
            +C++C    + S LL C  C +  H  CL
Sbjct: 1154 VCEVCGQASDPSRLLLCDDCDISYHTYCL 1182

>LID2_SCHPO (Q9HDV4) Lid2 complex component lid2 (Lid2C component lid2)|
          Length = 1513

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 613 CQICNSEEEKSLLLNCSGCSLRVHPSCL 696
           C+ C  ++    +L C GC    H SCL
Sbjct: 271 CEYCGLDKNPETILLCDGCEAAYHTSCL 298

>ENGD_SHIFL (P0ABU4) GTP-dependent nucleic acid-binding protein engD|
          Length = 362

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = +1

Query: 265 KCVVIGLQSTGEARTEEAVTKYGVEMEDFVSGPRELLLKLVEENYPLPPKPDSFQQGEEK 444
           KC ++GL + G++    A+TK G+E  +F           +E N  + P PD      ++
Sbjct: 3   KCGIVGLPNVGKSTLFNALTKAGIEAANFP-------FCTIEPNTGVVPMPD---PRLDQ 52

Query: 445 VTEIQRKRHSAPD----VSFKGRVRKVAK 519
           + EI + + + P     V   G V+  +K
Sbjct: 53  LAEIVKPQRTLPTTMEFVDIAGLVKGASK 81

>ENGD_ECOLI (P0ABU2) GTP-dependent nucleic acid-binding protein engD|
          Length = 362

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = +1

Query: 265 KCVVIGLQSTGEARTEEAVTKYGVEMEDFVSGPRELLLKLVEENYPLPPKPDSFQQGEEK 444
           KC ++GL + G++    A+TK G+E  +F           +E N  + P PD      ++
Sbjct: 3   KCGIVGLPNVGKSTLFNALTKAGIEAANFP-------FCTIEPNTGVVPMPD---PRLDQ 52

Query: 445 VTEIQRKRHSAPD----VSFKGRVRKVAK 519
           + EI + + + P     V   G V+  +K
Sbjct: 53  LAEIVKPQRTLPTTMEFVDIAGLVKGASK 81

>ENGD_ECO57 (P0ABU3) GTP-dependent nucleic acid-binding protein engD|
          Length = 362

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = +1

Query: 265 KCVVIGLQSTGEARTEEAVTKYGVEMEDFVSGPRELLLKLVEENYPLPPKPDSFQQGEEK 444
           KC ++GL + G++    A+TK G+E  +F           +E N  + P PD      ++
Sbjct: 3   KCGIVGLPNVGKSTLFNALTKAGIEAANFP-------FCTIEPNTGVVPMPD---PRLDQ 52

Query: 445 VTEIQRKRHSAPD----VSFKGRVRKVAK 519
           + EI + + + P     V   G V+  +K
Sbjct: 53  LAEIVKPQRTLPTTMEFVDIAGLVKGASK 81

>JHD3C_HUMAN (Q9H3R0) JmjC domain-containing histone demethylation protein 3C|
           (EC 1.14.11.-) (Jumonji domain-containing protein 2C)
           (Gene amplified in squamous cell carcinoma 1 protein)
           (GASC-1 protein)
          Length = 1056

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 631 EEEKSLLLNCSGCSLRVHPSC 693
           E+  SLL++C+ C +RVH SC
Sbjct: 709 EDGTSLLISCAKCCVRVHASC 729

>JAD1C_HUMAN (P41229) Jumonji/ARID domain-containing protein 1C (SmcX protein)|
           (Xe169 protein)
          Length = 1560

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 607 HMCQICNSEEEKSLLLNCSGCSLRVHPSCL 696
           ++C++C+  +E   LL C GC    H  CL
Sbjct: 325 YVCRMCSRGDEDDKLLLCDGCDDNYHIFCL 354

>JAD1C_MOUSE (P41230) Jumonji/ARID domain-containing protein 1C (SmcX protein)|
           (Xe169 protein)
          Length = 1554

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 607 HMCQICNSEEEKSLLLNCSGCSLRVHPSCL 696
           ++C++C+  +E   LL C GC    H  CL
Sbjct: 325 YVCRMCSRGDEDDKLLLCDGCDDNYHIFCL 354

>RL21_MOUSE (O09167) 60S ribosomal protein L21|
          Length = 159

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
 Frame = +1

Query: 184 QRFFRHMCMSAKVPAVVKLAKEALAENKCVVIGLQSTGEARTEEAVTKYGVEMEDFV-SG 360
           Q+   H C   K   V  + + A+     +++  Q  G+   +    +  V +E    S 
Sbjct: 48  QKGMPHKCYHGKTGRVYNVTQHAVG----IIVNKQVKGKILAK----RINVRIEHIKHSK 99

Query: 361 PRELLLKLVEENYPLPPKPDSFQQGEEKVTEIQRKRHSAP 480
            R+  LK V+EN          ++ +EK T +Q KRH+AP
Sbjct: 100 SRDSFLKRVKEN------DQKKKEAKEKGTWVQLKRHAAP 133


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,831,864
Number of Sequences: 219361
Number of extensions: 1293610
Number of successful extensions: 4228
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 4148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4228
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6969622431
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)