ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal37a20 |
|---|---|
| Clone Library Name | barley_pub |
>IMP3_YEAST (P32899) U3 small nucleolar ribonucleoprotein protein IMP3 (U3| snoRNP protein IMP3) Length = 183 Score = 118 bits (296), Expect = 8e-27 Identities = 61/122 (50%), Positives = 83/122 (68%), Gaps = 1/122 (0%) Frame = +1 Query: 148 MMRKLKFHERKLLKKTNFLLWKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNI 327 M+RKLK HE+KLLKK +FL WK++ GHR+ V + Y + +R+DY KYN IC ++L N Sbjct: 1 MVRKLKHHEQKLLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANK 60 Query: 328 IKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCE-RLSVSAFARRRLATIMVKLKF 504 + + P DPFR + +LLDKLY MGV+ TK + E +++VSA RRRL IM +LK Sbjct: 61 LSLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKM 120 Query: 505 AE 510 AE Sbjct: 121 AE 122
>IMP3_MOUSE (Q921Y2) U3 small nucleolar ribonucleoprotein protein IMP3 (U3| snoRNP protein IMP3) Length = 184 Score = 116 bits (290), Expect = 4e-26 Identities = 56/124 (45%), Positives = 85/124 (68%), Gaps = 1/124 (0%) Frame = +1 Query: 148 MMRKLKFHERKLLKKTNFLLWK-REGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVN 324 M+RKLKFHE+KLLK+ +FL W+ + E V +RY L R++Y +YN + ++L Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELAR 60 Query: 325 IIKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKF 504 ++ + RDPFR+ + LLDKLY MG++PT+ SL C+ +S S+F RRRL T+++KL+ Sbjct: 61 RLRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRM 120 Query: 505 AEHL 516 A+HL Sbjct: 121 AQHL 124
>IMP3_BOVIN (Q3T0M3) U3 small nucleolar ribonucleoprotein protein IMP3 (U3| snoRNP protein IMP3) Length = 184 Score = 112 bits (281), Expect = 5e-25 Identities = 54/124 (43%), Positives = 84/124 (67%), Gaps = 1/124 (0%) Frame = +1 Query: 148 MMRKLKFHERKLLKKTNFLLWK-REGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVN 324 M+RKLKFHE+KLLK+ +FL W+ + E V +RY L R+DY +YN + ++L Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60 Query: 325 IIKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKF 504 ++ + RDPFR+ + LLDKLY +G++PT+ S C+ ++ S+F RRRL T+++KL+ Sbjct: 61 RLRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRM 120 Query: 505 AEHL 516 A+HL Sbjct: 121 AQHL 124
>IMP3_HUMAN (Q9NV31) U3 small nucleolar ribonucleoprotein protein IMP3 (U3| snoRNP protein IMP3) (BRMS2) Length = 184 Score = 112 bits (279), Expect = 8e-25 Identities = 54/124 (43%), Positives = 84/124 (67%), Gaps = 1/124 (0%) Frame = +1 Query: 148 MMRKLKFHERKLLKKTNFLLWK-REGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVN 324 M+RKLKFHE+KLLK+ +FL W+ + E V +RY L R+DY +YN + ++L Sbjct: 1 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR 60 Query: 325 IIKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKF 504 ++ + RD FR+ + LLDKLY +G++PT+ SL C+ ++ S+F RRRL T+++KL+ Sbjct: 61 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM 120 Query: 505 AEHL 516 A+HL Sbjct: 121 AQHL 124
>IMP3_SCHPO (O13835) U3 small nucleolar ribonucleoprotein protein imp3 (U3| snoRNP protein imp3) Length = 183 Score = 105 bits (262), Expect = 7e-23 Identities = 52/122 (42%), Positives = 83/122 (68%), Gaps = 2/122 (1%) Frame = +1 Query: 151 MRKLKFHERKLLKKTNFLLWKRE-GGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNI 327 MR LK HE+KLL+K +FL +K + HR+ V +RY + R++Y+KYN IC ++L + Sbjct: 1 MRILKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHR 60 Query: 328 IKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCE-RLSVSAFARRRLATIMVKLKF 504 + +DP DPFR++ +LL+KL++MG++P+K + E + +VSA RRRL IM KL+ Sbjct: 61 LSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRM 120 Query: 505 AE 510 ++ Sbjct: 121 SQ 122
>YS4L_CAEEL (O01513) Putative 40S ribosomal protein S4-like| Length = 183 Score = 89.7 bits (221), Expect = 4e-18 Identities = 42/121 (34%), Positives = 76/121 (62%) Frame = +1 Query: 148 MMRKLKFHERKLLKKTNFLLWKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNI 327 M+RKLK HE+KLLKKT+F+ W+ + ++ + +++ + R+ Y YN + S+++ ++ Sbjct: 1 MVRKLKTHEQKLLKKTDFMSWQVDQQGKQGDMLRKFYVKKREHYALYNTLAAKSREVADL 60 Query: 328 IKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVKLKFA 507 IK + DPFR + T +L K Y G++PT +L + +++ ++FARRRL +M + Sbjct: 61 IKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGKVTGASFARRRLPVVMRNIGMC 120 Query: 508 E 510 E Sbjct: 121 E 121
>YS4L_PNECA (Q01688) Putative 40S ribosomal protein S4-like (Fragment)| Length = 169 Score = 89.7 bits (221), Expect = 4e-18 Identities = 50/122 (40%), Positives = 75/122 (61%), Gaps = 2/122 (1%) Frame = +1 Query: 151 MRKLKFHERKLLKKTNFLLWKRE-GGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNI 327 MRKLK+HE+KLL K +FL +K++ HR+ V +RY + R+DY KYN + + + N Sbjct: 1 MRKLKYHEKKLLTKHDFLNYKKDDNNHRDVNVIRRYHIPQREDYFKYNQLVGLLLGIANK 60 Query: 328 IKQMDPRDPFRIEMTGMLLDKLYNMGVIPTKKSLVKCE-RLSVSAFARRRLATIMVKLKF 504 + ++P D F MLL KL++M ++ + L E +L+VSAF RRRL +M +LK Sbjct: 61 LSLLEPTDSFGNLHKKMLLGKLFDMALLTSTPKLSDVENKLTVSAFCRRRLPVVMCRLKM 120 Query: 505 AE 510 E Sbjct: 121 CE 122
>RS9_ENTHI (O15612) 40S ribosomal protein S9 (Fragment)| Length = 144 Score = 35.4 bits (80), Expect = 0.093 Identities = 22/110 (20%), Positives = 55/110 (50%), Gaps = 1/110 (0%) Frame = +1 Query: 190 KTNFLLWKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEM 369 KT + ++RE E + ++ L ++ + ++ + + + + ++ D +DP R+ Sbjct: 9 KTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPKRLLE 68 Query: 370 TGMLLDKLYNMGVIPTKKSLVK-CERLSVSAFARRRLATIMVKLKFAEHL 516 LL +L+N+G++P ++ ++ L RRL T++ + F + + Sbjct: 69 GAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFGKSI 118
>RS9_DICDI (P14132) 40S ribosomal protein S9 (40S ribosomal protein 1024)| (Vegetative-specific protein V12) Length = 185 Score = 34.3 bits (77), Expect = 0.21 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 1/104 (0%) Frame = +1 Query: 208 WKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLD 387 +++E E V + L ++++ + +K + +D +DP RI LL Sbjct: 16 FEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDPKRIFEGSALLR 75 Query: 388 KLYNMGVI-PTKKSLVKCERLSVSAFARRRLATIMVKLKFAEHL 516 +L+ +GV+ +K L L V F RRL T++ K A+ + Sbjct: 76 RLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSI 119
>RS9_CAEEL (Q20228) 40S ribosomal protein S9| Length = 189 Score = 31.2 bits (69), Expect = 1.8 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 1/123 (0%) Frame = +1 Query: 151 MRKLKFHERKLLKKTNFLLWKREGGHREAAVTQRYSLVDRDDYKKYNGICLMSQKLVNII 330 M +LK + K+ K +++E +E + + L ++ + + +K + Sbjct: 1 MARLKTVQSKVTKSPR-RPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAAREL 59 Query: 331 KQMDPRDPFRIEMTGMLLDKLYNMGVI-PTKKSLVKCERLSVSAFARRRLATIMVKLKFA 507 ++ +DP R+ LL +L +GV+ TK L L V F RRL T + KL A Sbjct: 60 LTLEDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLA 119 Query: 508 EHL 516 + + Sbjct: 120 KSI 122
>RS9_RAT (P29314) 40S ribosomal protein S9| Length = 193 Score = 29.6 bits (65), Expect = 5.1 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Frame = +1 Query: 229 REAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGV 408 +E + Y L ++ + + +K + +D +DP R+ LL +L +GV Sbjct: 26 QELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGV 85 Query: 409 IPT-KKSLVKCERLSVSAFARRRLATIMVKLKFAEHL 516 + K L L + F RRL T + KL A+ + Sbjct: 86 LDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSI 122
>RS9_MOUSE (Q6ZWN5) 40S ribosomal protein S9| Length = 193 Score = 29.6 bits (65), Expect = 5.1 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Frame = +1 Query: 229 REAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGV 408 +E + Y L ++ + + +K + +D +DP R+ LL +L +GV Sbjct: 26 QELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGV 85 Query: 409 IPT-KKSLVKCERLSVSAFARRRLATIMVKLKFAEHL 516 + K L L + F RRL T + KL A+ + Sbjct: 86 LDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSI 122
>RS9_HUMAN (P46781) 40S ribosomal protein S9| Length = 193 Score = 29.6 bits (65), Expect = 5.1 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Frame = +1 Query: 229 REAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGV 408 +E + Y L ++ + + +K + +D +DP R+ LL +L +GV Sbjct: 26 QELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGV 85 Query: 409 IPT-KKSLVKCERLSVSAFARRRLATIMVKLKFAEHL 516 + K L L + F RRL T + KL A+ + Sbjct: 86 LDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSI 122
>ADA10_XENLA (Q8JIY1) ADAM 10 precursor (EC 3.4.24.81) (A disintegrin and| metalloproteinase domain 10) (Kuzbanian protein homolog) (xKuz) Length = 749 Score = 29.6 bits (65), Expect = 5.1 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 9/76 (11%) Frame = +1 Query: 178 KLLKKTNFLLWKREGGHREAAVTQRYS-------LVDRDDYKKYNGICLMSQKL-VNIIK 333 +L +T+ L +KR G REA + Q S + D+ I M +++ +N+ Sbjct: 223 QLFIQTDHLFYKRYGETREAVIAQISSHVKAIDTIYQSTDFSGIRNISFMVKRIRINVTS 282 Query: 334 -QMDPRDPFRIEMTGM 378 + DP +PFR G+ Sbjct: 283 DEKDPTNPFRFPNIGV 298
>RS4_ARCFU (O28000) 30S ribosomal protein S4P| Length = 172 Score = 28.9 bits (63), Expect = 8.7 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = +1 Query: 379 LLDKLYNMGVIPTKKSLVKCERLSVSAFARRRLATIMVK 495 ++ KL MG++P +L LSV F RRL T++ + Sbjct: 79 VIKKLNKMGILPENATLDDILNLSVEDFLERRLQTMVYR 117
>RS9_PIG (Q29197) 40S ribosomal protein S9 (Fragment)| Length = 130 Score = 28.9 bits (63), Expect = 8.7 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 1/94 (1%) Frame = +1 Query: 229 REAAVTQRYSLVDRDDYKKYNGICLMSQKLVNIIKQMDPRDPFRIEMTGMLLDKLYNMGV 408 +E + Y L ++ + + +K + +D +DP R+ LL +L +GV Sbjct: 25 QELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGV 84 Query: 409 IPT-KKSLVKCERLSVSAFARRRLATIMVKLKFA 507 + K L L + F RRL T + KL A Sbjct: 85 LDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA 118 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,830,568 Number of Sequences: 219361 Number of extensions: 724197 Number of successful extensions: 2466 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2432 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2458 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
