ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal37d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 133 6e-28
2dbj|AP005807.3| Oryza sativa (japonica cultivar-group) genomic D... 133 6e-28
3ref|NM_101250.2| Arabidopsis thaliana catalytic/ hydrolase AT1G1... 54 4e-04
4gb|BT014841.1| Arabidopsis thaliana At1g13820 gene, complete cds 54 4e-04
5gb|BT012536.1| Arabidopsis thaliana At1g13820 gene, complete cds 54 4e-04
6gb|AC068197.4|AC068197 Genomic sequence for Arabidopsis thaliana... 54 4e-04
7emb|CT027665.2| Medicago truncatula chromosome 5 clone mth2-69e1... 52 0.002
8dbj|AK062687.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
9gb|AC155714.6| Mus musculus 10 BAC RP24-165I13 (Roswell Park Can... 44 0.40
10dbj|AP006081.1| Lotus japonicus genomic DNA, chromosome 2, clone... 44 0.40
11ref|XM_479057.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
12gb|AC113097.11| Mus musculus chromosome 18, clone RP23-314E8, co... 42 1.6
13gb|AY611574.1| Notiosorex cockrumi isolate TK90851 cytochrome b ... 42 1.6
14gb|AY611572.1| Notiosorex cockrumi isolate MVZFC2653 cytochrome ... 42 1.6
15gb|AY611567.1| Notiosorex cockrumi isolate MVZFC2652 cytochrome ... 42 1.6
16gb|AY611565.1| Notiosorex cockrumi isolate TK90849 cytochrome b ... 42 1.6
17emb|BX323819.9| Zebrafish DNA sequence from clone CH211-132F19 i... 42 1.6
18gb|AC113092.25| Mus musculus chromosome 6, clone RP23-309N11, co... 40 6.2
19ref|XM_458092.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 6.2
20gb|AC138318.7| Mus musculus chromosome 3, clone RP23-358I23, com... 40 6.2
21gb|AC122289.2| Mus musculus BAC clone RP23-254F12 from 3, comple... 40 6.2
22gb|AC110221.6| Mus musculus chromosome 3, clone RP24-567P14, com... 40 6.2
23emb|AL022323.7|HS243E7 Human DNA sequence from clone CTA-243E7 o... 40 6.2
24emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 40 6.2
25emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS... 40 6.2
26gb|AC106789.2| Homo sapiens chromosome 5 clone RP11-371M22, comp... 40 6.2
27dbj|AK140984.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 6.2
28gb|AC154530.2| Mus musculus BAC clone RP23-467F17 from chromosom... 40 6.2
29dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 6.2
30gb|AC158638.15| Mus musculus 10 BAC RP24-117O6 (Roswell Park Can... 40 6.2
31emb|AL591967.11| Mouse DNA sequence from clone RP23-143E11 on ch... 40 6.2 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  133 bits (67), Expect = 6e-28
 Identities = 94/103 (91%)
 Strand = Plus / Minus

                                                                            
Query: 186      ttcagattggccgtctacactgcctgcttccttggtgggaagatgctactgttaatttta 245
                ||||||||||||||||||||||||| |||||||||||||||||||||  |||| ||||||
Sbjct: 24527958 ttcagattggccgtctacactgcctacttccttggtgggaagatgctcttgttgatttta 24527899

                                                           
Query: 246      tgatcactggaggttataatgtcctaaatcaaataaagcaggt 288
                |||| | ||| ||||||||||||||||| |||||||| |||||
Sbjct: 24527898 tgatgaatgggggttataatgtcctaaaccaaataaatcaggt 24527856



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                            
Query: 33       gtgcaagtgtgtatgctgagggcacaaaagatatgaccagaatgcctaaatttgttccat 92
                |||||||||| |||||||||||||||| ||||||||| |||||||||| ||| |||||||
Sbjct: 24528797 gtgcaagtgtatatgctgagggcacaagagatatgacaagaatgcctagattcgttccat 24528738

                          
Query: 93       atgctggggt 102
                ||||||||||
Sbjct: 24528737 atgctggggt 24528728



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                            
Query: 284      caggtaaagcaaaaatgcctggtattatggggagaggacgatggaataattagcaataag 343
                ||||||||||| ||||||||| | |||||||||||||| |||||||| |||||||| || 
Sbjct: 24527509 caggtaaagcataaatgcctgattttatggggagaggaggatggaatcattagcaacaaa 24527450

                         
Query: 344      caagcatat 352
                |||||||||
Sbjct: 24527449 caagcatat 24527441



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                     
Query: 377      gcaattttaaggcaggtagggcagtgcggccacattccccatgtcgagaagcc 429
                |||||||||||||||||| || |||| || || ||||| ||||| || |||||
Sbjct: 24527202 gcaattttaaggcaggtacgggagtgtggtcatattcctcatgttgaaaagcc 24527150
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>dbj|AP005807.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0018H10
          Length = 135879

 Score =  133 bits (67), Expect = 6e-28
 Identities = 94/103 (91%)
 Strand = Plus / Minus

                                                                         
Query: 186   ttcagattggccgtctacactgcctgcttccttggtgggaagatgctactgttaatttta 245
             ||||||||||||||||||||||||| |||||||||||||||||||||  |||| ||||||
Sbjct: 21252 ttcagattggccgtctacactgcctacttccttggtgggaagatgctcttgttgatttta 21193

                                                        
Query: 246   tgatcactggaggttataatgtcctaaatcaaataaagcaggt 288
             |||| | ||| ||||||||||||||||| |||||||| |||||
Sbjct: 21192 tgatgaatgggggttataatgtcctaaaccaaataaatcaggt 21150



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                         
Query: 33    gtgcaagtgtgtatgctgagggcacaaaagatatgaccagaatgcctaaatttgttccat 92
             |||||||||| |||||||||||||||| ||||||||| |||||||||| ||| |||||||
Sbjct: 22091 gtgcaagtgtatatgctgagggcacaagagatatgacaagaatgcctagattcgttccat 22032

                       
Query: 93    atgctggggt 102
             ||||||||||
Sbjct: 22031 atgctggggt 22022



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                         
Query: 284   caggtaaagcaaaaatgcctggtattatggggagaggacgatggaataattagcaataag 343
             ||||||||||| ||||||||| | |||||||||||||| |||||||| |||||||| || 
Sbjct: 20803 caggtaaagcataaatgcctgattttatggggagaggaggatggaatcattagcaacaaa 20744

                      
Query: 344   caagcatat 352
             |||||||||
Sbjct: 20743 caagcatat 20735



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 377   gcaattttaaggcaggtagggcagtgcggccacattccccatgtcgagaagcc 429
             |||||||||||||||||| || |||| || || ||||| ||||| || |||||
Sbjct: 20496 gcaattttaaggcaggtacgggagtgtggtcatattcctcatgttgaaaagcc 20444
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>ref|NM_101250.2| Arabidopsis thaliana catalytic/ hydrolase AT1G13820 mRNA, complete
           cds
          Length = 1282

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 214 tccttggtgggaagatgctactgttaattttatga 248
           |||||||||||||||||| ||||||| ||||||||
Sbjct: 804 tccttggtgggaagatgcaactgttagttttatga 838
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>gb|BT014841.1| Arabidopsis thaliana At1g13820 gene, complete cds
          Length = 1020

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 214 tccttggtgggaagatgctactgttaattttatga 248
           |||||||||||||||||| ||||||| ||||||||
Sbjct: 729 tccttggtgggaagatgcaactgttagttttatga 763
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>gb|BT012536.1| Arabidopsis thaliana At1g13820 gene, complete cds
          Length = 1247

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 214 tccttggtgggaagatgctactgttaattttatga 248
           |||||||||||||||||| ||||||| ||||||||
Sbjct: 790 tccttggtgggaagatgcaactgttagttttatga 824
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>gb|AC068197.4|AC068197 Genomic sequence for Arabidopsis thaliana BAC F16A14 from chromosome I,
             complete sequence
          Length = 99547

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 214   tccttggtgggaagatgctactgttaattttatga 248
             |||||||||||||||||| ||||||| ||||||||
Sbjct: 12420 tccttggtgggaagatgcaactgttagttttatga 12454
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>emb|CT027665.2| Medicago truncatula chromosome 5 clone mth2-69e15, COMPLETE SEQUENCE
          Length = 130069

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 215   ccttggtgggaagatgctactgttaattttatga 248
             ||||||||||| |||||||||||| |||||||||
Sbjct: 61748 ccttggtgggatgatgctactgttgattttatga 61715
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>dbj|AK062687.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-H11, full
           insert sequence
          Length = 620

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                       
Query: 344 caagcatatcggttacagcaggaactccccagcgcaattttaaggcaggtagggcagtgc 403
           ||||||||| |||| || |||||||||||    |||||||||||||||||| || |||| 
Sbjct: 1   caagcatataggttgcaccaggaactcccagatgcaattttaaggcaggtacgggagtgt 60

                                     
Query: 404 ggccacattccccatgtcgagaagcc 429
           || || ||||| ||||| || |||||
Sbjct: 61  ggtcatattcctcatgttgaaaagcc 86
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>gb|AC155714.6| Mus musculus 10 BAC RP24-165I13 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 167195

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 270   taaatcaaataaagcaggtaaa 291
             ||||||||||||||||||||||
Sbjct: 73953 taaatcaaataaagcaggtaaa 73932
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>dbj|AP006081.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT32P24, TM0120,
             complete sequence
          Length = 137804

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 215   ccttggtgggaagatgctactgttaattttatga 248
             ||||||||||| |||||||||||  |||||||||
Sbjct: 34908 ccttggtgggatgatgctactgtggattttatga 34875
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>ref|XM_479057.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 621

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 377 gcaattttaaggcaggtagggcagtgcggccacattccccatgtcgagaagcc 429
           |||||||||||||||||| || |||| || || ||||| ||||| || |||||
Sbjct: 35  gcaattttaaggcaggtacgggagtgtggtcatattcctcatgttgaaaagcc 87
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>gb|AC113097.11| Mus musculus chromosome 18, clone RP23-314E8, complete sequence
          Length = 172295

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 217    ttggtgggaagatgctactgt 237
              |||||||||||||||||||||
Sbjct: 141963 ttggtgggaagatgctactgt 141983
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>gb|AY611574.1| Notiosorex cockrumi isolate TK90851 cytochrome b gene, complete
           cds; mitochondrial
          Length = 1140

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 161 attccagatggattatttgat 181
           |||||||||||||||||||||
Sbjct: 632 attccagatggattatttgat 612
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>gb|AY611572.1| Notiosorex cockrumi isolate MVZFC2653 cytochrome b gene, complete
           cds; mitochondrial
          Length = 1140

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 161 attccagatggattatttgat 181
           |||||||||||||||||||||
Sbjct: 632 attccagatggattatttgat 612
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>gb|AY611567.1| Notiosorex cockrumi isolate MVZFC2652 cytochrome b gene, complete
           cds; mitochondrial
          Length = 1140

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 161 attccagatggattatttgat 181
           |||||||||||||||||||||
Sbjct: 632 attccagatggattatttgat 612
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>gb|AY611565.1| Notiosorex cockrumi isolate TK90849 cytochrome b gene, complete
           cds; mitochondrial
          Length = 1140

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 161 attccagatggattatttgat 181
           |||||||||||||||||||||
Sbjct: 632 attccagatggattatttgat 612
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>emb|BX323819.9| Zebrafish DNA sequence from clone CH211-132F19 in linkage group 17,
              complete sequence
          Length = 178951

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 67     gaccagaatgcctaaatttgt 87
              |||||||||||||||||||||
Sbjct: 127629 gaccagaatgcctaaatttgt 127649
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>gb|AC113092.25| Mus musculus chromosome 6, clone RP23-309N11, complete sequence
          Length = 186431

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   aaagcaaaaatgcctggtat 308
             ||||||||||||||||||||
Sbjct: 67228 aaagcaaaaatgcctggtat 67209
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>ref|XM_458092.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0C10417g)
            partial mRNA
          Length = 2598

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 57   caaaagatatgaccagaatg 76
            ||||||||||||||||||||
Sbjct: 2433 caaaagatatgaccagaatg 2452
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>gb|AC138318.7| Mus musculus chromosome 3, clone RP23-358I23, complete sequence
          Length = 201126

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 262  taatgtcctaaatcaaataa 281
            ||||||||||||||||||||
Sbjct: 7518 taatgtcctaaatcaaataa 7537
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>gb|AC122289.2| Mus musculus BAC clone RP23-254F12 from 3, complete sequence
          Length = 210708

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    taatgtcctaaatcaaataa 281
              ||||||||||||||||||||
Sbjct: 206632 taatgtcctaaatcaaataa 206651
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>gb|AC110221.6| Mus musculus chromosome 3, clone RP24-567P14, complete sequence
          Length = 138203

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 289    aaagcaaaaatgcctggtat 308
              ||||||||||||||||||||
Sbjct: 113299 aaagcaaaaatgcctggtat 113280
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>emb|AL022323.7|HS243E7 Human DNA sequence from clone CTA-243E7 on chromosome 22q12.1, complete
              sequence
          Length = 183113

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 199    tctacactgcctgcttccttggtg 222
              |||||||| |||||||||||||||
Sbjct: 159831 tctacactccctgcttccttggtg 159854
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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 342     agcaagcatatcggttacag 361
               ||||||||||||||||||||
Sbjct: 1965768 agcaagcatatcggttacag 1965749
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>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces
              hansenii
          Length = 1592360

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     caaaagatatgaccagaatg 76
              ||||||||||||||||||||
Sbjct: 868654 caaaagatatgaccagaatg 868635
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>gb|AC106789.2| Homo sapiens chromosome 5 clone RP11-371M22, complete sequence
          Length = 115165

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     gtatgctgagggcacaaaag 62
              ||||||||||||||||||||
Sbjct: 107203 gtatgctgagggcacaaaag 107184
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>dbj|AK140984.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130090L17 product:unclassifiable, full
            insert sequence
          Length = 2488

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 289  aaagcaaaaatgcctggtat 308
            ||||||||||||||||||||
Sbjct: 1187 aaagcaaaaatgcctggtat 1206
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>gb|AC154530.2| Mus musculus BAC clone RP23-467F17 from chromosome 16, complete
             sequence
          Length = 179995

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 66    tgaccagaatgcctaaatttgttccata 93
             ||||||||||||||| |||||| |||||
Sbjct: 55092 tgaccagaatgcctagatttgtaccata 55119
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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 342     agcaagcatatcggttacag 361
               ||||||||||||||||||||
Sbjct: 1949003 agcaagcatatcggttacag 1948984
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>gb|AC158638.15| Mus musculus 10 BAC RP24-117O6 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 185145

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   aatgtcctaaatcaaataaa 282
             ||||||||||||||||||||
Sbjct: 15365 aatgtcctaaatcaaataaa 15346
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>emb|AL591967.11| Mouse DNA sequence from clone RP23-143E11 on chromosome 2, complete
             sequence
          Length = 124280

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 264   atgtcctaaatcaaataaag 283
             ||||||||||||||||||||
Sbjct: 76314 atgtcctaaatcaaataaag 76333


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,259,635
Number of Sequences: 3902068
Number of extensions: 4259635
Number of successful extensions: 77398
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77257
Number of HSP's gapped (non-prelim): 140
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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