>gb|AY549310.1| Oryza sativa (japonica cultivar-group) little protein 1 (LP1) mRNA,
           complete cds
          Length = 275

 Score =  204 bits (103), Expect = 2e-49
 Identities = 187/215 (86%)
 Strand = Plus / Plus

                                                                       
Query: 99  ccggcgtgcgtgcagtgcgggacgcgggagaacccgtgccggtgcaagttcatcgggccg 158
           |||| ||||||||||||||||||||     ||||||||| |||||||| |  |||| |||
Sbjct: 49  ccggtgtgcgtgcagtgcgggacgcacagcaacccgtgcaggtgcaaggtgctcggcccg 108

                                                                       
Query: 159 acgctggggttcctggcgttcgtggtgaccggcgtcgtagagtggccggtgggcgcggtg 218
           |||||||| ||| |||||||||||||| |||||||||| ||||||||| | |||||| | 
Sbjct: 109 acgctgggtttcgtggcgttcgtggtggccggcgtcgtggagtggccgctcggcgcgttc 168

                                                                       
Query: 219 gtgtacctgttccgccaccgcaagggccgccgcatcatgggacacccggccagggtcgtc 278
           |||||||||||||||||||||||||| |||||||||||||| ||||||||||  ||||||
Sbjct: 169 gtgtacctgttccgccaccgcaagggtcgccgcatcatggggcacccggccaacgtcgtc 228

                                              
Query: 279 tacccgcgcgtctccagggccatccccatctaatc 313
           ||||||||  || |||| || ||||||||||||||
Sbjct: 229 tacccgcggatcaccagcgcgatccccatctaatc 263

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  204 bits (103), Expect = 2e-49
 Identities = 187/215 (86%)
 Strand = Plus / Minus

                                                                            
Query: 99       ccggcgtgcgtgcagtgcgggacgcgggagaacccgtgccggtgcaagttcatcgggccg 158
                |||| ||||||||||||||||||||     ||||||||| |||||||| |  |||| |||
Sbjct: 25925295 ccggtgtgcgtgcagtgcgggacgcacagcaacccgtgcaggtgcaaggtgctcggcccg 25925236

                                                                            
Query: 159      acgctggggttcctggcgttcgtggtgaccggcgtcgtagagtggccggtgggcgcggtg 218
                |||||||| ||| |||||||||||||| |||||||||| ||||||||| | |||||| | 
Sbjct: 25925235 acgctgggtttcgtggcgttcgtggtggccggcgtcgtggagtggccgctcggcgcgttc 25925176

                                                                            
Query: 219      gtgtacctgttccgccaccgcaagggccgccgcatcatgggacacccggccagggtcgtc 278
                |||||||||||||||||||||||||| |||||||||||||| ||||||||||  ||||||
Sbjct: 25925175 gtgtacctgttccgccaccgcaagggtcgccgcatcatggggcacccggccaacgtcgtc 25925116

                                                   
Query: 279      tacccgcgcgtctccagggccatccccatctaatc 313
                ||||||||  || |||| || ||||||||||||||
Sbjct: 25925115 tacccgcggatcaccagcgcgatccccatctaatc 25925081

>dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0707D10
          Length = 172003

 Score =  204 bits (103), Expect = 2e-49
 Identities = 187/215 (86%)
 Strand = Plus / Minus

                                                                         
Query: 99    ccggcgtgcgtgcagtgcgggacgcgggagaacccgtgccggtgcaagttcatcgggccg 158
             |||| ||||||||||||||||||||     ||||||||| |||||||| |  |||| |||
Sbjct: 21362 ccggtgtgcgtgcagtgcgggacgcacagcaacccgtgcaggtgcaaggtgctcggcccg 21303

                                                                         
Query: 159   acgctggggttcctggcgttcgtggtgaccggcgtcgtagagtggccggtgggcgcggtg 218
             |||||||| ||| |||||||||||||| |||||||||| ||||||||| | |||||| | 
Sbjct: 21302 acgctgggtttcgtggcgttcgtggtggccggcgtcgtggagtggccgctcggcgcgttc 21243

                                                                         
Query: 219   gtgtacctgttccgccaccgcaagggccgccgcatcatgggacacccggccagggtcgtc 278
             |||||||||||||||||||||||||| |||||||||||||| ||||||||||  ||||||
Sbjct: 21242 gtgtacctgttccgccaccgcaagggtcgccgcatcatggggcacccggccaacgtcgtc 21183

                                                
Query: 279   tacccgcgcgtctccagggccatccccatctaatc 313
             ||||||||  || |||| || ||||||||||||||
Sbjct: 21182 tacccgcggatcaccagcgcgatccccatctaatc 21148

>dbj|AP003725.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0510C12
          Length = 177049

 Score =  204 bits (103), Expect = 2e-49
 Identities = 187/215 (86%)
 Strand = Plus / Minus

                                                                          
Query: 99     ccggcgtgcgtgcagtgcgggacgcgggagaacccgtgccggtgcaagttcatcgggccg 158
              |||| ||||||||||||||||||||     ||||||||| |||||||| |  |||| |||
Sbjct: 165219 ccggtgtgcgtgcagtgcgggacgcacagcaacccgtgcaggtgcaaggtgctcggcccg 165160

                                                                          
Query: 159    acgctggggttcctggcgttcgtggtgaccggcgtcgtagagtggccggtgggcgcggtg 218
              |||||||| ||| |||||||||||||| |||||||||| ||||||||| | |||||| | 
Sbjct: 165159 acgctgggtttcgtggcgttcgtggtggccggcgtcgtggagtggccgctcggcgcgttc 165100

                                                                          
Query: 219    gtgtacctgttccgccaccgcaagggccgccgcatcatgggacacccggccagggtcgtc 278
              |||||||||||||||||||||||||| |||||||||||||| ||||||||||  ||||||
Sbjct: 165099 gtgtacctgttccgccaccgcaagggtcgccgcatcatggggcacccggccaacgtcgtc 165040

                                                 
Query: 279    tacccgcgcgtctccagggccatccccatctaatc 313
              ||||||||  || |||| || ||||||||||||||
Sbjct: 165039 tacccgcggatcaccagcgcgatccccatctaatc 165005

>dbj|AK063634.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-F12, full
           insert sequence
          Length = 582

 Score =  204 bits (103), Expect = 2e-49
 Identities = 187/215 (86%)
 Strand = Plus / Plus

                                                                       
Query: 99  ccggcgtgcgtgcagtgcgggacgcgggagaacccgtgccggtgcaagttcatcgggccg 158
           |||| ||||||||||||||||||||     ||||||||| |||||||| |  |||| |||
Sbjct: 144 ccggtgtgcgtgcagtgcgggacgcacagcaacccgtgcaggtgcaaggtgctcggcccg 203

                                                                       
Query: 159 acgctggggttcctggcgttcgtggtgaccggcgtcgtagagtggccggtgggcgcggtg 218
           |||||||| ||| |||||||||||||| |||||||||| ||||||||| | |||||| | 
Sbjct: 204 acgctgggtttcgtggcgttcgtggtggccggcgtcgtggagtggccgctcggcgcgttc 263

                                                                       
Query: 219 gtgtacctgttccgccaccgcaagggccgccgcatcatgggacacccggccagggtcgtc 278
           |||||||||||||||||||||||||| |||||||||||||| ||||||||||  ||||||
Sbjct: 264 gtgtacctgttccgccaccgcaagggtcgccgcatcatggggcacccggccaacgtcgtc 323

                                              
Query: 279 tacccgcgcgtctccagggccatccccatctaatc 313
           ||||||||  || |||| || ||||||||||||||
Sbjct: 324 tacccgcggatcaccagcgcgatccccatctaatc 358

>gb|AF152397.2| Mycobacterium phlei alkanal monooxygenase-like protein gene,
           partial cds; and hypothetical protien,
           beta-lactamase-like protein (bllp), F420-dependent
           glucose-6-phosphate dehydrogenase (fgd), and
           hypothetical proteins genes, complete cds
          Length = 4275

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 202 ggccggtgggcgcggtggtgtacctgttccg 232
           |||||||| ||||||||||| ||||||||||
Sbjct: 236 ggccggtgcgcgcggtggtgcacctgttccg 266

>gb|AC158767.3| Mus musculus chromosome 1, clone RP24-128E5, complete sequence
          Length = 188758

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 51     acagggcacaggttcagcactcagca 76
              ||||| ||||||||||||||||||||
Sbjct: 152286 acaggacacaggttcagcactcagca 152261

>gb|AC164291.2| Mus musculus BAC clone RP24-85F23 from chromosome 16, complete sequence
          Length = 237479

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 340    ccctccctgtgtgtatgttgta 361
              ||||||||||||||||||||||
Sbjct: 234732 ccctccctgtgtgtatgttgta 234753

>gb|AC154265.2| Mus musculus BAC clone RP24-319O20 from 16, complete sequence
          Length = 206136

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 340    ccctccctgtgtgtatgttgta 361
              ||||||||||||||||||||||
Sbjct: 189913 ccctccctgtgtgtatgttgta 189892

>gb|AC117771.17| Mus musculus chromosome 1, clone RP24-512A5, complete sequence
          Length = 161292

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 51    acagggcacaggttcagcactcagca 76
             ||||| ||||||||||||||||||||
Sbjct: 45561 acaggacacaggttcagcactcagca 45586

>gb|AC132140.3| Mus musculus BAC clone RP23-82C19 from chromosome 19, complete sequence
          Length = 278583

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 19     gtccccataactggaagcaaa 39
              |||||||||||||||||||||
Sbjct: 262090 gtccccataactggaagcaaa 262110

>gb|AC126944.3| Mus musculus BAC clone RP23-19A4 from chromosome 19, complete sequence
          Length = 184164

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    gtccccataactggaagcaaa 39
             |||||||||||||||||||||
Sbjct: 48717 gtccccataactggaagcaaa 48737

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 207     gtgggcgcggtggtgtacctg 227
               |||||||||||||||||||||
Sbjct: 1010350 gtgggcgcggtggtgtacctg 1010330

>ref|XM_480300.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1361

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 225 ctgttccgccaccgcaagggccgc 248
           |||||| |||||||||||||||||
Sbjct: 468 ctgttcggccaccgcaagggccgc 491

>ref|XM_507146.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1590_E05.28
           mRNA
          Length = 1473

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 225 ctgttccgccaccgcaagggccgc 248
           |||||| |||||||||||||||||
Sbjct: 471 ctgttcggccaccgcaagggccgc 494

>gb|AC159891.2| Mus musculus BAC clone RP23-394E10 from chromosome 9, complete sequence
          Length = 178766

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 399   aataaaaatgggtgattgct 418
             ||||||||||||||||||||
Sbjct: 27546 aataaaaatgggtgattgct 27527

>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 200    gtggccggtgggcgcggtgg 219
              ||||||||||||||||||||
Sbjct: 848246 gtggccggtgggcgcggtgg 848265

>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    gagtggccggtgggcgcggt 217
              ||||||||||||||||||||
Sbjct: 299072 gagtggccggtgggcgcggt 299053

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 99      ccggcgtgcgtgcagtgcgggacg 122
               ||||||||||||| ||||||||||
Sbjct: 2484395 ccggcgtgcgtgcggtgcgggacg 2484418

>gb|AC156641.2| Mus musculus BAC clone RP23-204J8 from chromosome 9, complete sequence
          Length = 219981

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    aataaaaatgggtgattgct 418
              ||||||||||||||||||||
Sbjct: 201056 aataaaaatgggtgattgct 201037

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 225     ctgttccgccaccgcaagggccgc 248
               |||||| |||||||||||||||||
Sbjct: 4206101 ctgttcggccaccgcaagggccgc 4206078

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 202     ggccggtgggcgcggtggtg 221
               ||||||||||||||||||||
Sbjct: 8940490 ggccggtgggcgcggtggtg 8940471

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     tcctggcgttcgtggtgacc 188
               ||||||||||||||||||||
Sbjct: 4110778 tcctggcgttcgtggtgacc 4110759

>dbj|AP005606.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1590_E05
          Length = 148205

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 225    ctgttccgccaccgcaagggccgc 248
              |||||| |||||||||||||||||
Sbjct: 105724 ctgttcggccaccgcaagggccgc 105701

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 172     tggcgttcgtggtgaccggc 191
               ||||||||||||||||||||
Sbjct: 6540681 tggcgttcgtggtgaccggc 6540662

>dbj|AK100902.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131J04, full
           insert sequence
          Length = 1361

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 225 ctgttccgccaccgcaagggccgc 248
           |||||| |||||||||||||||||
Sbjct: 468 ctgttcggccaccgcaagggccgc 491

>dbj|AK068909.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003M02, full
           insert sequence
          Length = 1473

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 225 ctgttccgccaccgcaagggccgc 248
           |||||| |||||||||||||||||
Sbjct: 471 ctgttcggccaccgcaagggccgc 494

>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 239     caagggccgccgcatcatgg 258
               ||||||||||||||||||||
Sbjct: 2286333 caagggccgccgcatcatgg 2286314

>gb|AY109489.1| Zea mays CL17814_1 mRNA sequence
          Length = 1497

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  catgggacacccggccaggg 273
            ||||||||||||||||||||
Sbjct: 1238 catgggacacccggccaggg 1257

>gb|AY104458.1| Zea mays PCO099025 mRNA sequence
          Length = 1283

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 112 agtgcgggacgcgggagaac 131
           ||||||||||||||||||||
Sbjct: 83  agtgcgggacgcgggagaac 64

>gb|AC122892.4| Mus musculus BAC clone RP23-66P19 from 8, complete sequence
          Length = 216389

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    cccataactggaagcaaaga 41
             ||||||||||||||||||||
Sbjct: 70610 cccataactggaagcaaaga 70629


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,687,313
Number of Sequences: 3902068
Number of extensions: 3687313
Number of successful extensions: 55759
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55322
Number of HSP's gapped (non-prelim): 432
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)