| Clone Name | baal35p11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009062.1| Triticum aestivum clone wds1f.pk002.a12:fis, full insert mRNA sequence Length = 1970 Score = 1037 bits (523), Expect = 0.0 Identities = 667/715 (93%) Strand = Plus / Plus Query: 1 aatgacgtttacgattcagataccggtgctgataagaacaagaaagaatctgtcgtcaac 60 ||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||||| Sbjct: 492 aatgacgtttatgattcagatactggcgctgataagaacaaaaaagaatctgtcgtcaac 551 Query: 61 attgttggcagtcgagcagtgacacagtatgcagcgaacctttctcttctgctcgggttt 120 |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| || Sbjct: 552 attgttggcagtcgggcattgacacaatatgcagcgaacctttctcttctgctcggcatt 611 Query: 121 ggagggctattttgggcctttgctgaagcaggggacgtcaggttcatcgtgttggtgcta 180 || |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct: 612 ggtgggctattttgggcctttgcagaagcaggggatgtcaggttcatcgttttggtgcta 671 Query: 181 tgtgcaatcctctgcggctatgtttatcagtgcccgccgttccgattgagttatcgtggc 240 |||||||||||||| || |||||||| |||||||||||||||||||| ||||| || ||| Sbjct: 672 tgtgcaatcctctgtggttatgtttaccagtgcccgccgttccgattaagttaccgcggc 731 Query: 241 ctaggcgaaccattgtgttttgctgcatttggcccattggctacatcagctttctacttc 300 |||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| Sbjct: 732 ctaggcgaaccattatgttttgctgcatttggcccattggccacgtcagctttctacttc 791 Query: 301 tcaaacagcagcagaagcatttcaagcgggactgcgcttctccctatcaccaaaacagtc 360 |||||||||||||||||||||||||||||| ||| |||||||||| ||| |||||||||| Sbjct: 792 tcaaacagcagcagaagcatttcaagcggggctgtgcttctccctctcagcaaaacagtc 851 Query: 361 atagcttcatcgattcttgtcgggttgacaaccacactgatactcttctgcagccacttt 420 ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 852 gtagcttcatcgattcttgttgggttgacaaccaccctgatactcttctgcagccacttt 911 Query: 421 caccagatcgacggagacagggctgtcggaaagatgtctcccctggtaagaatcggcacc 480 || ||||| |||||||| |||||||| |||||||||||||||||||| |||||||||||| Sbjct: 912 catcagattgacggagatagggctgttggaaagatgtctcccctggtcagaatcggcacc 971 Query: 481 aaaacaggctcgacagtagtaacgcttgcgatcggcgccctctacgctctcttggcggct 540 ||||||||| ||||| |||| ||| ||| |||||||||||||||| |||||||||| ||| Sbjct: 972 aaaacaggcgcgacattagtgacggttgggatcggcgccctctacactctcttggctgct 1031 Query: 541 ttcggcataagcagatgcctcccgccatcctgcattgtccttggcgccctgactctccct 600 ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct: 1032 ttcggcataagcagatgcctcccaccatcctgcattgtccttggcgccatgactctccct 1091 Query: 601 ctgggcaaatgggtcgtggactacgtgcagagaaaccatgatgatgacgccaagatcttc 660 |||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct: 1092 ctgggcaaatgggttgtggactacgtgcagaggaaccatgatgatgacaccaagatcttc 1151 Query: 661 atggccaagtattactgcgtgcggctgcacgccgtgctcgggatggcgctggctt 715 ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct: 1152 atggccaagtattactgcgtgcggctgcacgccttgctcgggatggccctggctt 1206
>ref|NM_187680.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1041 Score = 349 bits (176), Expect = 8e-93 Identities = 410/488 (84%) Strand = Plus / Plus Query: 1 aatgacgtttacgattcagataccggtgctgataagaacaagaaagaatctgtcgtcaac 60 ||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || ||| Sbjct: 358 aatgatgtttacgattcagatactggggctgataagaacaagaaggaatctgttgttaac 417 Query: 61 attgttggcagtcgagcagtgacacagtatgcagcgaacctttctcttctgctcgggttt 120 || |||||||||||| | |||| || ||||| || || ||||||| ||| |||| ||| Sbjct: 418 atcgttggcagtcgaacgatgacgcaatatgctgcaaatatttctctcctgttcggattt 477 Query: 121 ggagggctattttgggcctttgctgaagcaggggacgtcaggttcatcgtgttggtgcta 180 |||||||||||||||||||| |||| ||||| | ||||||||| | | ||| Sbjct: 478 atggggctattttgggcctttgcccaagctggggatgccaggttcattttatcggtaacc 537 Query: 181 tgtgcaatcctctgcggctatgtttatcagtgcccgccgttccgattgagttatcgtggc 240 ||||||||| |||| |||||||||||||||||||| || |||||| | ||||| | || Sbjct: 538 tgtgcaatcatctgtggctatgtttatcagtgcccaccattccgactaagttacagggga 597 Query: 241 ctaggcgaaccattgtgttttgctgcatttggcccattggctacatcagctttctacttc 300 ||||| |||||||| ||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 598 ctaggtgaaccattatgttttgctgcatttggtccattggcaaccacagctttctacttc 657 Query: 301 tcaaacagcagcagaagcatttcaagcgggactgcgcttctccctatcaccaaaacagtc 360 |||||||||||||||| |||||| ||||| || || ||||||||| ||| ||||||||| Sbjct: 658 tcaaacagcagcagaaacatttccagcggaacagctcttctccctctcagtaaaacagtc 717 Query: 361 atagcttcatcgattcttgtcgggttgacaaccacactgatactcttctgcagccacttt 420 || |||||||| ||||| || ||| |||| || || |||||||||||||||||||| ||| Sbjct: 718 attgcttcatccattctagttgggctgacgactaccctgatactcttctgcagccatttt 777 Query: 421 caccagatcgacggagacagggctgtcggaaagatgtctcccctggtaagaatcggcacc 480 || ||||| || ||||| | ||||| || || |||||||||||||||||||| |||||| Sbjct: 778 catcagattgatggagatcgtgctgttgggaaaatgtctcccctggtaagaattggcacc 837 Query: 481 aaaacagg 488 |||||||| Sbjct: 838 aaaacagg 845 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 571 tgcattgtccttggcgccctgactctccctctgggcaaatgggtcgtggactacgtgcag 630 |||| ||||||| | ||| |||| |||||| ||||||||||||| |||||||| |||| | Sbjct: 928 tgcactgtcctttgtgccttgacactccctgtgggcaaatgggttgtggactatgtgctg 987 Query: 631 agaaaccatga 641 | ||||||||| Sbjct: 988 aaaaaccatga 998
>dbj|AK061907.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H11, full insert sequence Length = 1704 Score = 349 bits (176), Expect = 8e-93 Identities = 410/488 (84%) Strand = Plus / Plus Query: 1 aatgacgtttacgattcagataccggtgctgataagaacaagaaagaatctgtcgtcaac 60 ||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || ||| Sbjct: 411 aatgatgtttacgattcagatactggggctgataagaacaagaaggaatctgttgttaac 470 Query: 61 attgttggcagtcgagcagtgacacagtatgcagcgaacctttctcttctgctcgggttt 120 || |||||||||||| | |||| || ||||| || || ||||||| ||| |||| ||| Sbjct: 471 atcgttggcagtcgaacgatgacgcaatatgctgcaaatatttctctcctgttcggattt 530 Query: 121 ggagggctattttgggcctttgctgaagcaggggacgtcaggttcatcgtgttggtgcta 180 |||||||||||||||||||| |||| ||||| | ||||||||| | | ||| Sbjct: 531 atggggctattttgggcctttgcccaagctggggatgccaggttcattttatcggtaacc 590 Query: 181 tgtgcaatcctctgcggctatgtttatcagtgcccgccgttccgattgagttatcgtggc 240 ||||||||| |||| |||||||||||||||||||| || |||||| | ||||| | || Sbjct: 591 tgtgcaatcatctgtggctatgtttatcagtgcccaccattccgactaagttacagggga 650 Query: 241 ctaggcgaaccattgtgttttgctgcatttggcccattggctacatcagctttctacttc 300 ||||| |||||||| ||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 651 ctaggtgaaccattatgttttgctgcatttggtccattggcaaccacagctttctacttc 710 Query: 301 tcaaacagcagcagaagcatttcaagcgggactgcgcttctccctatcaccaaaacagtc 360 |||||||||||||||| |||||| ||||| || || ||||||||| ||| ||||||||| Sbjct: 711 tcaaacagcagcagaaacatttccagcggaacagctcttctccctctcagtaaaacagtc 770 Query: 361 atagcttcatcgattcttgtcgggttgacaaccacactgatactcttctgcagccacttt 420 || |||||||| ||||| || ||| |||| || || |||||||||||||||||||| ||| Sbjct: 771 attgcttcatccattctagttgggctgacgactaccctgatactcttctgcagccatttt 830 Query: 421 caccagatcgacggagacagggctgtcggaaagatgtctcccctggtaagaatcggcacc 480 || ||||| || ||||| | ||||| || || |||||||||||||||||||| |||||| Sbjct: 831 catcagattgatggagatcgtgctgttgggaaaatgtctcccctggtaagaattggcacc 890 Query: 481 aaaacagg 488 |||||||| Sbjct: 891 aaaacagg 898 Score = 81.8 bits (41), Expect = 3e-12 Identities = 119/145 (82%) Strand = Plus / Plus Query: 571 tgcattgtccttggcgccctgactctccctctgggcaaatgggtcgtggactacgtgcag 630 |||| ||||||| | ||| |||| |||||| ||||||||||||| |||||||| |||| | Sbjct: 981 tgcactgtcctttgtgccttgacactccctgtgggcaaatgggttgtggactatgtgctg 1040 Query: 631 agaaaccatgatgatgacgccaagatcttcatggccaagtattactgcgtgcggctgcac 690 | ||||||||| || || |||||| |||||||| ||||||||||| || ||||| || Sbjct: 1041 aaaaaccatgaagacaacagcaagattttcatggcaaagtattactgtgttcggctacat 1100 Query: 691 gccgtgctcgggatggcgctggctt 715 || || | |||||||| ||||||| Sbjct: 1101 gctctgtttgggatggcactggctt 1125
>dbj|AK066332.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013060C07, full insert sequence Length = 1800 Score = 349 bits (176), Expect = 8e-93 Identities = 410/488 (84%) Strand = Plus / Plus Query: 1 aatgacgtttacgattcagataccggtgctgataagaacaagaaagaatctgtcgtcaac 60 ||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || ||| Sbjct: 400 aatgatgtttacgattcagatactggggctgataagaacaagaaggaatctgttgttaac 459 Query: 61 attgttggcagtcgagcagtgacacagtatgcagcgaacctttctcttctgctcgggttt 120 || |||||||||||| | |||| || ||||| || || ||||||| ||| |||| ||| Sbjct: 460 atcgttggcagtcgaacgatgacgcaatatgctgcaaatatttctctcctgttcggattt 519 Query: 121 ggagggctattttgggcctttgctgaagcaggggacgtcaggttcatcgtgttggtgcta 180 |||||||||||||||||||| |||| ||||| | ||||||||| | | ||| Sbjct: 520 atggggctattttgggcctttgcccaagctggggatgccaggttcattttatcggtaacc 579 Query: 181 tgtgcaatcctctgcggctatgtttatcagtgcccgccgttccgattgagttatcgtggc 240 ||||||||| |||| |||||||||||||||||||| || |||||| | ||||| | || Sbjct: 580 tgtgcaatcatctgtggctatgtttatcagtgcccaccattccgactaagttacagggga 639 Query: 241 ctaggcgaaccattgtgttttgctgcatttggcccattggctacatcagctttctacttc 300 ||||| |||||||| ||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 640 ctaggtgaaccattatgttttgctgcatttggtccattggcaaccacagctttctacttc 699 Query: 301 tcaaacagcagcagaagcatttcaagcgggactgcgcttctccctatcaccaaaacagtc 360 |||||||||||||||| |||||| ||||| || || ||||||||| ||| ||||||||| Sbjct: 700 tcaaacagcagcagaaacatttccagcggaacagctcttctccctctcagtaaaacagtc 759 Query: 361 atagcttcatcgattcttgtcgggttgacaaccacactgatactcttctgcagccacttt 420 || |||||||| ||||| || ||| |||| || || |||||||||||||||||||| ||| Sbjct: 760 attgcttcatccattctagttgggctgacgactaccctgatactcttctgcagccatttt 819 Query: 421 caccagatcgacggagacagggctgtcggaaagatgtctcccctggtaagaatcggcacc 480 || ||||| || ||||| | ||||| || || |||||||||||||||||||| |||||| Sbjct: 820 catcagattgatggagatcgtgctgttgggaaaatgtctcccctggtaagaattggcacc 879 Query: 481 aaaacagg 488 |||||||| Sbjct: 880 aaaacagg 887 Score = 81.8 bits (41), Expect = 3e-12 Identities = 119/145 (82%) Strand = Plus / Plus Query: 571 tgcattgtccttggcgccctgactctccctctgggcaaatgggtcgtggactacgtgcag 630 |||| ||||||| | ||| |||| |||||| ||||||||||||| |||||||| |||| | Sbjct: 970 tgcactgtcctttgtgccttgacactccctgtgggcaaatgggttgtggactatgtgctg 1029 Query: 631 agaaaccatgatgatgacgccaagatcttcatggccaagtattactgcgtgcggctgcac 690 | ||||||||| || || |||||| |||||||| ||||||||||| || ||||| || Sbjct: 1030 aaaaaccatgaagacaacagcaagattttcatggcaaagtattactgtgttcggctacat 1089 Query: 691 gccgtgctcgggatggcgctggctt 715 || || | |||||||| ||||||| Sbjct: 1090 gctctgtttgggatggcactggctt 1114
>gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence Length = 77136 Score = 268 bits (135), Expect = 2e-68 Identities = 141/143 (98%) Strand = Plus / Plus Query: 68 gcagtcgagcagtgacacagtatgcagcgaacctttctcttctgctcgggtttggagggc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3522 gcagtcgagcagtgacacagtatgcagcgaacctttctcttctgctcgggtttggagggc 3581 Query: 128 tattttgggcctttgctgaagcaggggacgtcaggttcatcgtgttggtgctatgtgcaa 187 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 3582 tattttgggcctttgctgaagcaggggacgtcaggttcatggtgttggtgctatgtgcaa 3641 Query: 188 tcctctgcggctatgtttatcag 210 |||| |||||||||||||||||| Sbjct: 3642 tcctttgcggctatgtttatcag 3664 Score = 133 bits (67), Expect = 9e-28 Identities = 70/71 (98%) Strand = Plus / Plus Query: 1 aatgacgtttacgattcagataccggtgctgataagaacaagaaagaatctgtcgtcaac 60 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 3357 aatgacgtttacgattcagataccggtgctgataagaacaacaaagaatctgtcgtcaac 3416 Query: 61 attgttggcag 71 ||||||||||| Sbjct: 3417 attgttggcag 3427 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 219 gttccgattgagttatcgtggcctaggcgaaccatt 254 ||||||||| ||||| |||||||||||||||||||| Sbjct: 3880 gttccgattaagttaccgtggcctaggcgaaccatt 3915
>gb|AY112630.1| Zea mays CL552_1 mRNA sequence Length = 1615 Score = 163 bits (82), Expect = 1e-36 Identities = 299/369 (81%), Gaps = 3/369 (0%) Strand = Plus / Plus Query: 123 agggctattttgggcctttgctgaagcaggggacgtcaggttcatcgtgttggtgctatg 182 ||||||| ||||||||||||| ||||| ||| |||| ||||| | |||||| | | Sbjct: 494 agggctactttgggcctttgcagaagccaaggatatcagattcattttattggtgatctc 553 Query: 183 tgcaatcctctgcggctatgtttatcagtgcccgccgttccgattgagttatcgtggcct 242 ||||||| |||| || |||||||| ||||| || || |||||||| || || | || || Sbjct: 554 tgcaatcttctgtggttatgtttaccagtgtcctccattccgattaagctaccaaggact 613 Query: 243 aggcgaaccattgtgttttgctgcatttggcccattggctacatcagctttctacttctc 302 |||||| || |||||||| ||||||||||| || ||||| || |||| || |||||||| Sbjct: 614 aggcgagccgttgtgtttcgctgcatttggtcctttggcaaccacagccttttacttctc 673 Query: 303 aaacagcagcagaagcatttcaagcgg--ga-ctgcgcttctccctatcaccaaaacagt 359 |||||||||| || | ||| ||||| || | || ||||||||| |||| |||||||| Sbjct: 674 aaacagcagcttaaatacttcgagcggaggagcggctcttctccctctcactaaaacagt 733 Query: 360 catagcttcatcgattcttgtcgggttgacaaccacactgatactcttctgcagccactt 419 ||||||||||| |||| |||||| ||||||| || |||||||||||||||||||| || Sbjct: 734 tatagcttcatctgttctcgtcgggctgacaactactctgatactcttctgcagccattt 793 Query: 420 tcaccagatcgacggagacagggctgtcggaaagatgtctcccctggtaagaatcggcac 479 || |||||||| ||||| || || |||||||||||||| ||||||||||||||||| Sbjct: 794 ccatcagatcgatggagatctcgccgttggaaagatgtctcctctggtaagaatcggcac 853 Query: 480 caaaacagg 488 ||| |||| Sbjct: 854 taaagcagg 862 Score = 85.7 bits (43), Expect = 2e-13 Identities = 127/155 (81%) Strand = Plus / Plus Query: 559 ctcccgccatcctgcattgtccttggcgccctgactctccctctgggcaaatgggtcgtg 618 ||||||||||| ||||||||||| | ||||| ||||| || |||||||| ||||||| Sbjct: 933 ctcccgccatcttgcattgtcctctgtgcccttactctgcccatgggcaaaacggtcgtg 992 Query: 619 gactacgtgcagagaaaccatgatgatgacgccaagatcttcatggccaagtattactgc 678 |||||||||| || | | || || || |||| ||||| |||||||| ||||| |||||| Sbjct: 993 gactacgtgctgaaacatcacgaggacaacgcgaagatattcatggcgaagtactactgc 1052 Query: 679 gtgcggctgcacgccgtgctcgggatggcgctggc 713 ||||| |||||||| || | |||||||| ||||| Sbjct: 1053 gtgcgcctgcacgcgctgtttgggatggcactggc 1087 Score = 60.0 bits (30), Expect = 1e-05 Identities = 72/86 (83%) Strand = Plus / Plus Query: 1 aatgacgtttacgattcagataccggtgctgataagaacaagaaagaatctgtcgtcaac 60 ||||| ||||| || || ||||| || ||||||| | |||||||||||||||| |||| | Sbjct: 372 aatgatgtttatgactcggatacaggggctgatagggacaagaaagaatctgttgtcagc 431 Query: 61 attgttggcagtcgagcagtgacaca 86 ||| |||||| |||||| ||||||| Sbjct: 432 attactggcagccgagcaatgacaca 457
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 241 ctaggcgaaccattgtgttttgctgcatttggcccattggctacatcagctttctacttc 300 ||||| |||||||| ||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 4680567 ctaggtgaaccattatgttttgctgcatttggtccattggcaaccacagctttctacttc 4680508 Query: 301 tcaaacagcagcagaagcatttc 323 |||||||||||||||| |||||| Sbjct: 4680507 tcaaacagcagcagaaacatttc 4680485 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Minus Query: 1 aatgacgtttacgattcagataccggtgctgataagaacaagaaagaatctgtcgtcaac 60 ||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || ||| Sbjct: 4681106 aatgatgtttacgattcagatactggggctgataagaacaagaaggaatctgttgttaac 4681047 Query: 61 attgttggcag 71 || |||||||| Sbjct: 4681046 atcgttggcag 4681036 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 337 cttctccctatcaccaaaacagtcatagcttcatcgattcttgtcgggttgacaaccaca 396 ||||||||| ||| ||||||||||| |||||||| ||||| || ||| |||| || || Sbjct: 4680368 cttctccctctcagtaaaacagtcattgcttcatccattctagttgggctgacgactacc 4680309 Query: 397 ctgatactcttctgcagccactttca 422 |||||||||||||||||||| ||||| Sbjct: 4680308 ctgatactcttctgcagccattttca 4680283 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 577 gtccttggcgccctgactctccctctgggcaaatgggtcgtggactacgtgcagagaaac 636 |||||| | ||| |||| |||||| ||||||||||||| |||||||| |||| || |||| Sbjct: 4679830 gtcctttgtgccttgacactccctgtgggcaaatgggttgtggactatgtgctgaaaaac 4679771 Query: 637 catga 641 ||||| Sbjct: 4679770 catga 4679766 Score = 54.0 bits (27), Expect = 7e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 124 gggctattttgggcctttgctgaagcaggggacgtcaggttcatcgtgttggtgctatgt 183 |||||||||||||||||||| |||| ||||| | ||||||||| | | ||| ||| Sbjct: 4680868 gggctattttgggcctttgcccaagctggggatgccaggttcattttatcggtaacctgt 4680809 Query: 184 gcaatcctctgcggctatgtttatcag 210 |||||| |||| ||||||||||||||| Sbjct: 4680808 gcaatcatctgtggctatgtttatcag 4680782 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 651 caagatcttcatggccaagtattactgcgtgcggctgcacgccgtgctcgggatggcgct 710 |||||| |||||||| ||||||||||| || ||||| || || || | |||||||| || Sbjct: 4679662 caagattttcatggcaaagtattactgtgttcggctacatgctctgtttgggatggcact 4679603 Query: 711 ggctt 715 ||||| Sbjct: 4679602 ggctt 4679598 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 465 ggtaagaatcggcaccaaaacagg 488 ||||||||| |||||||||||||| Sbjct: 4680036 ggtaagaattggcaccaaaacagg 4680013
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 241 ctaggcgaaccattgtgttttgctgcatttggcccattggctacatcagctttctacttc 300 ||||| |||||||| ||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 4680682 ctaggtgaaccattatgttttgctgcatttggtccattggcaaccacagctttctacttc 4680623 Query: 301 tcaaacagcagcagaagcatttc 323 |||||||||||||||| |||||| Sbjct: 4680622 tcaaacagcagcagaaacatttc 4680600 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Minus Query: 1 aatgacgtttacgattcagataccggtgctgataagaacaagaaagaatctgtcgtcaac 60 ||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || ||| Sbjct: 4681221 aatgatgtttacgattcagatactggggctgataagaacaagaaggaatctgttgttaac 4681162 Query: 61 attgttggcag 71 || |||||||| Sbjct: 4681161 atcgttggcag 4681151 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 337 cttctccctatcaccaaaacagtcatagcttcatcgattcttgtcgggttgacaaccaca 396 ||||||||| ||| ||||||||||| |||||||| ||||| || ||| |||| || || Sbjct: 4680483 cttctccctctcagtaaaacagtcattgcttcatccattctagttgggctgacgactacc 4680424 Query: 397 ctgatactcttctgcagccactttca 422 |||||||||||||||||||| ||||| Sbjct: 4680423 ctgatactcttctgcagccattttca 4680398 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 577 gtccttggcgccctgactctccctctgggcaaatgggtcgtggactacgtgcagagaaac 636 |||||| | ||| |||| |||||| ||||||||||||| |||||||| |||| || |||| Sbjct: 4679945 gtcctttgtgccttgacactccctgtgggcaaatgggttgtggactatgtgctgaaaaac 4679886 Query: 637 catga 641 ||||| Sbjct: 4679885 catga 4679881 Score = 54.0 bits (27), Expect = 7e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 124 gggctattttgggcctttgctgaagcaggggacgtcaggttcatcgtgttggtgctatgt 183 |||||||||||||||||||| |||| ||||| | ||||||||| | | ||| ||| Sbjct: 4680983 gggctattttgggcctttgcccaagctggggatgccaggttcattttatcggtaacctgt 4680924 Query: 184 gcaatcctctgcggctatgtttatcag 210 |||||| |||| ||||||||||||||| Sbjct: 4680923 gcaatcatctgtggctatgtttatcag 4680897 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 651 caagatcttcatggccaagtattactgcgtgcggctgcacgccgtgctcgggatggcgct 710 |||||| |||||||| ||||||||||| || ||||| || || || | |||||||| || Sbjct: 4679777 caagattttcatggcaaagtattactgtgttcggctacatgctctgtttgggatggcact 4679718 Query: 711 ggctt 715 ||||| Sbjct: 4679717 ggctt 4679713 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 465 ggtaagaatcggcaccaaaacagg 488 ||||||||| |||||||||||||| Sbjct: 4680151 ggtaagaattggcaccaaaacagg 4680128
>gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1217B09, complete sequence Length = 148894 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 241 ctaggcgaaccattgtgttttgctgcatttggcccattggctacatcagctttctacttc 300 ||||| |||||||| ||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 121522 ctaggtgaaccattatgttttgctgcatttggtccattggcaaccacagctttctacttc 121463 Query: 301 tcaaacagcagcagaagcatttc 323 |||||||||||||||| |||||| Sbjct: 121462 tcaaacagcagcagaaacatttc 121440 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Minus Query: 1 aatgacgtttacgattcagataccggtgctgataagaacaagaaagaatctgtcgtcaac 60 ||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || ||| Sbjct: 122061 aatgatgtttacgattcagatactggggctgataagaacaagaaggaatctgttgttaac 122002 Query: 61 attgttggcag 71 || |||||||| Sbjct: 122001 atcgttggcag 121991 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 337 cttctccctatcaccaaaacagtcatagcttcatcgattcttgtcgggttgacaaccaca 396 ||||||||| ||| ||||||||||| |||||||| ||||| || ||| |||| || || Sbjct: 121323 cttctccctctcagtaaaacagtcattgcttcatccattctagttgggctgacgactacc 121264 Query: 397 ctgatactcttctgcagccactttca 422 |||||||||||||||||||| ||||| Sbjct: 121263 ctgatactcttctgcagccattttca 121238 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 577 gtccttggcgccctgactctccctctgggcaaatgggtcgtggactacgtgcagagaaac 636 |||||| | ||| |||| |||||| ||||||||||||| |||||||| |||| || |||| Sbjct: 120785 gtcctttgtgccttgacactccctgtgggcaaatgggttgtggactatgtgctgaaaaac 120726 Query: 637 catga 641 ||||| Sbjct: 120725 catga 120721 Score = 54.0 bits (27), Expect = 7e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 124 gggctattttgggcctttgctgaagcaggggacgtcaggttcatcgtgttggtgctatgt 183 |||||||||||||||||||| |||| ||||| | ||||||||| | | ||| ||| Sbjct: 121823 gggctattttgggcctttgcccaagctggggatgccaggttcattttatcggtaacctgt 121764 Query: 184 gcaatcctctgcggctatgtttatcag 210 |||||| |||| ||||||||||||||| Sbjct: 121763 gcaatcatctgtggctatgtttatcag 121737 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 651 caagatcttcatggccaagtattactgcgtgcggctgcacgccgtgctcgggatggcgct 710 |||||| |||||||| ||||||||||| || ||||| || || || | |||||||| || Sbjct: 120617 caagattttcatggcaaagtattactgtgttcggctacatgctctgtttgggatggcact 120558 Query: 711 ggctt 715 ||||| Sbjct: 120557 ggctt 120553 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 465 ggtaagaatcggcaccaaaacagg 488 ||||||||| |||||||||||||| Sbjct: 120991 ggtaagaattggcaccaaaacagg 120968
>ref|NM_104743.2| Arabidopsis thaliana ABC4; 1,4-dihydroxy-2-naphthoate octaprenyltransferase/ prenyltransferase AT1G60600 (ABC4) mRNA, complete cds Length = 1603 Score = 46.1 bits (23), Expect = 0.16 Identities = 41/47 (87%) Strand = Plus / Plus Query: 652 aagatcttcatggccaagtattactgcgtgcggctgcacgccgtgct 698 ||||| |||||||||||||||||||| ||| | || |||||| |||| Sbjct: 1415 aagatattcatggccaagtattactgtgtgagactccacgccttgct 1461 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 1 aatgacgtttacgattcagataccggtgctgataagaacaa 41 ||||| ||||| |||| |||||||| |||||||||||||| Sbjct: 773 aatgatgtttatgattttgataccggagctgataagaacaa 813
>gb|BT012196.1| Arabidopsis thaliana At1g60600 gene, complete cds Length = 864 Score = 46.1 bits (23), Expect = 0.16 Identities = 41/47 (87%) Strand = Plus / Plus Query: 652 aagatcttcatggccaagtattactgcgtgcggctgcacgccgtgct 698 ||||| |||||||||||||||||||| ||| | || |||||| |||| Sbjct: 778 aagatattcatggccaagtattactgtgtgagactccacgccttgct 824 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 1 aatgacgtttacgattcagataccggtgctgataagaacaa 41 ||||| ||||| |||| |||||||| |||||||||||||| Sbjct: 136 aatgatgtttatgattttgataccggagctgataagaacaa 176
>gb|AC002292.1|AC002292 Arabidopsis thaliana BAC F8A5, complete sequence Length = 120787 Score = 46.1 bits (23), Expect = 0.16 Identities = 41/47 (87%) Strand = Plus / Minus Query: 652 aagatcttcatggccaagtattactgcgtgcggctgcacgccgtgct 698 ||||| |||||||||||||||||||| ||| | || |||||| |||| Sbjct: 48883 aagatattcatggccaagtattactgtgtgagactccacgccttgct 48837 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 1 aatgacgtttacgattcagataccggtgctgataagaacaa 41 ||||| ||||| |||| |||||||| |||||||||||||| Sbjct: 50076 aatgatgtttatgattttgataccggagctgataagaacaa 50036
>emb|BX814112.1|CNS0ADU4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB57ZH04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 475 Score = 44.1 bits (22), Expect = 0.63 Identities = 25/26 (96%) Strand = Plus / Plus Query: 652 aagatcttcatggccaagtattactg 677 ||||| |||||||||||||||||||| Sbjct: 227 aagatattcatggccaagtattactg 252
>ref|XM_753657.1| Ustilago maydis 521 hypothetical protein (UM02603.1) partial mRNA Length = 3459 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 578 tccttggcgccctgactctccctct 602 |||||||||||||| |||||||||| Sbjct: 3344 tccttggcgccctgcctctccctct 3320
>gb|AC158660.4| Mus musculus 6 BAC RP23-387H1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 199439 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 ttgctgaagcaggggacgtca 160 ||||||||||||||||||||| Sbjct: 100257 ttgctgaagcaggggacgtca 100237
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 502 acgcttgcgatcggcgccctc 522 ||||||||||||||||||||| Sbjct: 2714104 acgcttgcgatcggcgccctc 2714124
>emb|AL844167.7| Mouse DNA sequence from clone RP23-66F6 on chromosome 2, complete sequence Length = 232834 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 tgctgataagaacaagaaaga 47 ||||||||||||||||||||| Sbjct: 208137 tgctgataagaacaagaaaga 208157
>gb|AF241729.2| Homo sapiens chromosome X clone RP5-817K2 map p11.4, complete sequence Length = 141582 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ctcaaacagcagcagaagca 319 |||||||||||||||||||| Sbjct: 47219 ctcaaacagcagcagaagca 47200
>gb|AC183611.2| Pan troglodytes BAC clone CH251-193J21 from chromosome 4, complete sequence Length = 166748 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 aagaacaagaaagaatctgt 53 |||||||||||||||||||| Sbjct: 65957 aagaacaagaaagaatctgt 65938
>gb|AF431601.1| Uncultured Verrucomicrobia bacterium clone S51.19PG 16S ribosomal RNA gene, partial sequence Length = 556 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 tcggaaagatgtctcccctg 465 |||||||||||||||||||| Sbjct: 171 tcggaaagatgtctcccctg 152
>emb|AL590966.10| Human DNA sequence from clone RP11-191N8 on chromosome 1 Contains the DUSP10 gene for dual specificity phosphatase 10 (DUSP10), a novel gene and a CpG island, complete sequence Length = 165588 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 aagaacaagaaagaatctgt 53 |||||||||||||||||||| Sbjct: 51206 aagaacaagaaagaatctgt 51187
>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome Length = 1522076 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 cagtatgcagcgaacctttc 104 |||||||||||||||||||| Sbjct: 1305985 cagtatgcagcgaacctttc 1305966
>emb|CR352326.5| Zebrafish DNA sequence from clone CH211-105K20 in linkage group 13, complete sequence Length = 174828 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 ctcaaacagcagcagaagca 319 |||||||||||||||||||| Sbjct: 54829 ctcaaacagcagcagaagca 54848
>gb|AC068058.12| Homo sapiens chromosome 10 clone RP11-285A18, complete sequence Length = 168862 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 tgtgttttgctgcatttggc 273 |||||||||||||||||||| Sbjct: 38935 tgtgttttgctgcatttggc 38954
>gb|AC103969.4| Homo sapiens chromosome 15, clone RP11-876F5, complete sequence Length = 121054 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 ctcaaacagcagcagaagca 319 |||||||||||||||||||| Sbjct: 66629 ctcaaacagcagcagaagca 66648
>ref|NM_063987.4| Caenorhabditis elegans F40F8.5 (F40F8.5) mRNA, complete cds Length = 2870 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 agagaaaccatgatgatgac 648 |||||||||||||||||||| Sbjct: 849 agagaaaccatgatgatgac 868 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 agagaaaccatgatgatgac 648 |||||||||||||||||||| Sbjct: 714 agagaaaccatgatgatgac 733
>gb|AC022212.4|AC022212 Homo sapiens BAC clone RP11-708E9 from Xq23, complete sequence Length = 187313 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 ctcaaacagcagcagaagca 319 |||||||||||||||||||| Sbjct: 120913 ctcaaacagcagcagaagca 120894
>gb|AY899214.1| Streptomyces aizunensis strain NRRL B-11277 glycosyltransferase, polyketide synthase type Is, acyl transferase, membrane protein, ABC transporter, sugar dehydratase/epimerase, sugar epimerase, sugar nucleotidyltransferase, sugar dehydratase/epimerase, thioesterase, acyl CoA ligase, amine oxidase, phosphopantetheinyl transferase, transcriptional regulator, carboxylase/carboxyltransferase, amidinohydrolase, amide synthetase, 5-aminolevulinate synthase, and acyl CoA ligase genes, complete cds; and unknown gene Length = 161719 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 677 gcgtgcggctgcacgccgtg 696 |||||||||||||||||||| Sbjct: 91668 gcgtgcggctgcacgccgtg 91687
>dbj|AP002062.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T22B15 Length = 112406 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 291 tttctacttctcaaacagcagcag 314 ||||| |||||||||||||||||| Sbjct: 101819 tttcttcttctcaaacagcagcag 101796
>dbj|AP002033.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: F1M23 Length = 112684 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 291 tttctacttctcaaacagcagcag 314 ||||| |||||||||||||||||| Sbjct: 84506 tttcttcttctcaaacagcagcag 84483 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,124,845 Number of Sequences: 3902068 Number of extensions: 5124845 Number of successful extensions: 95273 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95090 Number of HSP's gapped (non-prelim): 177 length of query: 715 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 692 effective length of database: 17,143,297,704 effective search space: 11863162011168 effective search space used: 11863162011168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)