ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal36k01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473636.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 483 Score = 335 bits (169), Expect = 1e-88 Identities = 328/381 (86%) Strand = Plus / Plus Query: 111 ggaggcatcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccacccc 170 |||||||||||||||| |||||| || ||||||||||| |||||||||||||||||||| Sbjct: 13 ggaggcatcgcccgcgcccgcctcgccgaggagcgcaaggcgtggcgcaagaaccacccc 72 Query: 171 catggcttcgtggccaaaccggagaccctgccggatgggtccgtcaatctcatgctctgg 230 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| Sbjct: 73 catggcttcgtggccaagccggagaccctgccggatgggtccgtcaacctcatggtctgg 132 Query: 231 cggtgcgtcatccccggcaagccagggactgactgggagggtggatatttcccactaact 290 || ||| ||||||||||||| ||||||||| ||||||||||||||||||||||| ||| Sbjct: 133 cgatgcatcatccccggcaaagaagggactgattgggagggtggatatttcccacttact 192 Query: 291 ctgcaatttgatgataattacccaactaccgctcctagctgcaggtttccagcaggtttc 350 ||||||| ||| | || ||||| | ||||||| |||| ||| ||| | |||||| Sbjct: 193 atgcaattcactgaagactatccaaccaacgctccttcttgcaagttcccatcgggtttc 252 Query: 351 ttccatatcaatgtgtatgattcgggagcagtatgcctatcgatcctgggtgctgcatgg 410 ||||| |||||||| ||||| || || |||||||||||||| ||| || || | |||||| Sbjct: 253 ttccacatcaatgtctatgactctggggcagtatgcctatcaatcttgagtaccgcatgg 312 Query: 411 aaaccttcaattacagtgaagcagattttggtaggcatccaggagttgcttgatgacccg 470 ||||||||||||||||||| ||| ||| | ||||||||||||| ||| ||||||| || Sbjct: 313 aaaccttcaattacagtgaggcaaattcttataggcatccaggaattgtttgatgatcca 372 Query: 471 aatcctaactcggctgcacag 491 || |||||||| ||||||||| Sbjct: 373 aaccctaactctgctgcacag 393
>dbj|AK121581.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037C10, full insert sequence Length = 555 Score = 200 bits (101), Expect = 4e-48 Identities = 242/289 (83%) Strand = Plus / Plus Query: 203 ggatgggtccgtcaatctcatgctctggcggtgcgtcatccccggcaagccagggactga 262 ||||||||||||||| |||||| ||||||| ||| ||||||||||||| ||||||||| Sbjct: 2 ggatgggtccgtcaacctcatggtctggcgatgcatcatccccggcaaagaagggactga 61 Query: 263 ctgggagggtggatatttcccactaactctgcaatttgatgataattacccaactaccgc 322 ||||||||||||||||||||||| ||| ||||||| ||| | || ||||| | ||| Sbjct: 62 ttgggagggtggatatttcccacttactatgcaattcactgaagactatccaaccaacgc 121 Query: 323 tcctagctgcaggtttccagcaggtttcttccatatcaatgtgtatgattcgggagcagt 382 |||| |||| ||| ||| | ||||||||||| |||||||| ||||| || || ||||| Sbjct: 122 tccttcttgcaagttcccatcgggtttcttccacatcaatgtctatgactctggggcagt 181 Query: 383 atgcctatcgatcctgggtgctgcatggaaaccttcaattacagtgaagcagattttggt 442 ||||||||| ||| || || | ||||||||||||||||||||||||| ||| ||| | | Sbjct: 182 atgcctatcaatcttgagtaccgcatggaaaccttcaattacagtgaggcaaattcttat 241 Query: 443 aggcatccaggagttgcttgatgacccgaatcctaactcggctgcacag 491 |||||||||||| ||| ||||||| || || |||||||| ||||||||| Sbjct: 242 aggcatccaggaattgtttgatgatccaaaccctaactctgctgcacag 290
>gb|AY106327.1| Zea mays PCO142080 mRNA sequence Length = 1096 Score = 125 bits (63), Expect = 2e-25 Identities = 141/167 (84%) Strand = Plus / Plus Query: 117 atcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccacccccatggc 176 ||||||||||||||||| || ||||||||||| | ||||||||||||||||| || || Sbjct: 105 atcgcccgcggccgcctcgccgaggagcgcaaggcctggcgcaagaaccacccgcacggt 164 Query: 177 ttcgtggccaaaccggagaccctgccggatgggtccgtcaatctcatgctctggcggtgc 236 ||||| || || |||||| | ||||| || ||| | || || || ||| |||||| |||| Sbjct: 165 ttcgtcgcgaagccggagtcgctgcccgacgggacggtgaacctgatgatctggcagtgc 224 Query: 237 gtcatccccggcaagccagggactgactgggagggtggatatttccc 283 |||||||||||||| ||||||||||||||| |||||||||||||| Sbjct: 225 accatccccggcaagcaagggactgactgggaaggtggatatttccc 271
>emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23, complete sequence Length = 149892 Score = 113 bits (57), Expect = 7e-22 Identities = 72/77 (93%) Strand = Plus / Minus Query: 174 ggcttcgtggccaaaccggagaccctgccggatgggtccgtcaatctcatgctctggcgg 233 |||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| Sbjct: 68051 ggcttcgtggccaagccggagaccctgccggatgggtccgtcaacctcatggtctggcga 67992 Query: 234 tgcgtcatccccggcaa 250 ||| ||||||||||||| Sbjct: 67991 tgcatcatccccggcaa 67975 Score = 87.7 bits (44), Expect = 4e-14 Identities = 59/64 (92%) Strand = Plus / Minus Query: 111 ggaggcatcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccacccc 170 |||||||||||||||| |||||| || ||||||||||| |||||||||||||||||||| Sbjct: 68259 ggaggcatcgcccgcgcccgcctcgccgaggagcgcaaggcgtggcgcaagaaccacccc 68200 Query: 171 catg 174 |||| Sbjct: 68199 catg 68196 Score = 85.7 bits (43), Expect = 1e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 405 gcatggaaaccttcaattacagtgaagcagattttggtaggcatccaggagttgcttgat 464 ||||||||||||||||||||||||| ||| ||| | ||||||||||||| ||| ||||| Sbjct: 65955 gcatggaaaccttcaattacagtgaggcaaattcttataggcatccaggaattgtttgat 65896 Query: 465 gacccgaatcctaactcggctgcacag 491 || || || |||||||| ||||||||| Sbjct: 65895 gatccaaaccctaactctgctgcacag 65869 Score = 77.8 bits (39), Expect = 4e-11 Identities = 111/135 (82%) Strand = Plus / Minus Query: 257 gactgactgggagggtggatatttcccactaactctgcaatttgatgataattacccaac 316 |||||| ||||||||||||||||||||||| ||| ||||||| ||| | || ||||| Sbjct: 66188 gactgattgggagggtggatatttcccacttactatgcaattcactgaagactatccaac 66129 Query: 317 taccgctcctagctgcaggtttccagcaggtttcttccatatcaatgtgtatgattcggg 376 | ||||||| |||| ||| ||| | ||||||||||| |||||||| ||||| || || Sbjct: 66128 caacgctccttcttgcaagttcccatcgggtttcttccacatcaatgtctatgactctgg 66069 Query: 377 agcagtatgcctatc 391 |||||||||||||| Sbjct: 66068 ggcagtatgcctatc 66054
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 113 bits (57), Expect = 7e-22 Identities = 72/77 (93%) Strand = Plus / Minus Query: 174 ggcttcgtggccaaaccggagaccctgccggatgggtccgtcaatctcatgctctggcgg 233 |||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| Sbjct: 29265005 ggcttcgtggccaagccggagaccctgccggatgggtccgtcaacctcatggtctggcga 29264946 Query: 234 tgcgtcatccccggcaa 250 ||| ||||||||||||| Sbjct: 29264945 tgcatcatccccggcaa 29264929 Score = 87.7 bits (44), Expect = 4e-14 Identities = 59/64 (92%) Strand = Plus / Minus Query: 111 ggaggcatcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccacccc 170 |||||||||||||||| |||||| || ||||||||||| |||||||||||||||||||| Sbjct: 29265213 ggaggcatcgcccgcgcccgcctcgccgaggagcgcaaggcgtggcgcaagaaccacccc 29265154 Query: 171 catg 174 |||| Sbjct: 29265153 catg 29265150 Score = 85.7 bits (43), Expect = 1e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 405 gcatggaaaccttcaattacagtgaagcagattttggtaggcatccaggagttgcttgat 464 ||||||||||||||||||||||||| ||| ||| | ||||||||||||| ||| ||||| Sbjct: 29262909 gcatggaaaccttcaattacagtgaggcaaattcttataggcatccaggaattgtttgat 29262850 Query: 465 gacccgaatcctaactcggctgcacag 491 || || || |||||||| ||||||||| Sbjct: 29262849 gatccaaaccctaactctgctgcacag 29262823 Score = 77.8 bits (39), Expect = 4e-11 Identities = 111/135 (82%) Strand = Plus / Minus Query: 257 gactgactgggagggtggatatttcccactaactctgcaatttgatgataattacccaac 316 |||||| ||||||||||||||||||||||| ||| ||||||| ||| | || ||||| Sbjct: 29263142 gactgattgggagggtggatatttcccacttactatgcaattcactgaagactatccaac 29263083 Query: 317 taccgctcctagctgcaggtttccagcaggtttcttccatatcaatgtgtatgattcggg 376 | ||||||| |||| ||| ||| | ||||||||||| |||||||| ||||| || || Sbjct: 29263082 caacgctccttcttgcaagttcccatcgggtttcttccacatcaatgtctatgactctgg 29263023 Query: 377 agcagtatgcctatc 391 |||||||||||||| Sbjct: 29263022 ggcagtatgcctatc 29263008
>ref|XM_468586.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 483 Score = 97.6 bits (49), Expect = 4e-17 Identities = 133/161 (82%) Strand = Plus / Plus Query: 117 atcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccacccccatggc 176 ||||| ||||||||||| ||||||||||| || ||||||| ||||||||||| || || Sbjct: 13 atcgcgcgcggccgcctcgcggaggagcggaaggcgtggcggaagaaccacccacacggt 72 Query: 177 ttcgtggccaaaccggagaccctgccggatgggtccgtcaatctcatgctctggcggtgc 236 ||||| ||||| |||||||| || | || ||| | ||||| |||||| |||||| ||| Sbjct: 73 ttcgtcgccaagccggagacgttggccgacgggacggtcaacctcatgatctggcactgc 132 Query: 237 gtcatccccggcaagccagggactgactgggagggtggata 277 ||||||||||||| ||||||||| ||||| |||||||| Sbjct: 133 acaatccccggcaagcaagggactgattgggaaggtggata 173
>dbj|AK102397.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092H08, full insert sequence Length = 857 Score = 97.6 bits (49), Expect = 4e-17 Identities = 133/161 (82%) Strand = Plus / Plus Query: 117 atcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccacccccatggc 176 ||||| ||||||||||| ||||||||||| || ||||||| ||||||||||| || || Sbjct: 54 atcgcgcgcggccgcctcgcggaggagcggaaggcgtggcggaagaaccacccacacggt 113 Query: 177 ttcgtggccaaaccggagaccctgccggatgggtccgtcaatctcatgctctggcggtgc 236 ||||| ||||| |||||||| || | || ||| | ||||| |||||| |||||| ||| Sbjct: 114 ttcgtcgccaagccggagacgttggccgacgggacggtcaacctcatgatctggcactgc 173 Query: 237 gtcatccccggcaagccagggactgactgggagggtggata 277 ||||||||||||| ||||||||| ||||| |||||||| Sbjct: 174 acaatccccggcaagcaagggactgattgggaaggtggata 214
>dbj|AK062161.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B02, full insert sequence Length = 981 Score = 97.6 bits (49), Expect = 4e-17 Identities = 133/161 (82%) Strand = Plus / Plus Query: 117 atcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccacccccatggc 176 ||||| ||||||||||| ||||||||||| || ||||||| ||||||||||| || || Sbjct: 65 atcgcgcgcggccgcctcgcggaggagcggaaggcgtggcggaagaaccacccacacggt 124 Query: 177 ttcgtggccaaaccggagaccctgccggatgggtccgtcaatctcatgctctggcggtgc 236 ||||| ||||| |||||||| || | || ||| | ||||| |||||| |||||| ||| Sbjct: 125 ttcgtcgccaagccggagacgttggccgacgggacggtcaacctcatgatctggcactgc 184 Query: 237 gtcatccccggcaagccagggactgactgggagggtggata 277 ||||||||||||| ||||||||| ||||| |||||||| Sbjct: 185 acaatccccggcaagcaagggactgattgggaaggtggata 225
>gb|AY110981.1| Zea mays CL44238_1 mRNA sequence Length = 626 Score = 81.8 bits (41), Expect = 2e-12 Identities = 92/109 (84%) Strand = Plus / Minus Query: 175 gcttcgtggccaaaccggagaccctgccggatgggtccgtcaatctcatgctctggcggt 234 |||| |||||||| |||| || ||||||||||| || |||||||||||||||||| | Sbjct: 593 gctttgtggccaagccggcgatgctgccggatggttctgtcaatctcatgctctggaact 534 Query: 235 gcgtcatccccggcaagccagggactgactgggagggtggatatttccc 283 ||||| ||||||||||| ||| |||| ||||| |||||||||||||| Sbjct: 533 gcgtcgtccccggcaagaaaggccctgattgggaaggtggatatttccc 485
>ref|NM_197540.1| Oryza sativa (japonica cultivar-group) putative ubiquitin-conjugating enzyme (OSJNBb0060I05.2), mRNA Length = 742 Score = 79.8 bits (40), Expect = 9e-12 Identities = 133/164 (81%) Strand = Plus / Plus Query: 111 ggaggcatcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccacccc 170 ||||| ||||| ||||||||||| |||||||||||||| | ||||| ||||||||||| Sbjct: 7 ggagggatcgcacgcggccgcctcgcggaggagcgcaaggcctggcggaagaaccaccct 66 Query: 171 catggcttcgtggccaaaccggagaccctgccggatgggtccgtcaatctcatgctctgg 230 || || |||||||| || |||||||| || | || ||||| | || |||||| ||||| Sbjct: 67 cacgggttcgtggcgaagccggagacgatggccgacgggtcggcgaacctcatgatctgg 126 Query: 231 cggtgcgtcatccccggcaagccagggactgactgggagggtgg 274 | ||| |||||||||||||| ||||| || ||||| ||||| Sbjct: 127 cactgcaccatccccggcaagcaggggaccgattgggaaggtgg 170
>dbj|AK121221.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090H15, full insert sequence Length = 843 Score = 79.8 bits (40), Expect = 9e-12 Identities = 133/164 (81%) Strand = Plus / Plus Query: 111 ggaggcatcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccacccc 170 ||||| ||||| ||||||||||| |||||||||||||| | ||||| ||||||||||| Sbjct: 120 ggagggatcgcacgcggccgcctcgcggaggagcgcaaggcctggcggaagaaccaccct 179 Query: 171 catggcttcgtggccaaaccggagaccctgccggatgggtccgtcaatctcatgctctgg 230 || || |||||||| || |||||||| || | || ||||| | || |||||| ||||| Sbjct: 180 cacgggttcgtggcgaagccggagacgatggccgacgggtcggcgaacctcatgatctgg 239 Query: 231 cggtgcgtcatccccggcaagccagggactgactgggagggtgg 274 | ||| |||||||||||||| ||||| || ||||| ||||| Sbjct: 240 cactgcaccatccccggcaagcaggggaccgattgggaaggtgg 283
>dbj|AK105227.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-C09, full insert sequence Length = 809 Score = 79.8 bits (40), Expect = 9e-12 Identities = 133/164 (81%) Strand = Plus / Plus Query: 111 ggaggcatcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccacccc 170 ||||| ||||| ||||||||||| |||||||||||||| | ||||| ||||||||||| Sbjct: 74 ggagggatcgcacgcggccgcctcgcggaggagcgcaaggcctggcggaagaaccaccct 133 Query: 171 catggcttcgtggccaaaccggagaccctgccggatgggtccgtcaatctcatgctctgg 230 || || |||||||| || |||||||| || | || ||||| | || |||||| ||||| Sbjct: 134 cacgggttcgtggcgaagccggagacgatggccgacgggtcggcgaacctcatgatctgg 193 Query: 231 cggtgcgtcatccccggcaagccagggactgactgggagggtgg 274 | ||| |||||||||||||| ||||| || ||||| ||||| Sbjct: 194 cactgcaccatccccggcaagcaggggaccgattgggaaggtgg 237
>gb|U49913.1|ZMU49913 Zea mays ubiquitin-conjugating enzyme mRNA, partial cds Length = 337 Score = 77.8 bits (39), Expect = 4e-11 Identities = 119/146 (81%), Gaps = 1/146 (0%) Strand = Plus / Minus Query: 138 gaggagcgcaaatcgtggcgcaagaaccacccccatggcttcgtggccaaaccggagacc 197 ||||||||||| | ||||||||||||||||| || || ||||| ||| || ||||| | Sbjct: 317 gaggagcgcaaggcctggcgcaagaaccacccgcacggtttcgtcgccgaagcggagtcg 258 Query: 198 ctgccggatgggtccgtcaatctcatgctctggcggtgcgtcatccccggcaagccaggg 257 ||||| || || | | || || ||| |||||| |||| |||||| |||||| |||| Sbjct: 257 ctgcccgacgga-cggygaacctgatgatctggcagtgcaccatcccsngcaagcaaggg 199 Query: 258 actgactgggagggtggatatttccc 283 |||||||||||||||||||||||||| Sbjct: 198 actgactgggagggtggatatttccc 173
>gb|BT017879.1| Zea mays clone EL01N0513H12.c mRNA sequence Length = 763 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 111 ggaggcatcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccacccc 170 ||||| ||||| ||||||||||| || ||||||||||| | |||||||||||||||||| Sbjct: 50 ggaggaatcgcgcgcggccgcctcgccgaggagcgcaaggcctggcgcaagaaccacccc 109 Query: 171 catggcttcgtggc 184 || || |||||||| Sbjct: 110 cacggtttcgtggc 123
>gb|AY104461.1| Zea mays PCO145300 mRNA sequence Length = 916 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 111 ggaggcatcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccacccc 170 ||||| ||||| ||||||||||| || ||||||||||| | |||||||||||||||||| Sbjct: 83 ggaggaatcgcgcgcggccgcctcgccgaggagcgcaaggcctggcgcaagaaccacccc 142 Query: 171 catggcttcgtggc 184 || || |||||||| Sbjct: 143 cacggtttcgtggc 156
>gb|BT016839.1| Zea mays clone Contig672 mRNA sequence Length = 933 Score = 71.9 bits (36), Expect = 2e-09 Identities = 99/120 (82%) Strand = Plus / Minus Query: 111 ggaggcatcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccacccc 170 ||||| ||||| ||||||||||| || ||||||||||| | ||||||||||| |||||| Sbjct: 862 ggagggatcgcgcgcggccgcctcgccgaggagcgcaaggcctggcgcaagaatcacccc 803 Query: 171 catggcttcgtggccaaaccggagaccctgccggatgggtccgtcaatctcatgctctgg 230 || || |||||||| | |||||| | ||| | || |||||||| || |||||| ||||| Sbjct: 802 cacggtttcgtggcgaggccggagtcgctgaccgacgggtccgtgaacctcatggtctgg 743
>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete sequence Length = 105841 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 111 ggaggcatcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccaccc 169 ||||| ||||| ||||||||||| |||||||||||||| | ||||| ||||||||||| Sbjct: 47531 ggagggatcgcacgcggccgcctcgcggaggagcgcaaggcctggcggaagaaccaccc 47473
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 111 ggaggcatcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccaccc 169 ||||| ||||| ||||||||||| |||||||||||||| | ||||| ||||||||||| Sbjct: 20332029 ggagggatcgcacgcggccgcctcgcggaggagcgcaaggcctggcggaagaaccaccc 20331971
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 111 ggaggcatcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccaccc 169 ||||| ||||| ||||||||||| |||||||||||||| | ||||| ||||||||||| Sbjct: 20343301 ggagggatcgcacgcggccgcctcgcggaggagcgcaaggcctggcggaagaaccaccc 20343243
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 117 atcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccaccc 169 ||||| ||||||||||| ||||||||||| || ||||||| ||||||||||| Sbjct: 1298016 atcgcgcgcggccgcctcgcggaggagcggaaggcgtggcggaagaaccaccc 1298068
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 117 atcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccaccc 169 ||||| ||||||||||| ||||||||||| || ||||||| ||||||||||| Sbjct: 1298014 atcgcgcgcggccgcctcgcggaggagcggaaggcgtggcggaagaaccaccc 1298066
>gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1126B12, complete sequence Length = 146241 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 117 atcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccaccc 169 ||||| ||||||||||| ||||||||||| || ||||||| ||||||||||| Sbjct: 102918 atcgcgcgcggccgcctcgcggaggagcggaaggcgtggcggaagaaccaccc 102970
>emb|AJ580839.1|NBE580839 Nicotiana benthamiana mRNA for SUMO E2 conjugating enzyme SCE1 (sce1 gene) Length = 591 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 111 ggaggcatcgcccgcggccgcctagcggaggagcgcaaatcgtggcgcaagaaccacccc 170 ||||| || ||||| ||||| || || |||||||||||| | |||||||| || |||||| Sbjct: 103 ggaggtatagcccgtggccgtcttgcagaggagcgcaaagcttggcgcaaaaatcacccc 162 Query: 171 catgg 175 ||||| Sbjct: 163 catgg 167
>ref|XM_467011.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1889 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 gaagacgacgaagcggcggcg 73 ||||||||||||||||||||| Sbjct: 29 gaagacgacgaagcggcggcg 49
>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome Length = 241087 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 gacgacgaagcggcggcgacg 76 ||||||||||||||||||||| Sbjct: 116355 gacgacgaagcggcggcgacg 116335
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 gaagacgacgaagcggcggcg 73 ||||||||||||||||||||| Sbjct: 25913673 gaagacgacgaagcggcggcg 25913653
>dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1282_H11 Length = 143314 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 gaagacgacgaagcggcggcg 73 ||||||||||||||||||||| Sbjct: 65014 gaagacgacgaagcggcggcg 64994
>dbj|AK101360.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035H01, full insert sequence Length = 1888 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 gaagacgacgaagcggcggcg 73 ||||||||||||||||||||| Sbjct: 28 gaagacgacgaagcggcggcg 48
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gaagacgacgaagcggcggc 72 |||||||||||||||||||| Sbjct: 2078907 gaagacgacgaagcggcggc 2078926
>emb|BX321861.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 6/10 Length = 298050 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 tggaaaccttcaattacagt 427 |||||||||||||||||||| Sbjct: 3384 tggaaaccttcaattacagt 3403
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 catcgcccgcggccgcctagcgga 139 |||||||||||||||||| ||||| Sbjct: 26452012 catcgcccgcggccgcctcgcgga 26452035
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gaagcggcggcgacgaccgc 81 |||||||||||||||||||| Sbjct: 6984765 gaagcggcggcgacgaccgc 6984784
>dbj|AP003579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0709F06 Length = 170964 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 catcgcccgcggccgcctagcgga 139 |||||||||||||||||| ||||| Sbjct: 64051 catcgcccgcggccgcctcgcgga 64074 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,283,495 Number of Sequences: 3902068 Number of extensions: 4283495 Number of successful extensions: 77413 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76973 Number of HSP's gapped (non-prelim): 434 length of query: 585 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 562 effective length of database: 17,143,297,704 effective search space: 9634533309648 effective search space used: 9634533309648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
