ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal37d10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06, complete sequence Length = 142068 Score = 48.1 bits (24), Expect = 0.011 Identities = 30/32 (93%) Strand = Plus / Plus Query: 13 ggcacgaagctggcttgtgaataagtgcaact 44 |||||||||||||| |||||||||||| |||| Sbjct: 35553 ggcacgaagctggcctgtgaataagtgtaact 35584
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.011 Identities = 30/32 (93%) Strand = Plus / Plus Query: 13 ggcacgaagctggcttgtgaataagtgcaact 44 |||||||||||||| |||||||||||| |||| Sbjct: 25300949 ggcacgaagctggcctgtgaataagtgtaact 25300980
>dbj|AK098851.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H08, full insert sequence Length = 1630 Score = 48.1 bits (24), Expect = 0.011 Identities = 30/32 (93%) Strand = Plus / Plus Query: 13 ggcacgaagctggcttgtgaataagtgcaact 44 |||||||||||||| |||||||||||| |||| Sbjct: 1274 ggcacgaagctggcctgtgaataagtgtaact 1305
>dbj|AK061747.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-G02, full insert sequence Length = 1685 Score = 48.1 bits (24), Expect = 0.011 Identities = 30/32 (93%) Strand = Plus / Plus Query: 13 ggcacgaagctggcttgtgaataagtgcaact 44 |||||||||||||| |||||||||||| |||| Sbjct: 1340 ggcacgaagctggcctgtgaataagtgtaact 1371
>emb|CR387992.11| Zebrafish DNA sequence from clone DKEY-234K24 in linkage group 1, complete sequence Length = 76732 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Plus Query: 34 taagtgcaactctgttgatgtatcat 59 |||||||||||||||||||| ||||| Sbjct: 3586 taagtgcaactctgttgatgaatcat 3611
>ref|NM_012985.1| Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5 (Ndufa5), mRNA Length = 553 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 tgtctgatgatggatgtggat 196 ||||||||||||||||||||| Sbjct: 503 tgtctgatgatggatgtggat 523
>gb|DQ026069.2| Cephaloleia tenella voucher 004 contains cytochrome oxidase subunit I, tRNA-Leu and cytochrome oxidase subunit II genomic sequence; mitochondrial Length = 1692 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgatg 187 ||||||||||||||||||||| Sbjct: 334 cctctttcttgtctgatgatg 314
>gb|AY253089.1| Cyphopelta modesta cytochrome oxidase subunit I gene, partial cds; mitochondrial Length = 1060 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgatg 187 ||||||||||||||||||||| Sbjct: 723 cctctttcttgtctgatgatg 703
>gb|AY253074.1| Irbisia brachycera cytochrome oxidase subunit I-like gene, partial sequence; mitochondrial Length = 1036 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgatg 187 ||||||||||||||||||||| Sbjct: 699 cctctttcttgtctgatgatg 679
>gb|AC125460.4| Mus musculus BAC clone RP24-448D10 from chromosome 15, complete sequence Length = 205859 Score = 42.1 bits (21), Expect = 0.69 Identities = 27/29 (93%) Strand = Plus / Minus Query: 70 tgtggcggatagcctcaactctcttatgc 98 |||||||||||| ||||||||||| |||| Sbjct: 111551 tgtggcggatagactcaactctctcatgc 111523
>gb|AF444068.1| Coccotrypes advena isolate Scd36 cytochrome oxidase subunit I (CO1) gene, partial cds; mitochondrial gene for mitochondrial product Length = 1191 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgatg 187 ||||||||||||||||||||| Sbjct: 518 cctctttcttgtctgatgatg 498
>dbj|AK134728.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330539I22 product:contactin 1, full insert sequence Length = 1740 Score = 42.1 bits (21), Expect = 0.69 Identities = 27/29 (93%) Strand = Plus / Plus Query: 70 tgtggcggatagcctcaactctcttatgc 98 |||||||||||| ||||||||||| |||| Sbjct: 1386 tgtggcggatagactcaactctctcatgc 1414
>gb|AF375308.1| Coccotrypes cardamomi cytochrome oxidase I (CO1) gene, partial cds; mitochondrial gene for mitochondrial product Length = 1236 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgatg 187 ||||||||||||||||||||| Sbjct: 537 cctctttcttgtctgatgatg 517
>dbj|AK140433.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN full-length enriched library, clone:B830008A22 product:contactin 1, full insert sequence Length = 1628 Score = 42.1 bits (21), Expect = 0.69 Identities = 27/29 (93%) Strand = Plus / Plus Query: 70 tgtggcggatagcctcaactctcttatgc 98 |||||||||||| ||||||||||| |||| Sbjct: 1274 tgtggcggatagactcaactctctcatgc 1302
>gb|BC059148.1| Rattus norvegicus NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5, mRNA (cDNA clone MGC:72911 IMAGE:6919202), complete cds Length = 448 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 tgtctgatgatggatgtggat 196 ||||||||||||||||||||| Sbjct: 366 tgtctgatgatggatgtggat 386
>dbj|AK045710.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230306O09 product:contactin 1, full insert sequence Length = 3009 Score = 42.1 bits (21), Expect = 0.69 Identities = 27/29 (93%) Strand = Plus / Plus Query: 70 tgtggcggatagcctcaactctcttatgc 98 |||||||||||| ||||||||||| |||| Sbjct: 2636 tgtggcggatagactcaactctctcatgc 2664
>dbj|AK004399.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110067L24 product:contactin 1, full insert sequence Length = 1439 Score = 42.1 bits (21), Expect = 0.69 Identities = 27/29 (93%) Strand = Plus / Plus Query: 70 tgtggcggatagcctcaactctcttatgc 98 |||||||||||| ||||||||||| |||| Sbjct: 1272 tgtggcggatagactcaactctctcatgc 1300
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 gatgatggatgtggatttgac 201 ||||||||||||||||||||| Sbjct: 1098308 gatgatggatgtggatttgac 1098328
>gb|AF200255.2| Aquarius conformis cytochrome oxidase subunit I, tRNA-Leu, and cytochrome oxidase subunit II gene, partial sequence; mitochondrial Length = 1346 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgatg 187 ||||||||||||||||||||| Sbjct: 68 cctctttcttgtctgatgatg 48
>gb|AF200254.2| Aquarius nebularis cytochrome oxidase subunit I, tRNA-Leu, and cytochrome oxidase subunit II gene, partial sequence; mitochondrial Length = 1323 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgatg 187 ||||||||||||||||||||| Sbjct: 68 cctctttcttgtctgatgatg 48
>emb|AJ438085.1|TAN438085 Tribolium anaphe partial mitochondrial COI gene for cytochrome oxidase subunit I, haplotype 4 Length = 644 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgatg 187 ||||||||||||||||||||| Sbjct: 165 cctctttcttgtctgatgatg 145
>emb|AJ438084.1|TAN438084 Tribolium anaphe partial mitochondrial COI gene for cytochrome oxidase subunit I, haplotype 2 Length = 644 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgatg 187 ||||||||||||||||||||| Sbjct: 165 cctctttcttgtctgatgatg 145
>emb|AJ438083.1|TAN438083 Tribolium anaphe partial mitochondrial COI gene for cytochrome oxidase subunit I, haplotype 1 Length = 644 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgatg 187 ||||||||||||||||||||| Sbjct: 165 cctctttcttgtctgatgatg 145
>emb|AJ438063.1|TAN438063 Tribolium anaphe partial mitochondrial COI gene for cytochrome oxidase subunit I, haplotype 4 Length = 644 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgatg 187 ||||||||||||||||||||| Sbjct: 165 cctctttcttgtctgatgatg 145
>emb|AJ438062.1|TAN438062 Tribolium anaphe partial mitochondrial COI gene for cytochrome oxidase subunit I, haplotype 2 Length = 644 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgatg 187 ||||||||||||||||||||| Sbjct: 165 cctctttcttgtctgatgatg 145
>emb|AJ438061.1|TAN438061 Tribolium anaphe partial mitochondrial COI gene for cytochrome oxidase subunit I, haplotype 1 Length = 644 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgatg 187 ||||||||||||||||||||| Sbjct: 165 cctctttcttgtctgatgatg 145
>emb|AL732403.9| Mouse DNA sequence from clone RP23-119L20 on chromosome 2, complete sequence Length = 211892 Score = 42.1 bits (21), Expect = 0.69 Identities = 24/25 (96%) Strand = Plus / Minus Query: 171 tttcttgtctgatgatggatgtgga 195 |||||||||| |||||||||||||| Sbjct: 192668 tttcttgtctaatgatggatgtgga 192644
>dbj|D86215.1|RATNADHUO Rattus norvegicus mRNA for NADH:ubiquinone oxidoreductase, complete cds Length = 553 Score = 42.1 bits (21), Expect = 0.69 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 tgtctgatgatggatgtggat 196 ||||||||||||||||||||| Sbjct: 503 tgtctgatgatggatgtggat 523
>gb|DQ231171.1| Aquarius najas isolate 488 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 777 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 713 cctctttcttgtctgatgat 732
>gb|AC154650.2| Mus musculus BAC clone RP23-162K2 from chromosome 17, complete sequence Length = 210417 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 tttcttgtctgatgatggatgtgg 194 ||||||| |||||||||||||||| Sbjct: 129307 tttcttgactgatgatggatgtgg 129330
>gb|AY857642.1| Stictopleurus subviridis cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 383 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 51 cctctttcttgtctgatgat 32
>gb|AY627340.1| Leptocorisa acuta cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 397 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 41 cctctttcttgtctgatgat 22
>gb|AY627336.1| Mictis fuscipes cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 429 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 56 cctctttcttgtctgatgat 37
>gb|DQ026160.2| Alurnus ornatus voucher 165 cytochrome oxidase subunit I gene, partial cds; mitochondrial Length = 1208 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 473 cctctttcttgtctgatgat 454
>gb|AY253094.1| Slaterocoris sp. WCW-2003k cytochrome oxidase subunit I gene, partial cds; mitochondrial Length = 774 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 722 cctctttcttgtctgatgat 703
>gb|AY253085.1| Slaterocoris croceipes cytochrome oxidase subunit I gene, partial cds; mitochondrial Length = 1060 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 722 cctctttcttgtctgatgat 703
>gb|AY253023.1| Slaterocoris sp. WCW-2003j cytochrome oxidase subunit I gene, partial cds; mitochondrial Length = 776 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 728 cctctttcttgtctgatgat 709
>gb|AY252928.1| Mcateella sp. WCW-2003f cytochrome oxidase subunit I-like gene, partial sequence; mitochondrial Length = 1052 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 727 cctctttcttgtctgatgat 708
>gb|AY974095.1| Pityophthorus setosus cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 794 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 60 cctctttcttgtctgatgat 41
>gb|AF444055.1| Coccotrypes cf. rhizophorae cytochrome oxidase subunit I (CO1) gene, partial cds; mitochondrial gene for mitochondrial product Length = 1206 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 518 cctctttcttgtctgatgat 499
>gb|AF187142.1| Xyleborus sphenos cytochrome oxidase I gene, partial cds; mitochondrial gene for mitochondrial product Length = 1179 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 515 cctctttcttgtctgatgat 496
>emb|BX510325.3| Zebrafish DNA sequence from clone CH211-149A22 in linkage group 19, complete sequence Length = 147275 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 attgtgtgtgtggcggatag 81 |||||||||||||||||||| Sbjct: 3236 attgtgtgtgtggcggatag 3255
>gb|AC092480.27| Mus musculus strain C57BL/6J chromosome 17 clone rp23-387f2, complete sequence Length = 213144 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 tttcttgtctgatgatggatgtgg 194 ||||||| |||||||||||||||| Sbjct: 141184 tttcttgactgatgatggatgtgg 141207
>dbj|AB047575.1| Leptocarabus kyushuensis mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, country:Japan:Nagasaki, Obama Length = 1036 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 754 cctctttcttgtctgatgat 735
>dbj|AB047574.1| Leptocarabus kyushuensis mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, country:Japan:Nagasaki, Kunimi Length = 1036 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 754 cctctttcttgtctgatgat 735
>dbj|AB047573.1| Leptocarabus kyushuensis mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, country:Japan:Yamaguchi, Fukue Length = 1036 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 754 cctctttcttgtctgatgat 735
>dbj|AB047572.1| Leptocarabus hiurai mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, country:Japan:Tokushima, Higashi-iyayama Length = 1036 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 754 cctctttcttgtctgatgat 735
>dbj|AB047571.1| Leptocarabus hiurai mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, country:Japan:Ehime, Hojo Length = 1036 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 754 cctctttcttgtctgatgat 735
>dbj|AB047570.1| Leptocarabus kumagaii mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, country:Japan: Osaka, Hiragata Length = 1036 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 754 cctctttcttgtctgatgat 735
>dbj|AB047569.1| Leptocarabus kumagaii mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, country:Japan:Gifu, Takayama Length = 1036 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 754 cctctttcttgtctgatgat 735
>dbj|AB047568.1| Leptocarabus procerulus mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, country:Japan:Fukuoka, Mt.Hikosan Length = 1036 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 754 cctctttcttgtctgatgat 735
>dbj|AB047567.1| Leptocarabus procerulus mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, country:Japan:Ishikawa, Mt.Hakusan Length = 1036 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 754 cctctttcttgtctgatgat 735
>dbj|AB047566.1| Leptocarabus procerulus mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, country:Japan:Yamagata, Murayama Length = 1036 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 754 cctctttcttgtctgatgat 735
>dbj|AB047565.1| Leptocarabus arboreus mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, country:Japan:Ishikawa, Mt.Hakusan Length = 1036 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 754 cctctttcttgtctgatgat 735
>dbj|AB047564.1| Leptocarabus arboreus mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, country:Japan:Nagano, Fujimi Length = 1036 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 754 cctctttcttgtctgatgat 735
>dbj|AB047563.1| Leptocarabus arboreus mitochondrial COI gene for cytochrome oxidase subunit I, partial cds, country:Japan:Hokkaido, Fukushima Length = 1036 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 cctctttcttgtctgatgat 186 |||||||||||||||||||| Sbjct: 754 cctctttcttgtctgatgat 735 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,120,729 Number of Sequences: 3902068 Number of extensions: 2120729 Number of successful extensions: 168667 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 168525 Number of HSP's gapped (non-prelim): 142 length of query: 214 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 192 effective length of database: 17,147,199,772 effective search space: 3292262356224 effective search space used: 3292262356224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
