ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal36i05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106235.1| Zea mays PCO066039 mRNA sequence 66 2e-08
2gb|AY258008.1| Nicotiana tabacum TGB12K interacting protein 3 (T... 46 0.020
3gb|AY258007.1| Nicotiana tabacum TGB12K interacting protein 2 (T... 46 0.020
4gb|AY107157.1| Zea mays PCO066038 mRNA sequence 44 0.078
5gb|AC156571.3| Mus musculus BAC clone RP23-264I19 from chromosom... 42 0.31
6gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.31
7dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.31
8dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.31
9dbj|AK121370.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.31
10dbj|AK098858.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.31
11dbj|AK062078.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.31
12gb|AC135639.4| Mus musculus BAC clone RP23-330O16 from chromosom... 40 1.2
13gb|AC105347.4| Homo sapiens BAC clone RP11-719M16 from 4, comple... 40 1.2
14gb|AY107283.1| Zea mays PCO076711 mRNA sequence 40 1.2
15gb|AY835586.1| Homo sapiens calpain 2, (m/II) large subunit (CAP... 38 4.8
16gb|BT013193.1| Lycopersicon esculentum clone 134344R, mRNA sequence 38 4.8
17emb|Z98271.1|MLCB1779 Mycobacterium leprae cosmid B1779 38 4.8
18emb|AL583919.1|MLEPRTN3 Mycobacterium leprae strain TN complete ... 38 4.8
19gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, comp... 38 4.8
20gb|DQ056143.1| Coprinellus disseminatus strain C345.1 mating-typ... 38 4.8
21gb|DQ056000.1| Coprinellus disseminatus strain TJ-00-100.1 para-... 38 4.8
22gb|DQ055999.1| Coprinellus disseminatus strain TJ-00-100.3 para-... 38 4.8
23gb|AC067946.6| Homo sapiens BAC clone RP11-627C20 from 4, comple... 38 4.8
24emb|BX546499.15| Zebrafish DNA sequence from clone DKEY-27P18 in... 38 4.8
25gb|AC096542.2| Homo sapiens chromosome 1 clone RP11-332L18, comp... 38 4.8
26gb|AC095050.3| Homo sapiens BAC clone RP11-287F9 from 4, complet... 38 4.8
27emb|BX255961.5| Zebrafish DNA sequence from clone DKEY-261N6 in ... 38 4.8
28gb|AF352797.1|AF352797 Nicotiana tabacum ankyrin-repeat protein ... 38 4.8
29gb|AC005674.11|AC005674 Homo sapiens chromosome 4 clone RP11-448... 38 4.8
30gb|AC108199.5| Homo sapiens BAC clone RP13-560N11 from 4, comple... 38 4.8
31emb|AJ538729.1|NTA538729 Nicotiana tabacum cDNA-AFLP-fragment BC... 38 4.8
32gb|AC022333.11|AC022333 Homo sapiens chr3 BAC RP11-64O13 (Roswel... 38 4.8
33gb|AC132387.4| Mus musculus BAC clone RP23-440M14 from 1, comple... 38 4.8
34dbj|AP003388.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 38 4.8
35dbj|AP003503.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 38 4.8
36emb|CR855318.9| Zebrafish DNA sequence from clone DKEY-239I15 in... 38 4.8
37emb|AL844535.13| Mouse DNA sequence from clone RP23-211K16 on ch... 38 4.8
38emb|CT025660.9| Mouse DNA sequence from clone RP24-79I19 on chro... 38 4.8
39dbj|AP003532.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 38 4.8
40emb|AL683815.13| Mouse DNA sequence from clone RP23-319N7 on chr... 38 4.8 
>gb|AY106235.1| Zea mays PCO066039 mRNA sequence
          Length = 1360

 Score = 65.9 bits (33), Expect = 2e-08
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                    
Query: 1   ccagatggctgagcagcttcagaaaagtgcgcagggtacaggggaacagggtgttcc 57
           |||||||||||| ||||||||||||||||| |||||| | || ||||||||| ||||
Sbjct: 288 ccagatggctgaacagcttcagaaaagtgctcagggtgctggagaacagggtattcc 344
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>gb|AY258008.1| Nicotiana tabacum TGB12K interacting protein 3 (TIP3) mRNA,
           complete cds
          Length = 1047

 Score = 46.1 bits (23), Expect = 0.020
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 2   cagatggctgagcagcttcagaa 24
           |||||||||||||||||||||||
Sbjct: 241 cagatggctgagcagcttcagaa 263
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>gb|AY258007.1| Nicotiana tabacum TGB12K interacting protein 2 (TIP2) mRNA,
           complete cds
          Length = 1050

 Score = 46.1 bits (23), Expect = 0.020
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 2   cagatggctgagcagcttcagaa 24
           |||||||||||||||||||||||
Sbjct: 244 cagatggctgagcagcttcagaa 266
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>gb|AY107157.1| Zea mays PCO066038 mRNA sequence
          Length = 776

 Score = 44.1 bits (22), Expect = 0.078
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 1   ccagatggctgagcagcttcagaaaagtgc 30
           |||||||| ||| |||||||||||||||||
Sbjct: 250 ccagatggttgaacagcttcagaaaagtgc 279
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>gb|AC156571.3| Mus musculus BAC clone RP23-264I19 from chromosome 13, complete
             sequence
          Length = 196911

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 43    ggaacagggtgttccaagttt 63
             |||||||||||||||||||||
Sbjct: 66839 ggaacagggtgttccaagttt 66819
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>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
              OSJNBa0065A15, complete sequence
          Length = 168806

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                   
Query: 1      ccagatggctgagcagcttcagaaaagtgcgcagggtacaggggaacagggtg 53
              ||||||||| |||||||| ||||| ||||| || |  || |||||||||||||
Sbjct: 150196 ccagatggcagagcagctgcagaagagtgctcatgtgaccggggaacagggtg 150248
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                     
Query: 1        ccagatggctgagcagcttcagaaaagtgcgcagggtacaggggaacagggtg 53
                ||||||||| |||||||| ||||| ||||| || |  || |||||||||||||
Sbjct: 19667121 ccagatggcagagcagctgcagaagagtgctcatgtgaccggggaacagggtg 19667173
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>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0450E05
          Length = 176553

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 1     ccagatggctgagcagcttcagaaaagtgcgcagggtacaggggaacagggtg 53
             ||||||||| |||||||| ||||| ||||| || |  || |||||||||||||
Sbjct: 12807 ccagatggcagagcagctgcagaagagtgctcatgtgaccggggaacagggtg 12859
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>dbj|AK121370.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125M12, full
           insert sequence
          Length = 1529

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 1   ccagatggctgagcagcttcagaaaagtgcgcagggtacaggggaacagggtg 53
           ||||||||| |||||||| ||||| ||||| || |  || |||||||||||||
Sbjct: 414 ccagatggcagagcagctgcagaagagtgctcatgtgaccggggaacagggtg 466
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>dbj|AK098858.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M21, full
           insert sequence
          Length = 1475

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 1   ccagatggctgagcagcttcagaaaagtgcgcagggtacaggggaacagggtg 53
           ||||||||| |||||||| ||||| ||||| || |  || |||||||||||||
Sbjct: 414 ccagatggcagagcagctgcagaagagtgctcatgtgaccggggaacagggtg 466
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>dbj|AK062078.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-F07, full
           insert sequence
          Length = 1418

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 1   ccagatggctgagcagcttcagaaaagtgcgcagggtacaggggaacagggtg 53
           ||||||||| |||||||| ||||| ||||| || |  || |||||||||||||
Sbjct: 419 ccagatggcagagcagctgcagaagagtgctcatgtgaccggggaacagggtg 471
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>gb|AC135639.4| Mus musculus BAC clone RP23-330O16 from chromosome 7, complete sequence
          Length = 217404

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     aggggaacagggtgttccaa 59
              ||||||||||||||||||||
Sbjct: 113088 aggggaacagggtgttccaa 113107
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>gb|AC105347.4| Homo sapiens BAC clone RP11-719M16 from 4, complete sequence
          Length = 69570

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     ctgagcagcttcagaaaagt 28
             ||||||||||||||||||||
Sbjct: 64256 ctgagcagcttcagaaaagt 64237
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>gb|AY107283.1| Zea mays PCO076711 mRNA sequence
          Length = 1604

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                           
Query: 4   gatggctgagcagcttcagaaaagtgcgcagggtacaggggaacaggg 51
           ||||||||||||||| |||| |||||| ||  | ||||| ||||||||
Sbjct: 483 gatggctgagcagctacagagaagtgctcaaagcacaggagaacaggg 530
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>gb|AY835586.1| Homo sapiens calpain 2, (m/II) large subunit (CAPN2) gene, complete cds
          Length = 66744

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     gctgagcagcttcagaaaa 26
             |||||||||||||||||||
Sbjct: 41722 gctgagcagcttcagaaaa 41740
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>gb|BT013193.1| Lycopersicon esculentum clone 134344R, mRNA sequence
          Length = 1379

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 2   cagatggctgagcagcttcagaa 24
           |||||||| ||||||||||||||
Sbjct: 340 cagatggcagagcagcttcagaa 362
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>emb|Z98271.1|MLCB1779 Mycobacterium leprae cosmid B1779
          Length = 43254

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 4     gatggctgagcagcttcagaaaa 26
             ||||||| |||||||||||||||
Sbjct: 27965 gatggctcagcagcttcagaaaa 27987
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>emb|AL583919.1|MLEPRTN3 Mycobacterium leprae strain TN complete genome; segment 3/10
          Length = 312050

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 4      gatggctgagcagcttcagaaaa 26
              ||||||| |||||||||||||||
Sbjct: 106400 gatggctcagcagcttcagaaaa 106378
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>gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, complete sequence
          Length = 181253

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 8      gctgagcagcttcagaaaa 26
              |||||||||||||||||||
Sbjct: 116198 gctgagcagcttcagaaaa 116216
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>gb|DQ056143.1| Coprinellus disseminatus strain C345.1 mating-type gene locus,
           complete sequence, and flanking genomic region
          Length = 75497

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 68  cctcaagcatacctggaaaccat 90
           |||||||||||||| ||||||||
Sbjct: 847 cctcaagcatacctcgaaaccat 869
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>gb|DQ056000.1| Coprinellus disseminatus strain TJ-00-100.1 para-aminobenzoic acid
           synthetase (PAB1) gene, partial cds
          Length = 540

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 68  cctcaagcatacctggaaaccat 90
           |||||||||||||| ||||||||
Sbjct: 507 cctcaagcatacctcgaaaccat 529
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>gb|DQ055999.1| Coprinellus disseminatus strain TJ-00-100.3 para-aminobenzoic acid
           synthetase (PAB1) gene, partial cds
          Length = 540

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 68  cctcaagcatacctggaaaccat 90
           |||||||||||||| ||||||||
Sbjct: 507 cctcaagcatacctcgaaaccat 529
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>gb|AC067946.6| Homo sapiens BAC clone RP11-627C20 from 4, complete sequence
          Length = 136875

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 87    ccatgacaaaagttatgca 105
             |||||||||||||||||||
Sbjct: 36420 ccatgacaaaagttatgca 36438
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>emb|BX546499.15| Zebrafish DNA sequence from clone DKEY-27P18 in linkage group 5,
             complete sequence
          Length = 194807

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 45    aacagggtgttccaagtttggat 67
             ||||||||||| |||||||||||
Sbjct: 10853 aacagggtgtttcaagtttggat 10875
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>gb|AC096542.2| Homo sapiens chromosome 1 clone RP11-332L18, complete sequence
          Length = 189411

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 8    gctgagcagcttcagaaaa 26
            |||||||||||||||||||
Sbjct: 4772 gctgagcagcttcagaaaa 4790
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>gb|AC095050.3| Homo sapiens BAC clone RP11-287F9 from 4, complete sequence
          Length = 220878

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 87    ccatgacaaaagttatgca 105
             |||||||||||||||||||
Sbjct: 34041 ccatgacaaaagttatgca 34059
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>emb|BX255961.5| Zebrafish DNA sequence from clone DKEY-261N6 in linkage group 9, complete
              sequence
          Length = 176428

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 85     aaccatgacaaaagttatg 103
              |||||||||||||||||||
Sbjct: 109981 aaccatgacaaaagttatg 109963
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>gb|AF352797.1|AF352797 Nicotiana tabacum ankyrin-repeat protein HBP1 mRNA, complete cds
          Length = 1331

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 2   cagatggctgagcagcttcagaa 24
           |||||||| ||||||||||||||
Sbjct: 336 cagatggcggagcagcttcagaa 358
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>gb|AC005674.11|AC005674 Homo sapiens chromosome 4 clone RP11-448G15, complete sequence
          Length = 199450

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     cagatggctgagcagcttc 20
             |||||||||||||||||||
Sbjct: 44189 cagatggctgagcagcttc 44207
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>gb|AC108199.5| Homo sapiens BAC clone RP13-560N11 from 4, complete sequence
          Length = 91042

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     cagatggctgagcagcttc 20
             |||||||||||||||||||
Sbjct: 46176 cagatggctgagcagcttc 46194
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>emb|AJ538729.1|NTA538729 Nicotiana tabacum cDNA-AFLP-fragment BC4-M42-056
          Length = 125

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 2   cagatggctgagcagcttcagaa 24
           |||||||| ||||||||||||||
Sbjct: 121 cagatggcggagcagcttcagaa 99
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>gb|AC022333.11|AC022333 Homo sapiens chr3 BAC RP11-64O13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 173907

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     tggctgagcagcttcagaa 24
             |||||||||||||||||||
Sbjct: 99002 tggctgagcagcttcagaa 98984
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>gb|AC132387.4| Mus musculus BAC clone RP23-440M14 from 1, complete sequence
          Length = 193449

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 63    tggatcctcaagcatacct 81
             |||||||||||||||||||
Sbjct: 78644 tggatcctcaagcatacct 78662
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>dbj|AP003388.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-768C19, complete
             sequence
          Length = 46441

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    tacaggggaacagggtgtt 55
             |||||||||||||||||||
Sbjct: 15579 tacaggggaacagggtgtt 15561
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>dbj|AP003503.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-86D13, complete
              sequence
          Length = 175454

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 6      tggctgagcagcttcagaa 24
              |||||||||||||||||||
Sbjct: 148625 tggctgagcagcttcagaa 148643
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>emb|CR855318.9| Zebrafish DNA sequence from clone DKEY-239I15 in linkage group 16,
             complete sequence
          Length = 150812

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 85    aaccatgacaaaagttatg 103
             |||||||||||||||||||
Sbjct: 55392 aaccatgacaaaagttatg 55410
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>emb|AL844535.13| Mouse DNA sequence from clone RP23-211K16 on chromosome 2, complete
             sequence
          Length = 204676

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 64    ggatcctcaagcatacctg 82
             |||||||||||||||||||
Sbjct: 44374 ggatcctcaagcatacctg 44392
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>emb|CT025660.9| Mouse DNA sequence from clone RP24-79I19 on chromosome 9, complete
             sequence
          Length = 219226

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 34    gggtacaggggaacagggt 52
             |||||||||||||||||||
Sbjct: 28685 gggtacaggggaacagggt 28703
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>dbj|AP003532.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-822P1, complete
             sequences
          Length = 204928

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 6     tggctgagcagcttcagaa 24
             |||||||||||||||||||
Sbjct: 14600 tggctgagcagcttcagaa 14618
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>emb|AL683815.13| Mouse DNA sequence from clone RP23-319N7 on chromosome 11, complete
             sequence
          Length = 39784

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    agggtacaggggaacaggg 51
             |||||||||||||||||||
Sbjct: 18288 agggtacaggggaacaggg 18270


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,035,170
Number of Sequences: 3902068
Number of extensions: 1035170
Number of successful extensions: 89143
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 89078
Number of HSP's gapped (non-prelim): 72
length of query: 107
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 86
effective length of database: 17,151,101,840
effective search space: 1474994758240
effective search space used: 1474994758240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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