ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal36o15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 973 bits (491), Expect = 0.0 Identities = 530/538 (98%), Gaps = 4/538 (0%) Strand = Plus / Plus Query: 7 ccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagtagcatggctgctgc 66 ||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| Sbjct: 96 ccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacag-ag-atggctgctgc 152 Query: 67 cttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagct 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 153 cttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagct 212 Query: 127 caagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggtt 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 213 caagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggtt 272 Query: 187 cacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtct 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 273 cacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtct 332 Query: 247 tgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactc 306 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 333 tgctaccgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactc 392 Query: 307 gctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagta 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 393 gctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagta 452 Query: 367 cgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgc 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 453 cgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgc 512 Query: 427 tcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaa 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 513 tcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaa 572 Query: 487 catcaagatcccactcatnttgggtatcctggggaggcaagggtcaaggaaaatcatt 544 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 573 catcaagatcccactcatcttgggtat-ctggggaggcaagggtcaaggaaaatcatt 629
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 890 bits (449), Expect = 0.0 Identities = 514/532 (96%), Gaps = 3/532 (0%) Strand = Plus / Plus Query: 10 cgcgcatccaccgttgctagcaaggtcgaccaagcagcacagtagcatggctgctgcctt 69 ||||||||||||| ||||||||||||||| |||||||||||| || |||||||||||||| Sbjct: 18 cgcgcatccaccgctgctagcaaggtcgagcaagcagcacag-ag-atggctgctgcctt 75 Query: 70 ctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagctcaa 129 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 76 ctcctccaccgtcggtgccccggcttctacgccgaccaacttcctcgggaagaagctcaa 135 Query: 130 gaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcac 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 136 gaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcac 195 Query: 190 agtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgc 249 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 196 ggtcatggcagcggaaaacatcgacgagaagaggaacaccgacaagtggaagggtcttgc 255 Query: 250 gtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgct 309 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 256 gtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactccct 315 Query: 310 cttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgt 369 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 316 cttccaggcgcccactggcgacggcacccacgaggccgtcctcagctcatacgagtacgt 375 Query: 370 cagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgctcc 429 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 376 cagccagggactcaagaagtacgacttcgacaacaccatgggaggcttctacatcgctcc 435 Query: 430 tgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacat 489 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 436 tgctttcatggacaagcttgttgtccatctctccaagaacttcatgaccctgcccaacat 495 Query: 490 caagatcccactcatnttgggtatcctggggaggcaagggtcaaggaaaatc 541 ||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 496 caagatcccactcatcttgggtat-ctggggaggcaagggtcaaggaaaatc 546
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 783 bits (395), Expect = 0.0 Identities = 401/403 (99%) Strand = Plus / Plus Query: 91 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577 Query: 151 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637 Query: 211 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697 Query: 271 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggcga 330 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757 Query: 331 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5758 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 5817 Query: 391 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5818 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 5877 Query: 451 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 493 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5878 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 5920 Score = 285 bits (144), Expect = 8e-74 Identities = 258/295 (87%), Gaps = 1/295 (0%) Strand = Plus / Plus Query: 235 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 294 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998 Query: 295 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 354 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058 Query: 355 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 414 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 3118 Query: 415 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 474 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 3119 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 3178 Query: 475 gaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaaggg 529 ||| || |||||||||||| | || ||||| ||||||| ||||||||||||||| Sbjct: 3179 gacactccccaacatcaaggttcctctcatcctgggtat-ctggggaggcaaggg 3232 Score = 123 bits (62), Expect = 7e-25 Identities = 83/86 (96%), Gaps = 3/86 (3%) Strand = Plus / Plus Query: 7 ccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagtagcatggctgctgc 66 ||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| Sbjct: 5316 ccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacag-ag-atggctgctgc 5372 Query: 67 cttctcctccaccgtcggggctccgg 92 |||||||||||||||||||||||||| Sbjct: 5373 cttctcctccaccgtcggggctccgg 5398 Score = 83.8 bits (42), Expect = 6e-13 Identities = 51/53 (96%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 492 agatcccactcatnttgggtatcctggggaggcaagggtcaaggaaaatcatt 544 ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct: 6070 agatcccactcatcttgggtatc-tggggaggcaagggtcaaggaaaatcatt 6121
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 698 bits (352), Expect = 0.0 Identities = 370/375 (98%), Gaps = 1/375 (0%) Strand = Plus / Plus Query: 170 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60 Query: 230 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 289 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 61 gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120 Query: 290 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180 Query: 350 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 240 Query: 410 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 300 Query: 470 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaaggg 529 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 301 ttcatgaccctgcccaacatcaagatcccactcatcttgggtat-ctggggaggcaaggg 359 Query: 530 tcaaggaaaatcatt 544 ||||||||||||||| Sbjct: 360 tcaaggaaaatcatt 374
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 422 bits (213), Expect = e-115 Identities = 288/312 (92%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 230 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 289 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316 Query: 290 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 349 ||||| ||||| ||||| || ||||||||||||| |||||| |||||||||||||||||| Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376 Query: 350 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 409 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436 Query: 410 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 469 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 437 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 496 Query: 470 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaaggg 529 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| Sbjct: 497 ttcatgaccctgcccaacatcaagatcccactcatcttgggtat-ctggggaggaaaggg 555 Query: 530 tcaaggaaaatc 541 ||| || ||||| Sbjct: 556 tcaggggaaatc 567 Score = 220 bits (111), Expect = 4e-54 Identities = 135/143 (94%) Strand = Plus / Plus Query: 56 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 115 ||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||| Sbjct: 80 atggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagcttcctc 139 Query: 116 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 175 || || |||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct: 140 ggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagcttcaag 199 Query: 176 gccaacaggttcacagtcatggc 198 |||||||||||||| |||||||| Sbjct: 200 gccaacaggttcaccgtcatggc 222
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 402 bits (203), Expect = e-109 Identities = 285/312 (91%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 230 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 289 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306 Query: 290 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 349 ||||| ||||| ||||| | ||||||||||||| |||||| || ||||||||||||||| Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366 Query: 350 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 409 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426 Query: 410 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 469 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 427 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 486 Query: 470 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaaggg 529 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| Sbjct: 487 ttcatgaccctgcccaacatcaagatcccactcatcttgggtat-ctggggaggaaaggg 545 Query: 530 tcaaggaaaatc 541 ||| || ||||| Sbjct: 546 tcaggggaaatc 557 Score = 214 bits (108), Expect = 2e-52 Identities = 134/143 (93%) Strand = Plus / Plus Query: 56 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 115 ||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||||| Sbjct: 70 atggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagcttcctc 129 Query: 116 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 175 || || |||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct: 130 ggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagcttcaag 189 Query: 176 gccaacaggttcacagtcatggc 198 |||||||||||||| |||||||| Sbjct: 190 gccaacaggttcaccgtcatggc 212
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 359 bits (181), Expect = 6e-96 Identities = 280/312 (89%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 230 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 289 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263 Query: 290 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 349 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323 Query: 350 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 409 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383 Query: 410 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 469 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 384 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 443 Query: 470 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaaggg 529 ||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||||||| Sbjct: 444 ttcatgaccctccccaacatcaaggtcccactcatcctgggtat-ctggggaggcaaggg 502 Query: 530 tcaaggaaaatc 541 ||| |||||||| Sbjct: 503 tcagggaaaatc 514 Score = 168 bits (85), Expect = 1e-38 Identities = 121/133 (90%) Strand = Plus / Plus Query: 56 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 115 |||||||||||||||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 27 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 86 Query: 116 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 175 ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 87 gggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctccaac 146 Query: 176 gccaacaggttca 188 ||||||||||| Sbjct: 147 atcaacaggttca 159
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 359 bits (181), Expect = 6e-96 Identities = 280/312 (89%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 230 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 289 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300 Query: 290 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 349 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360 Query: 350 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 409 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420 Query: 410 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 469 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 421 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 480 Query: 470 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaaggg 529 ||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||||||| Sbjct: 481 ttcatgaccctccccaacatcaaggtcccactcatcctgggtat-ctggggaggcaaggg 539 Query: 530 tcaaggaaaatc 541 ||| |||||||| Sbjct: 540 tcagggaaaatc 551 Score = 168 bits (85), Expect = 1e-38 Identities = 121/133 (90%) Strand = Plus / Plus Query: 56 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 115 |||||||||||||||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 64 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 123 Query: 116 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 175 ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 124 gggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctccaac 183 Query: 176 gccaacaggttca 188 ||||||||||| Sbjct: 184 atcaacaggttca 196
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 359 bits (181), Expect = 6e-96 Identities = 280/312 (89%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 230 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 289 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 290 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 349 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359 Query: 350 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 409 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419 Query: 410 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 469 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 420 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 479 Query: 470 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaaggg 529 ||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||||||| Sbjct: 480 ttcatgaccctccccaacatcaaggtcccactcatcctgggtat-ctggggaggcaaggg 538 Query: 530 tcaaggaaaatc 541 ||| |||||||| Sbjct: 539 tcagggaaaatc 550 Score = 168 bits (85), Expect = 1e-38 Identities = 121/133 (90%) Strand = Plus / Plus Query: 56 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 115 |||||||||||||||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 63 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 122 Query: 116 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 175 ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 123 gggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctccaac 182 Query: 176 gccaacaggttca 188 ||||||||||| Sbjct: 183 atcaacaggttca 195
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 359 bits (181), Expect = 6e-96 Identities = 280/312 (89%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 230 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 289 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 24 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83 Query: 290 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 349 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 84 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143 Query: 350 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 409 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203 Query: 410 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 469 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 204 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 263 Query: 470 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaaggg 529 ||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||||||| Sbjct: 264 ttcatgaccctccccaacatcaaggtcccactcatcctgggtat-ctggggaggcaaggg 322 Query: 530 tcaaggaaaatc 541 ||| |||||||| Sbjct: 323 tcagggaaaatc 334
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 359 bits (181), Expect = 6e-96 Identities = 280/312 (89%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 230 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 289 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304 Query: 290 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 349 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364 Query: 350 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 409 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424 Query: 410 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 469 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 425 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 484 Query: 470 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaaggg 529 ||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||||||| Sbjct: 485 ttcatgaccctccccaacatcaaggtcccactcatcctgggtat-ctggggaggcaaggg 543 Query: 530 tcaaggaaaatc 541 ||| |||||||| Sbjct: 544 tcagggaaaatc 555 Score = 161 bits (81), Expect = 3e-36 Identities = 120/133 (90%) Strand = Plus / Plus Query: 56 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 115 |||||||||||||||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 68 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 127 Query: 116 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 175 ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 128 gggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctccaac 187 Query: 176 gccaacaggttca 188 ||||||||||| Sbjct: 188 atcaacaggttca 200
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 359 bits (181), Expect = 6e-96 Identities = 280/312 (89%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 230 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 289 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298 Query: 290 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 349 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358 Query: 350 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 409 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418 Query: 410 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 469 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 419 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 478 Query: 470 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaaggg 529 ||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||||||| Sbjct: 479 ttcatgaccctccccaacatcaaggtcccactcatcctgggtat-ctggggaggcaaggg 537 Query: 530 tcaaggaaaatc 541 ||| |||||||| Sbjct: 538 tcagggaaaatc 549 Score = 168 bits (85), Expect = 1e-38 Identities = 121/133 (90%) Strand = Plus / Plus Query: 56 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 115 |||||||||||||||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 62 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 121 Query: 116 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 175 ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 122 gggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctccaac 181 Query: 176 gccaacaggttca 188 ||||||||||| Sbjct: 182 atcaacaggttca 194
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 351 bits (177), Expect = 2e-93 Identities = 279/312 (89%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 230 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 289 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271 Query: 290 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 349 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331 Query: 350 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 409 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391 Query: 410 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 469 ||||||||||||||||| ||| |||||||||||||||| || ||||| ||||||| ||| Sbjct: 392 ggaggcttctacatcgccccttctttcatggacaagctcgtcgtccacatctccaagaac 451 Query: 470 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaaggg 529 ||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||||||| Sbjct: 452 ttcatgaccctccccaacatcaaggtcccactcatcctgggtat-ctggggaggcaaggg 510 Query: 530 tcaaggaaaatc 541 ||| |||||||| Sbjct: 511 tcagggaaaatc 522 Score = 168 bits (85), Expect = 1e-38 Identities = 121/133 (90%) Strand = Plus / Plus Query: 56 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 115 |||||||||||||||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 35 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 94 Query: 116 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 175 ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 95 gggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctccaac 154 Query: 176 gccaacaggttca 188 ||||||||||| Sbjct: 155 atcaacaggttca 167
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 351 bits (177), Expect = 2e-93 Identities = 279/312 (89%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 230 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 289 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311 Query: 290 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 349 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371 Query: 350 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 409 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431 Query: 410 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 469 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 432 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 491 Query: 470 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaaggg 529 ||||||||||| |||||||||||| ||||||||| ||||||| ||||||||||||||| Sbjct: 492 ttcatgaccctccccaacatcaaggtcccactcaccctgggtat-ctggggaggcaaggg 550 Query: 530 tcaaggaaaatc 541 ||| |||||||| Sbjct: 551 tcagggaaaatc 562 Score = 168 bits (85), Expect = 1e-38 Identities = 121/133 (90%) Strand = Plus / Plus Query: 56 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 115 |||||||||||||||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 75 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 134 Query: 116 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 175 ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 135 gggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctccaac 194 Query: 176 gccaacaggttca 188 ||||||||||| Sbjct: 195 atcaacaggttca 207
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 293 bits (148), Expect = 3e-76 Identities = 259/295 (87%), Gaps = 1/295 (0%) Strand = Plus / Plus Query: 235 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 294 |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| || Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276 Query: 295 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 354 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336 Query: 355 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 414 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatggacgg 396 Query: 415 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 474 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 397 gctgtacatcgccccggcgttcatggacaagctcatcgtccacctcgccaagaacttcat 456 Query: 475 gaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaaggg 529 ||| || |||||||||||| |||| ||||| ||||||| ||||||||||||||| Sbjct: 457 gacactccccaacatcaaggtccctctcatcctgggtat-ctggggaggcaaggg 510 Score = 75.8 bits (38), Expect = 1e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 56 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 115 |||||| |||| ||||| |||||||| || |||||||| || || ||||||| ||||||| Sbjct: 26 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcctc 85 Query: 116 gggaagaagctcaagaagcagg 137 ||||||||| | |||||||||| Sbjct: 86 gggaagaaggtgaagaagcagg 107
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 285 bits (144), Expect = 8e-74 Identities = 258/295 (87%), Gaps = 1/295 (0%) Strand = Plus / Plus Query: 235 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 294 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429 Query: 295 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 354 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489 Query: 355 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 414 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 549 Query: 415 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 474 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 550 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 609 Query: 475 gaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaaggg 529 ||| || |||||||||||| | || ||||| ||||||| ||||||||||||||| Sbjct: 610 gacactccccaacatcaaggttcctctcatcctgggtat-ctggggaggcaaggg 663
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 224 bits (113), Expect = 2e-55 Identities = 170/188 (90%), Gaps = 1/188 (0%) Strand = Plus / Plus Query: 354 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 413 |||||||||||||| |||||||||| || | | |||||||||||||||||||||||||| Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386 Query: 414 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 473 ||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||||||| Sbjct: 387 gcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttca 446 Query: 474 tgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaagggtcaa 533 ||||||| |||||||||||| |||||||||| ||||||| |||||||||||||||||| Sbjct: 447 tgaccctccccaacatcaaggtcccactcatcctgggtat-ctggggaggcaagggtcag 505 Query: 534 ggaaaatc 541 |||||||| Sbjct: 506 ggaaaatc 513 Score = 168 bits (85), Expect = 1e-38 Identities = 121/133 (90%) Strand = Plus / Plus Query: 56 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctc 115 |||||||||||||||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 63 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 122 Query: 116 gggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaag 175 ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 123 gggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctccaac 182 Query: 176 gccaacaggttca 188 ||||||||||| Sbjct: 183 atcaacaggttca 195 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 230 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 289 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 290 aagggcatcgtggactcgctcttccaggc 318 ||||| |||| ||||| || |||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 204 bits (103), Expect = 2e-49 Identities = 142/154 (92%), Gaps = 1/154 (0%) Strand = Plus / Minus Query: 388 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 447 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 109376 Query: 448 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatntt 507 || ||||| ||||||| |||||||||||||| |||||||||||| |||||||||| | Sbjct: 109375 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 109316 Query: 508 gggtatcctggggaggcaagggtcaaggaaaatc 541 |||||| |||||||||||||||||| |||||||| Sbjct: 109315 gggtat-ctggggaggcaagggtcagggaaaatc 109283 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 230 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 289 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647 Query: 290 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 349 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587 Query: 350 ctcagctcctacgagtacgtcagccaggg 378 |||||||||||||||||| |||||||||| Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 235 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 294 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146 Query: 295 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 345 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 101 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 160 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779 Query: 161 ggcaagagctccaaggccaacaggttca 188 |||||||||||||| ||||||||||| Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 56 atggctgctgccttctcctccaccgtcggggctccgg 92 |||||||||||||||||||||||||| || ||||||| Sbjct: 109982 atggctgctgccttctcctccaccgttggagctccgg 109946
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 204 bits (103), Expect = 2e-49 Identities = 142/154 (92%), Gaps = 1/154 (0%) Strand = Plus / Minus Query: 388 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 447 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 31253 Query: 448 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatntt 507 || ||||| ||||||| |||||||||||||| |||||||||||| |||||||||| | Sbjct: 31252 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 31193 Query: 508 gggtatcctggggaggcaagggtcaaggaaaatc 541 |||||| |||||||||||||||||| |||||||| Sbjct: 31192 gggtat-ctggggaggcaagggtcagggaaaatc 31160 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 230 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 289 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524 Query: 290 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 349 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464 Query: 350 ctcagctcctacgagtacgtcagccaggg 378 |||||||||||||||||| |||||||||| Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 235 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 294 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023 Query: 295 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 345 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 101 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 160 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656 Query: 161 ggcaagagctccaaggccaacaggttca 188 |||||||||||||| ||||||||||| Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 56 atggctgctgccttctcctccaccgtcggggctccgg 92 |||||||||||||||||||||||||| || ||||||| Sbjct: 31859 atggctgctgccttctcctccaccgttggagctccgg 31823
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 204 bits (103), Expect = 2e-49 Identities = 142/154 (92%), Gaps = 1/154 (0%) Strand = Plus / Minus Query: 388 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 447 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28304515 Query: 448 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatntt 507 || ||||| ||||||| |||||||||||||| |||||||||||| |||||||||| | Sbjct: 28304514 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28304455 Query: 508 gggtatcctggggaggcaagggtcaaggaaaatc 541 |||||| |||||||||||||||||| |||||||| Sbjct: 28304454 gggtat-ctggggaggcaagggtcagggaaaatc 28304422 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 230 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 289 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786 Query: 290 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 349 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726 Query: 350 ctcagctcctacgagtacgtcagccaggg 378 |||||||||||||||||| |||||||||| Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 235 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 294 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285 Query: 295 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 345 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 101 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 160 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918 Query: 161 ggcaagagctccaaggccaacaggttca 188 |||||||||||||| ||||||||||| Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 56 atggctgctgccttctcctccaccgtcggggctccgg 92 |||||||||||||||||||||||||| || ||||||| Sbjct: 28305121 atggctgctgccttctcctccaccgttggagctccgg 28305085
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 204 bits (103), Expect = 2e-49 Identities = 142/154 (92%), Gaps = 1/154 (0%) Strand = Plus / Minus Query: 388 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 447 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28286964 Query: 448 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatntt 507 || ||||| ||||||| |||||||||||||| |||||||||||| |||||||||| | Sbjct: 28286963 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28286904 Query: 508 gggtatcctggggaggcaagggtcaaggaaaatc 541 |||||| |||||||||||||||||| |||||||| Sbjct: 28286903 gggtat-ctggggaggcaagggtcagggaaaatc 28286871 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 230 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 289 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235 Query: 290 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 349 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175 Query: 350 ctcagctcctacgagtacgtcagccaggg 378 |||||||||||||||||| |||||||||| Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 235 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 294 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734 Query: 295 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 345 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 101 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 160 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367 Query: 161 ggcaagagctccaaggccaacaggttca 188 |||||||||||||| ||||||||||| Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 56 atggctgctgccttctcctccaccgtcggggctccgg 92 |||||||||||||||||||||||||| || ||||||| Sbjct: 28287570 atggctgctgccttctcctccaccgttggagctccgg 28287534
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 184 bits (93), Expect = 2e-43 Identities = 258/312 (82%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 230 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 289 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 290 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 349 |||||| |||| ||| |||||||||||||| | ||| ||||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332 Query: 350 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 409 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 410 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 469 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 470 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaaggg 529 |||||||||||||| ||||||||| | || ||||| ||||||| |||||||||||| || Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtat-ctggggaggcaaagg 511 Query: 530 tcaaggaaaatc 541 || |||||||| Sbjct: 512 ccagggaaaatc 523 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 56 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 109 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 110 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 166 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 167 agctcca 173 ||||||| Sbjct: 141 agctcca 147
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 176 bits (89), Expect = 5e-41 Identities = 230/276 (83%), Gaps = 1/276 (0%) Strand = Plus / Plus Query: 266 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 325 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294 Query: 326 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 385 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 354 Query: 386 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 445 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 355 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 414 Query: 446 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatn 505 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 415 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 474 Query: 506 ttgggtatcctggggaggcaagggtcaaggaaaatc 541 |||||||| |||||||||||| |||||||| ||||| Sbjct: 475 ttgggtat-ctggggaggcaaaggtcaagggaaatc 509
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 176 bits (89), Expect = 5e-41 Identities = 230/276 (83%), Gaps = 1/276 (0%) Strand = Plus / Plus Query: 266 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 325 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 98 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157 Query: 326 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 385 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 217 Query: 386 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 445 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 218 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 277 Query: 446 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatn 505 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 278 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 337 Query: 506 ttgggtatcctggggaggcaagggtcaaggaaaatc 541 |||||||| |||||||||||| |||||||| ||||| Sbjct: 338 ttgggtat-ctggggaggcaaaggtcaagggaaatc 372
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 168 bits (85), Expect = 1e-38 Identities = 229/276 (82%), Gaps = 1/276 (0%) Strand = Plus / Plus Query: 266 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 325 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187 Query: 326 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 385 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 247 Query: 386 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 445 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 248 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 307 Query: 446 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatn 505 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 308 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 367 Query: 506 ttgggtatcctggggaggcaagggtcaaggaaaatc 541 |||||||| |||||||||||| ||||| || ||||| Sbjct: 368 ttgggtat-ctggggaggcaaaggtcaggggaaatc 402
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 155 bits (78), Expect = 2e-34 Identities = 253/312 (81%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 230 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 289 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 290 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 349 |||||| |||| ||| |||||||||||||| | |||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332 Query: 350 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 409 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 410 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 469 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 470 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaaggg 529 |||||||||||||| ||||||||| | || ||||| |||||||| | ||||||||| || Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatcgt-gggaggcaaagg 511 Query: 530 tcaaggaaaatc 541 || |||||||| Sbjct: 512 ccagggaaaatc 523 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 56 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 109 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 110 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 166 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 167 agctcca 173 ||||||| Sbjct: 141 agctcca 147
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 133 bits (67), Expect = 7e-28 Identities = 247/306 (80%), Gaps = 1/306 (0%) Strand = Plus / Plus Query: 236 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 295 |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaaaggt 339 Query: 296 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 355 || || ||||| | ||||| || |||| | ||| || || ||| | || ||| | ||| Sbjct: 340 atggtcgactcattgttccaagctcccatgaacgatggtactcactatgctgtcatgagc 399 Query: 356 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 415 ||||| |||||| | ||||| ||||| || | |||||||| ||||||| ||||| || Sbjct: 400 tcctatgagtacattagccaaggccttcgcacatacgacttggacaacaacatggatgga 459 Query: 416 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 475 |||||||| || || ||||||||||||||||||||||| || || |||| |||| |||| Sbjct: 460 ttctacattgccccagctttcatggacaagcttgttgttcacatcaccaagaactacatg 519 Query: 476 accctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaagggtcaagg 535 ||||| || ||||| ||| | || || || |||||||| ||||||||||| |||||||| Sbjct: 520 acccttcctaacattaaggttcctcttatcttgggtat-ttggggaggcaaaggtcaagg 578 Query: 536 aaaatc 541 |||||| Sbjct: 579 aaaatc 584
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 131 bits (66), Expect = 3e-27 Identities = 159/189 (84%), Gaps = 1/189 (0%) Strand = Plus / Plus Query: 356 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 415 |||||||| ||||||||||| || || || ||||| |||| ||||||| ||| || Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455 Query: 416 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 475 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| || Sbjct: 456 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttg 515 Query: 476 accctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaagggtcaagg 535 | |||||||||||||| | ||||| || |||||||| |||||||||||| |||||||| Sbjct: 516 aaattgcccaacatcaaggttccacttatcttgggtat-ctggggaggcaaaggtcaagg 574 Query: 536 aaaatcatt 544 |||||||| Sbjct: 575 caaatcatt 583
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 119 bits (60), Expect = 1e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 347 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 406 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 407 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 466 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 467 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaa 526 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtat-atggggaggcaa 674 Query: 527 gggtcaaggaaaatc 541 |||||||| ||||| Sbjct: 675 aggtcaaggtaaatc 689
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 119 bits (60), Expect = 1e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 347 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 406 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 407 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 466 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 467 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaa 526 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtat-atggggaggcaa 674 Query: 527 gggtcaaggaaaatc 541 |||||||| ||||| Sbjct: 675 aggtcaaggtaaatc 689
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 119 bits (60), Expect = 1e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 347 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 406 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 407 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 466 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 467 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaa 526 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtat-atggggaggcaa 703 Query: 527 gggtcaaggaaaatc 541 |||||||| ||||| Sbjct: 704 aggtcaaggtaaatc 718
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 119 bits (60), Expect = 1e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 347 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 406 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 407 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 466 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 467 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaa 526 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtat-atggggaggcaa 585 Query: 527 gggtcaaggaaaatc 541 |||||||| ||||| Sbjct: 586 aggtcaaggtaaatc 600
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 119 bits (60), Expect = 1e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 347 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 406 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 322 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 381 Query: 407 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 466 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 382 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 441 Query: 467 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaa 526 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 442 aacttcttgactctgcctaacatcaaggttccacttattttgggtat-atggggaggcaa 500 Query: 527 gggtcaaggaaaatc 541 |||||||| ||||| Sbjct: 501 aggtcaaggtaaatc 515
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 119 bits (60), Expect = 1e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 347 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 406 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 407 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 466 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 467 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaa 526 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtat-atggggaggcaa 588 Query: 527 gggtcaaggaaaatc 541 |||||||| ||||| Sbjct: 589 aggtcaaggtaaatc 603
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 119 bits (60), Expect = 1e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 347 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 406 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 399 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 458 Query: 407 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 466 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 459 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 518 Query: 467 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaa 526 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 519 aacttcttgactctgcctaacatcaaggttccacttattttgggtat-atggggaggcaa 577 Query: 527 gggtcaaggaaaatc 541 |||||||| ||||| Sbjct: 578 aggtcaaggtaaatc 592
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 119 bits (60), Expect = 1e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 347 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 406 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 407 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 466 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 467 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaa 526 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtat-atggggaggcaa 585 Query: 527 gggtcaaggaaaatc 541 |||||||| ||||| Sbjct: 586 aggtcaaggtaaatc 600
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 119 bits (60), Expect = 1e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 347 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 406 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 407 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 466 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 467 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaa 526 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtat-atggggaggcaa 588 Query: 527 gggtcaaggaaaatc 541 |||||||| ||||| Sbjct: 589 aggtcaaggtaaatc 603
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 119 bits (60), Expect = 1e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 347 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 406 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 407 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 466 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 467 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaa 526 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtat-atggggaggcaa 703 Query: 527 gggtcaaggaaaatc 541 |||||||| ||||| Sbjct: 704 aggtcaaggtaaatc 718
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 109 bits (55), Expect = 1e-20 Identities = 109/126 (86%), Gaps = 1/126 (0%) Strand = Plus / Plus Query: 416 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 475 ||||||||||||||| |||||||||||||||||||||| || || |||| |||||| || Sbjct: 426 ttctacatcgctccttctttcatggacaagcttgttgttcacatcaccaagaacttcttg 485 Query: 476 accctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaagggtcaagg 535 | |||||||||||||| | |||||||| |||||| | |||||||||||| |||||||| Sbjct: 486 aaattgcccaacatcaaggttccactcattttgggtgt-ctggggaggcaaaggtcaagg 544 Query: 536 aaaatc 541 ||||| Sbjct: 545 taaatc 550
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 105 bits (53), Expect = 2e-19 Identities = 113/132 (85%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 413 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 472 ||||||||||| || ||||||||||||||||| |||||||| || || |||| |||||| Sbjct: 434 ggcttctacattgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttc 493 Query: 473 atgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaagggtca 532 |||| |||||||||||||| | |||||||| |||||| | ||||||||||| ||||| Sbjct: 494 ttgacattgcccaacatcaaggttccactcatcttgggtgt-atggggaggcaaaggtca 552 Query: 533 aggaaaatcatt 544 ||| |||||||| Sbjct: 553 aggtaaatcatt 564
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 103 bits (52), Expect = 6e-19 Identities = 106/123 (86%), Gaps = 1/123 (0%) Strand = Plus / Plus Query: 419 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 478 ||||||||||| || ||||||||||||||||| || || || |||| |||||||||| | Sbjct: 87 tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 146 Query: 479 ctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaagggtcaaggaaa 538 |||||||||||||||| || ||||| |||||||| |||||||||||| ||||| || || Sbjct: 147 ttgcccaacatcaagattcctctcattttgggtat-ctggggaggcaaaggtcaggggaa 205 Query: 539 atc 541 ||| Sbjct: 206 atc 208
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 103 bits (52), Expect = 6e-19 Identities = 106/123 (86%), Gaps = 1/123 (0%) Strand = Plus / Plus Query: 416 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 475 |||||||| ||||||||||| |||||||||||||||| || || |||| ||||||||| Sbjct: 469 ttctacattgctcctgcttttctggacaagcttgttgttcacatcaccaagaacttcatg 528 Query: 476 accctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaagggtcaagg 535 ||| |||||||||||||| | || ||||| | ||||| ||||||||||||||| ||||| Sbjct: 529 accttgcccaacatcaaggttcctctcattcttggtat-ctggggaggcaagggacaagg 587 Query: 536 aaa 538 ||| Sbjct: 588 aaa 590 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 236 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 294 ||||||||||| || ||||||||||| || ||||| || |||||||| || |||||||| Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 103 bits (52), Expect = 6e-19 Identities = 160/195 (82%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 347 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 406 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 391 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 450 Query: 407 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 466 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 451 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 510 Query: 467 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaa 526 |||||| |||| ||||| ||||||||| | ||||| || ||||| || |||||||||| Sbjct: 511 aacttcttgactctgcctaacatcaaggttccacttattttggg-ctctcggggaggcaa 569 Query: 527 gggtcaaggaaaatc 541 |||||||| ||||| Sbjct: 570 aggtcaaggtaaatc 584
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 101 bits (51), Expect = 2e-18 Identities = 108/126 (85%), Gaps = 1/126 (0%) Strand = Plus / Plus Query: 416 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 475 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 476 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 535 Query: 476 accctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaagggtcaagg 535 || || |||||||| ||| | || ||||| |||||||| ||||||||| || |||||||| Sbjct: 536 actctccccaacataaaggttcctctcattttgggtat-ctggggaggtaaaggtcaagg 594 Query: 536 aaaatc 541 ||||| Sbjct: 595 taaatc 600
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 99.6 bits (50), Expect = 9e-18 Identities = 110/129 (85%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 416 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 475 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| | Sbjct: 473 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttctta 532 Query: 476 accctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaagggtcaagg 535 || |||||||||||||| | ||||| || |||||| | |||||||| || |||||||| Sbjct: 533 acgttgcccaacatcaaggttccacttattttgggtgt-ttggggaggaaaaggtcaagg 591 Query: 536 aaaatcatt 544 |||||||| Sbjct: 592 taaatcatt 600
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 99.6 bits (50), Expect = 9e-18 Identities = 104/121 (85%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 418 ctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgac 477 |||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||||| Sbjct: 156 ctacattgctcctgcttttatggacaagcttgttgttcacatctcgaaaaacttcatgaa 215 Query: 478 cctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaagggtcaaggaa 537 | |||| ||||||||| | || ||||| | ||||| |||||||||||||||||||||| Sbjct: 216 cttgcctaacatcaaggttcctctcattcttggtat-ttggggaggcaagggtcaaggaa 274 Query: 538 a 538 | Sbjct: 275 a 275
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 99.6 bits (50), Expect = 9e-18 Identities = 107/125 (85%), Gaps = 1/125 (0%) Strand = Plus / Plus Query: 417 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatga 476 ||||||| || ||||| || ||||||||||||||||| || || |||| |||||| ||| Sbjct: 630 tctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttcttga 689 Query: 477 ccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaagggtcaagga 536 | |||||||||||||||| |||||||| |||||| | |||||||||||||||||||| Sbjct: 690 acttgcccaacatcaagataccactcatcttgggtgt-ttggggaggcaagggtcaaggt 748 Query: 537 aaatc 541 ||||| Sbjct: 749 aaatc 753
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 97.6 bits (49), Expect = 4e-17 Identities = 121/144 (84%), Gaps = 1/144 (0%) Strand = Plus / Plus Query: 398 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 457 ||||||| ||||| || |||||||| |||||||| |||||||||||||||||||| || Sbjct: 256 gacaacaacatggatggtttctacattgctcctgcattcatggacaagcttgttgttcac 315 Query: 458 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctg 517 || |||| ||||||||| |||| || ||||| ||| | || || || |||||||| || Sbjct: 316 atcaccaagaacttcatgtccctccctaacattaaggttcctctaatcttgggtat-ttg 374 Query: 518 gggaggcaagggtcaaggaaaatc 541 ||||||||| |||||||||||||| Sbjct: 375 gggaggcaaaggtcaaggaaaatc 398
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 97.6 bits (49), Expect = 4e-17 Identities = 94/108 (87%), Gaps = 1/108 (0%) Strand = Plus / Plus Query: 434 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 493 |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 22 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 81 Query: 494 atcccactcatnttgggtatcctggggaggcaagggtcaaggaaaatc 541 | || ||||| ||||||| |||||||||||| || || |||||||| Sbjct: 82 gttcccctcatcctgggtat-ctggggaggcaaaggccagggaaaatc 128
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 95.6 bits (48), Expect = 1e-16 Identities = 129/155 (83%), Gaps = 1/155 (0%) Strand = Plus / Plus Query: 387 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 446 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 447 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatnt 506 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || || | Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 507 tgggtatcctggggaggcaagggtcaaggaaaatc 541 ||||||| |||||||||||| |||||||||||||| Sbjct: 551 tgggtat-ctggggaggcaaaggtcaaggaaaatc 584
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 95.6 bits (48), Expect = 1e-16 Identities = 129/155 (83%), Gaps = 1/155 (0%) Strand = Plus / Plus Query: 387 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 446 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 447 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatnt 506 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || || | Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 507 tgggtatcctggggaggcaagggtcaaggaaaatc 541 ||||||| |||||||||||| |||||||||||||| Sbjct: 551 tgggtat-ctggggaggcaaaggtcaaggaaaatc 584
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 95.6 bits (48), Expect = 1e-16 Identities = 129/155 (83%), Gaps = 1/155 (0%) Strand = Plus / Plus Query: 387 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 446 ||||| |||| ||||||| || || || |||||||| ||||| ||||| ||||||||| Sbjct: 436 agtacaactttgacaacatcaaggatggtttctacattgctccagcttttttggacaagc 495 Query: 447 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatnt 506 ||||||| || || |||| |||||||||||| |||||||||||||| | || ||||| Sbjct: 496 ttgttgttcacatcgccaagaacttcatgaccttgcccaacatcaaggttcctctcattc 555 Query: 507 tgggtatcctggggaggcaagggtcaaggaaaatc 541 | ||| | ||||||||||||||| ||||||||||| Sbjct: 556 ttggtgt-ctggggaggcaagggacaaggaaaatc 589
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 89.7 bits (45), Expect = 9e-15 Identities = 120/144 (83%), Gaps = 1/144 (0%) Strand = Plus / Plus Query: 398 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 457 ||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| || Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggacaagcttgttgttcac 316 Query: 458 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatnttgggtatcctg 517 || ||| ||||||||| |||| || ||||| ||| | || || || ||||||| || Sbjct: 317 atcagcaagaacttcatgtccctccctaacattaaggttcctctaatcctgggtat-ttg 375 Query: 518 gggaggcaagggtcaaggaaaatc 541 ||||||||| |||||||||||||| Sbjct: 376 gggaggcaaaggtcaaggaaaatc 399
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 419 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 478 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 14910 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 14851 Query: 479 ctgcccaacatcaag 493 ||||| ||||||||| Sbjct: 14850 ctgcctaacatcaag 14836
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 419 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 478 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 2373 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 2432 Query: 479 ctgcccaacatcaag 493 ||||| ||||||||| Sbjct: 2433 ctgcctaacatcaag 2447
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 73.8 bits (37), Expect = 5e-10 Identities = 91/108 (84%), Gaps = 1/108 (0%) Strand = Plus / Plus Query: 425 gctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgccc 484 ||||| ||||| ||||||||||||||||| || || |||| |||||||||||||| || Sbjct: 485 gctcccgcttttatggacaagcttgttgttcacatcaccaagaacttcatgacccttcct 544 Query: 485 aacatcaagatcccactcatnttgggtatcctggggaggcaagggtca 532 ||||| ||| | || ||||| |||||||| ||||||||||| ||||| Sbjct: 545 aacatgaaggttcctctcatcttgggtat-ttggggaggcaaaggtca 591 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 259 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 318 |||||||||||| || |||||||| ||||| ||||| | |||||||| ||||||||||| Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 416 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 475 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 6 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 65 Query: 476 ac 477 || Sbjct: 66 ac 67
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 63.9 bits (32), Expect = 5e-07 Identities = 104/127 (81%), Gaps = 1/127 (0%) Strand = Plus / Plus Query: 415 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 474 ||||||||| || ||| |||||||||||||| ||||||| || || |||| |||| | | Sbjct: 514 cttctacattgccccttctttcatggacaagattgttgttcacatcaccaagaactactt 573 Query: 475 gaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaagggtcaag 534 || | |||| ||||||||| | || || || |||||||| ||||||||||| ||||||| Sbjct: 574 gaacttgcctaacatcaaggttcccctgatcttgggtat-ttggggaggcaaaggtcaag 632 Query: 535 gaaaatc 541 | ||||| Sbjct: 633 gtaaatc 639
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 415 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 474 ||||||||| || ||||| || ||||||||||||||||| || || |||| |||||| | Sbjct: 2067 cttctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttctt 2126 Query: 475 gaccctgcccaacatcaag 493 || | |||||||||||||| Sbjct: 2127 gaacttgcccaacatcaag 2145 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 492 agatcccactcatnttgggtatcctggggaggcaagggtcaaggaaaatc 541 |||| |||||||| |||||| | |||||||||||||||||||| ||||| Sbjct: 2238 agataccactcatcttgggtgtt-tggggaggcaagggtcaaggtaaatc 2286
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 398 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgt 453 ||||||||||||| || || ||||| || |||||||| ||||||||||||||||| Sbjct: 84295 gacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgt 84240
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 46.1 bits (23), Expect = 0.12 Identities = 101/126 (80%), Gaps = 1/126 (0%) Strand = Plus / Plus Query: 413 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 472 |||||||||||| ||||||||||| |||| ||| | ||||| | |||| |||||| Sbjct: 1128 ggcttctacatctctcctgctttcctggataagatgaccatccatgttgccaagaacttc 1187 Query: 473 atgaccctgcccaacatcaagatcccactcatnttgggtatcctggggaggcaagggtca 532 ||| ||||||||| |||||| | || ||||| ||||||| |||||| |||||||| || Sbjct: 1188 atggacctgcccaagatcaaggttcccctcatcctgggtat-ctggggtggcaagggcca 1246 Query: 533 aggaaa 538 ||||| Sbjct: 1247 gggaaa 1252
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 261 ccgacgaccagcaggacatcacc 283 ||||||||||||||||||||||| Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 303 actcgctcttccaggcgcccac 324 |||||||||||||||||||||| Sbjct: 2553524 actcgctcttccaggcgcccac 2553503
>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome Length = 1173390 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 118 gaagaagctcaagaagcaggtg 139 |||||||||||||||||||||| Sbjct: 632957 gaagaagctcaagaagcaggtg 632978
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 516 tggggaggcaagggtcaaggaaaatcatt 544 ||||||||||| ||||||||||| ||||| Sbjct: 7517 tggggaggcaaaggtcaaggaaagtcatt 7489
>gb|AC097714.3| Homo sapiens BAC clone RP11-324H7 from 4, complete sequence Length = 181756 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 accaagcagcacagtagcatg 58 ||||||||||||||||||||| Sbjct: 160158 accaagcagcacagtagcatg 160178
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 catggcagcggagaacatcg 212 |||||||||||||||||||| Sbjct: 1379894 catggcagcggagaacatcg 1379875
>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds Length = 2103 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tggctgctgccttctcctcc 76 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome Length = 10732 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 atctccgacgaccagcaggacatc 280 |||||| ||||||||||||||||| Sbjct: 8676 atctcccacgaccagcaggacatc 8653
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 gcagcggagaacatcgacga 216 |||||||||||||||||||| Sbjct: 173412 gcagcggagaacatcgacga 173393
>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA Length = 1685 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 cccacgggcgacggcacccacgag 343 ||||||||||||| |||||||||| Sbjct: 1369 cccacgggcgacgtcacccacgag 1392
>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) (AR), mRNA Length = 3577 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 gcaagagctccaaggccaac 181 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1), mRNA Length = 2502 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tggctgctgccttctcctcc 76 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ctgccttctcctccaccgtc 82 |||||||||||||||||||| Sbjct: 240861 ctgccttctcctccaccgtc 240842
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 ccctgcccaacatcaagatc 496 |||||||||||||||||||| Sbjct: 1130357 ccctgcccaacatcaagatc 1130376
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 catggcagcggagaacatcg 212 |||||||||||||||||||| Sbjct: 1380755 catggcagcggagaacatcg 1380736
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila) (NOTCH1), mRNA Length = 9312 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 cccacgggcgacggcacccacgag 343 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:1494 IMAGE:3533568), complete cds Length = 2464 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tggctgctgccttctcctcc 76 |||||||||||||||||||| Sbjct: 722 tggctgctgccttctcctcc 703
>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding protein 4 (LOC506402), mRNA Length = 7219 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 ctgctgccttctcctccacc 79 |||||||||||||||||||| Sbjct: 5008 ctgctgccttctcctccacc 4989
>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence Length = 457 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 ctgctgccttctcctccacc 79 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence Length = 470 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 ctgctgccttctcctccacc 79 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1) partial mRNA Length = 22443 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gaagaagctcaagaagcagg 137 |||||||||||||||||||| Sbjct: 8385 gaagaagctcaagaagcagg 8404
>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:5049 IMAGE:2900024), complete cds Length = 3237 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tggctgctgccttctcctcc 76 |||||||||||||||||||| Sbjct: 232 tggctgctgccttctcctcc 213
>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence Length = 193170 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 413 ggcttctacatcgctcctgctttc 436 ||||||| |||||||||||||||| Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3' end of the gene for activator of G-protein signalling 3 (AGS3), two novel genes, the CARD9 gene for caspase recruitment domain family member 9, the SNAPC4 gene for a 190kDa small nuclear RNA activating complex polypeptide 4, the SDCCAG3 gene for serologically defined colon cancer antigen 3, the INPP5E gene for a 72kDa inositol polyphosphate-5-phosphatase, the gene for phosphatidylinositol polyphosphate 5-phosphatase type IV (PPI5PIV), a novel gene (KIAA0310), the 3' end of the NOTCH1 gene for Notch homolog 1 translocation-associated (Drosophila) and twenty CpG islands, complete sequence Length = 188462 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 cccacgggcgacggcacccacgag 343 ||||||||||||| |||||||||| Sbjct: 166513 cccacgggcgacgtcacccacgag 166490
>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the gene for Hermansky-Pudlak syndrome-6 protein (HPS6), two pseudogenes for transcription elongation factor B (SIII), polypeptide 1, the LDB1 gene for LIM domain binding 1, a novel gene (KIAA0595), the NOLC1 gene for nucleolar and coiled-body phosphoprotein 1 and five CpG islands, complete sequence Length = 158434 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tggctgctgccttctcctcc 76 |||||||||||||||||||| Sbjct: 101054 tggctgctgccttctcctcc 101035
>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body phosphoprotein 1 mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tggctgctgccttctcctcc 76 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence Length = 147210 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 ccagagggaagggcatcgtg 301 |||||||||||||||||||| Sbjct: 35948 ccagagggaagggcatcgtg 35967
>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1812 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tggctgctgccttctcctcc 76 |||||||||||||||||||| Sbjct: 717 tggctgctgccttctcctcc 698
>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar to H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2288 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tggctgctgccttctcctcc 76 |||||||||||||||||||| Sbjct: 570 tggctgctgccttctcctcc 551
>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence Length = 141442 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gtccatctctccaaaaactt 471 |||||||||||||||||||| Sbjct: 63248 gtccatctctccaaaaactt 63229
>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds Length = 3577 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 gcaagagctccaaggccaac 181 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence Length = 81641 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 ccagagggaagggcatcgtg 301 |||||||||||||||||||| Sbjct: 47211 ccagagggaagggcatcgtg 47230
>gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 of 195 of the complete sequence Length = 10900 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 ccctgcccaacatcaagatc 496 |||||||||||||||||||| Sbjct: 7760 ccctgcccaacatcaagatc 7741
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds Length = 7693 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 cccacgggcgacggcacccacgag 343 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|AC021049.12| Homo sapiens 12 BAC RP11-904M10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175315 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 tagcatggctgctgccttct 71 |||||||||||||||||||| Sbjct: 121424 tagcatggctgctgccttct 121405
>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome V, complete sequence Length = 130299 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 172 caaggccaacaggttcacagtcat 195 ||||||||||||||||| |||||| Sbjct: 13824 caaggccaacaggttcagagtcat 13847
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 cgatatctccgacgaccagc 272 |||||||||||||||||||| Sbjct: 4182002 cgatatctccgacgaccagc 4181983
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 ccctgcccaacatcaagatc 496 |||||||||||||||||||| Sbjct: 1147720 ccctgcccaacatcaagatc 1147739
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 acagcccgcgcgcatccacc 21 |||||||||||||||||||| Sbjct: 3701511 acagcccgcgcgcatccacc 3701492
>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tggctgctgccttctcctcc 76 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete sequence Length = 219072 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 413 ggcttctacatcgctcctgctttc 436 ||||||| |||||||||||||||| Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848
>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V, complete sequence Length = 105589 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 172 caaggccaacaggttcacagtcat 195 ||||||||||||||||| |||||| Sbjct: 27506 caaggccaacaggttcagagtcat 27483
>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence Length = 187148 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 aagaagctcaagaagcaggt 138 |||||||||||||||||||| Sbjct: 44669 aagaagctcaagaagcaggt 44650
>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209755 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 tggctgctgccttctcctcc 76 |||||||||||||||||||| Sbjct: 46900 tggctgctgccttctcctcc 46919
>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds Length = 3727 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tggctgctgccttctcctcc 76 |||||||||||||||||||| Sbjct: 708 tggctgctgccttctcctcc 689
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 ccctgcccaacatcaagatc 496 |||||||||||||||||||| Sbjct: 1144872 ccctgcccaacatcaagatc 1144891
>gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltransferase (cdsA), group 1 outer membrane protein (omp1), LpxD (lpxD), FabZ (fabZ), and LpxA (lpxA) genes, complete cds Length = 8895 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 ccctgcccaacatcaagatc 496 |||||||||||||||||||| Sbjct: 8238 ccctgcccaacatcaagatc 8219
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end Length = 7332 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 cccacgggcgacggcacccacgag 343 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2502 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tggctgctgccttctcctcc 76 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,303,897 Number of Sequences: 3902068 Number of extensions: 4303897 Number of successful extensions: 79054 Number of sequences better than 10.0: 110 Number of HSP's better than 10.0 without gapping: 110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78418 Number of HSP's gapped (non-prelim): 575 length of query: 559 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 536 effective length of database: 17,143,297,704 effective search space: 9188807569344 effective search space used: 9188807569344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
