Clone Information

BLAST Search Result

Clone Name	baal36d15
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_476696.1\| Oryza sativa (japonica cultivar-group), mRNA	414	e-112
2	dbj\|AK120286.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	406	e-110
3	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	278	2e-71
4	dbj\|AP003847.3\| Oryza sativa (japonica cultivar-group) genomic D...	278	2e-71
5	gb\|AY110157.1\| Zea mays CL7807_-1 mRNA sequence	258	2e-65
6	dbj\|AB088126.1\| Oryza glumipatula DNA, retroposon p-SINE1-r807, ...	86	1e-13
7	dbj\|AP006407.1\| Lotus japonicus genomic DNA, chromosome 4, clone...	74	5e-10
8	gb\|AC097174.2\| Oryza sativa (japonica cultivar-group) chromosome...	48	0.028
9	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.028
10	ref\|NM_125086.2\| Arabidopsis thaliana catalytic/ lactoylglutathi...	42	1.7
11	emb\|Z47810.1\|CEF45E10 Caenorhabditis elegans Cosmid F45E10, comp...	42	1.7
12	emb\|AL365276.9\| Human DNA sequence from clone RP11-274C15 on chr...	42	1.7
13	gb\|BT024587.1\| Arabidopsis thaliana At5g57040 mRNA, complete cds	42	1.7
14	gb\|AY088499.1\| Arabidopsis thaliana clone 7233 mRNA, complete se...	42	1.7
15	dbj\|AB024035.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	42	1.7
16	gb\|AC163032.5\| Mus musculus BAC clone RP24-144G20 from chromosom...	40	6.8
17	ref\|NM_012761.1\| Rattus norvegicus Sp4 transcription factor (Sp4...	40	6.8
18	ref\|NM_009239.2\| Mus musculus trans-acting transcription factor ...	40	6.8
19	gb\|BC076630.1\| Mus musculus trans-acting transcription factor 4,...	40	6.8
20	ref\|XM_539462.2\| PREDICTED: Canis familiaris similar to Sp4 tran...	40	6.8
21	ref\|XM_857849.1\| PREDICTED: Canis familiaris similar to Sp4 tran...	40	6.8
22	gb\|AC134349.2\| Homo sapiens 12 BAC RP11-785H5 (Roswell Park Canc...	40	6.8
23	gb\|AC007030.3\| Homo sapiens PAC clone RP5-1112I4 from 7, complet...	40	6.8
24	gb\|AC163034.4\| Mus musculus BAC clone RP23-394C13 from chromosom...	40	6.8
25	emb\|AL589651.8\| Mouse DNA sequence from clone RP23-138F20 on chr...	40	6.8
26	gb\|AC135849.6\| Pan troglodytes clone ptb-33n14, complete sequence	40	6.8
27	emb\|CR602702.1\| full-length cDNA clone CS0DI063YN06 of Placenta ...	40	6.8
28	emb\|CR598768.1\| full-length cDNA clone CS0DE005YD08 of Placenta ...	40	6.8
29	dbj\|AP007169.1\| Aspergillus oryzae RIB40 genomic DNA, SC038	40	6.8
30	gb\|AC090338.6\| Homo sapiens chromosome 18, clone RP11-704C2, com...	40	6.8
31	gb\|AC015617.8\| Homo sapiens, clone RP11-45H23, complete sequence	40	6.8
32	gb\|AC124172.4\| Mus musculus BAC clone RP23-168P24 from chromosom...	40	6.8
33	gb\|AC000085.5\| Homo sapiens Chromosome 22q11.2 BAC Clone 72f8 In...	40	6.8
34	gb\|AC000073.1\| Homo sapiens Chromosome 22q11.2 Cosmid Clone 19d3...	40	6.8
35	dbj\|AB221633.1\| Mus musculus cDNA pooled tissues:(tissue_type=br...	40	6.8
36	ref\|XM_579348.1\| PREDICTED: Rattus norvegicus Sp4 transcription ...	40	6.8
37	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	6.8
38	emb\|BX323818.8\| Zebrafish DNA sequence from clone DKEY-48H7 in l...	40	6.8
39	gb\|U62522.1\|MMU62522 Mus musculus zinc finger transcription fact...	40	6.8
40	emb\|AL844592.6\| Mouse DNA sequence from clone RP23-244J24 on chr...	40	6.8
41	gb\|U07610.1\|SENDHF1B Rattus norvegicus Sprague-Dawley zinc finge...	40	6.8

>ref|XM_476696.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 495

 Score =  414 bits (209), Expect = e-112
 Identities = 345/391 (88%)
 Strand = Plus / Plus

                                                                       
Query: 99  gtcccaggaacctgactatggagttgttagtatgcaccatgttggaatactatgtgaaaa 158
           ||||||||||||||  |||||||||||||| || ||||||||||| || |||||||||||
Sbjct: 105 gtcccaggaacctgcttatggagttgttagcattcaccatgttgggatcctatgtgaaaa 164

                                                                       
Query: 159 tcttgaaaggtcnatggcattctaccaggacatccttggtctaaaggtgaatnctgctag 218
           |||||||||||| ||||| |||||| | ||  | |||||||| ||||||||| |||||||
Sbjct: 165 tcttgaaaggtcaatggccttctacaaagatctgcttggtcttaaggtgaatcctgctag 224

                                                                       
Query: 219 gccaaatgacaagcttccttacagaggtgcttggctctgggttggttctgagatgatcca 278
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 225 gccaaccgacaagcttccttacagaggtgcttggctctgggttggttctgagatgattca 284

                                                                       
Query: 279 cttgatggagctgccaaatccggatccactgacaggacgcccagagcatggcgggcgtga 338
           ||||||||||||||||||||| |||||| |||| || |||||||||||||| || |||||
Sbjct: 285 cttgatggagctgccaaatcccgatccattgactgggcgcccagagcatgggggacgtga 344

                                                                       
Query: 339 tcgtcatacctgtatagcaatcagagatgtcttgaagttgaaagaaatctttgacaaagc 398
           ||||||||||||||| || |||| |||||| |||||||| ||||||||||||||||||||
Sbjct: 345 tcgtcatacctgtatggcgatcaaagatgtgttgaagttaaaagaaatctttgacaaagc 404

                                                                       
Query: 399 ggaaatcagctacacactcagcaaatctgggcgtccagcgatctttgcacgagacccgga 458
            | |||||  |||||||| |||||||| ||||| ||||| || ||||| || ||||||||
Sbjct: 405 cggaatcaaatacacacttagcaaatcagggcgaccagcaatatttgctcgggacccgga 464

                                          
Query: 459 tggaaacgcgttggaatttacacaagtgtag 489
            ||||| ||  |||| || ||||||||||||
Sbjct: 465 cggaaatgcactggagttcacacaagtgtag 495

to top

>dbj|AK120286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050B15, full
           insert sequence
          Length = 902

 Score =  406 bits (205), Expect = e-110
 Identities = 344/391 (87%)
 Strand = Plus / Plus

                                                                       
Query: 99  gtcccaggaacctgactatggagttgttagtatgcaccatgttggaatactatgtgaaaa 158
           ||||||||||||||  ||||||||||||||  | ||||||||||| || |||||||||||
Sbjct: 235 gtcccaggaacctgcttatggagttgttagcgttcaccatgttgggatcctatgtgaaaa 294

                                                                       
Query: 159 tcttgaaaggtcnatggcattctaccaggacatccttggtctaaaggtgaatnctgctag 218
           |||||||||||| ||||| |||||| | ||  | |||||||| ||||||||| |||||||
Sbjct: 295 tcttgaaaggtcaatggccttctacaaagatctgcttggtcttaaggtgaatcctgctag 354

                                                                       
Query: 219 gccaaatgacaagcttccttacagaggtgcttggctctgggttggttctgagatgatcca 278
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 355 gccaaccgacaagcttccttacagaggtgcttggctctgggttggttctgagatgattca 414

                                                                       
Query: 279 cttgatggagctgccaaatccggatccactgacaggacgcccagagcatggcgggcgtga 338
           ||||||||||||||||||||| |||||| |||| || |||||||||||||| || |||||
Sbjct: 415 cttgatggagctgccaaatcccgatccattgactgggcgcccagagcatgggggacgtga 474

                                                                       
Query: 339 tcgtcatacctgtatagcaatcagagatgtcttgaagttgaaagaaatctttgacaaagc 398
           ||||||||||||||| || |||| |||||| |||||||| ||||||||||||||||||||
Sbjct: 475 tcgtcatacctgtatggcgatcaaagatgtgttgaagttaaaagaaatctttgacaaagc 534

                                                                       
Query: 399 ggaaatcagctacacactcagcaaatctgggcgtccagcgatctttgcacgagacccgga 458
            | |||||  |||||||| |||||||| ||||| ||||| || ||||| || ||||||||
Sbjct: 535 cggaatcaaatacacacttagcaaatcagggcgaccagcaatatttgctcgggacccgga 594

                                          
Query: 459 tggaaacgcgttggaatttacacaagtgtag 489
            ||||| ||  |||| || ||||||||||||
Sbjct: 595 cggaaatgcactggagttcacacaagtgtag 625

to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  278 bits (140), Expect = 2e-71
 Identities = 187/203 (92%)
 Strand = Plus / Minus

                                                                           
Query: 196     ggtctaaaggtgaatnctgctaggccaaatgacaagcttccttacagaggtgcttggctc 255
               ||||| ||||||||| ||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 3278097 ggtcttaaggtgaatcctgctaggccaaccgacaagcttccttacagaggtgcttggctc 3278038

                                                                           
Query: 256     tgggttggttctgagatgatccacttgatggagctgccaaatccggatccactgacagga 315
               |||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| || 
Sbjct: 3278037 tgggttggttctgagatgattcacttgatggagctgccaaatcccgatccattgactggg 3277978

                                                                           
Query: 316     cgcccagagcatggcgggcgtgatcgtcatacctgtatagcaatcagagatgtcttgaag 375
               |||||||||||||| || |||||||||||||||||||| || |||| |||||| ||||||
Sbjct: 3277977 cgcccagagcatgggggacgtgatcgtcatacctgtatggcgatcaaagatgtgttgaag 3277918

                                      
Query: 376     ttgaaagaaatctttgacaaagc 398
               || ||||||||||||||||||||
Sbjct: 3277917 ttaaaagaaatctttgacaaagc 3277895



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 70/78 (89%)
 Strand = Plus / Minus

                                                                           
Query: 106     gaacctgactatggagttgttagtatgcaccatgttggaatactatgtgaaaatcttgaa 165
               |||||||  |||||||||||||| || ||||||||||| || ||||||||||||||||||
Sbjct: 3278304 gaacctgcttatggagttgttagcattcaccatgttgggatcctatgtgaaaatcttgaa 3278245

                                 
Query: 166     aggtcnatggcattctac 183
               ||||| ||||| ||||||
Sbjct: 3278244 aggtcaatggccttctac 3278227



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                           
Query: 409     tacacactcagcaaatctgggcgtccagcgatctttgcacgagacccggatggaaacgcg 468
               |||||||| |||||||| ||||| ||||| || ||||| || |||||||| ||||| || 
Sbjct: 3277312 tacacacttagcaaatcagggcgaccagcaatatttgctcgggacccggacggaaatgca 3277253

                                    
Query: 469     ttggaatttacacaagtgtag 489
                |||| || ||||||||||||
Sbjct: 3277252 ctggagttcacacaagtgtag 3277232

to top

>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score =  278 bits (140), Expect = 2e-71
 Identities = 187/203 (92%)
 Strand = Plus / Minus

                                                                         
Query: 196   ggtctaaaggtgaatnctgctaggccaaatgacaagcttccttacagaggtgcttggctc 255
             ||||| ||||||||| ||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 87790 ggtcttaaggtgaatcctgctaggccaaccgacaagcttccttacagaggtgcttggctc 87731

                                                                         
Query: 256   tgggttggttctgagatgatccacttgatggagctgccaaatccggatccactgacagga 315
             |||||||||||||||||||| ||||||||||||||||||||||| |||||| |||| || 
Sbjct: 87730 tgggttggttctgagatgattcacttgatggagctgccaaatcccgatccattgactggg 87671

                                                                         
Query: 316   cgcccagagcatggcgggcgtgatcgtcatacctgtatagcaatcagagatgtcttgaag 375
             |||||||||||||| || |||||||||||||||||||| || |||| |||||| ||||||
Sbjct: 87670 cgcccagagcatgggggacgtgatcgtcatacctgtatggcgatcaaagatgtgttgaag 87611

                                    
Query: 376   ttgaaagaaatctttgacaaagc 398
             || ||||||||||||||||||||
Sbjct: 87610 ttaaaagaaatctttgacaaagc 87588



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 70/78 (89%)
 Strand = Plus / Minus

                                                                         
Query: 106   gaacctgactatggagttgttagtatgcaccatgttggaatactatgtgaaaatcttgaa 165
             |||||||  |||||||||||||| || ||||||||||| || ||||||||||||||||||
Sbjct: 87997 gaacctgcttatggagttgttagcattcaccatgttgggatcctatgtgaaaatcttgaa 87938

                               
Query: 166   aggtcnatggcattctac 183
             ||||| ||||| ||||||
Sbjct: 87937 aggtcaatggccttctac 87920



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                         
Query: 409   tacacactcagcaaatctgggcgtccagcgatctttgcacgagacccggatggaaacgcg 468
             |||||||| |||||||| ||||| ||||| || ||||| || |||||||| ||||| || 
Sbjct: 87005 tacacacttagcaaatcagggcgaccagcaatatttgctcgggacccggacggaaatgca 86946

                                  
Query: 469   ttggaatttacacaagtgtag 489
              |||| || ||||||||||||
Sbjct: 86945 ctggagttcacacaagtgtag 86925

to top

>gb|AY110157.1| Zea mays CL7807_-1 mRNA sequence
          Length = 672

 Score =  258 bits (130), Expect = 2e-65
 Identities = 321/387 (82%)
 Strand = Plus / Plus

                                                                       
Query: 106 gaacctgactatggagttgttagtatgcaccatgttggaatactatgtgaaaatcttgaa 165
           |||||||| ||||||||||| || || |||||||| || || || || || |||||||| 
Sbjct: 104 gaacctgattatggagttgtcagcattcaccatgtcgggatcctgtgcgagaatcttgag 163

                                                                       
Query: 166 aggtcnatggcattctaccaggacatccttggtctaaaggtgaatnctgctaggccaaat 225
           |||||  |||| |||||| ||||| | || ||||| | ||||||| | ||| ||||||| 
Sbjct: 164 aggtcactggcgttctacaaggacctactgggtctgagggtgaatccagctcggccaaac 223

                                                                       
Query: 226 gacaagcttccttacagaggtgcttggctctgggttggttctgagatgatccacttgatg 285
           |||||||| || ||||| || |||||||||||||| |||||||||||||||||| |||||
Sbjct: 224 gacaagctcccgtacaggggcgcttggctctgggtgggttctgagatgatccacctgatg 283

                                                                       
Query: 286 gagctgccaaatccggatccactgacaggacgcccagagcatggcgggcgtgatcgtcat 345
           |||||||| ||||| |||||  |||| |||||||| ||||| ||||| |||||||| |||
Sbjct: 284 gagctgccgaatcctgatccgttgaccggacgccccgagcacggcggacgtgatcggcat 343

                                                                       
Query: 346 acctgtatagcaatcagagatgtcttgaagttgaaagaaatctttgacaaagcggaaatc 405
           ||||||||||| || ||||||||  ||||| ||||||||      ||  |||| | ||||
Sbjct: 344 acctgtatagcgattagagatgttctgaagctgaaagaagnnnnngatgaagctggaatc 403

                                                                       
Query: 406 agctacacactcagcaaatctgggcgtccagcgatctttgcacgagacccggatggaaac 465
           ||||||||||| |||||||| ||| |  |||||||||||||| ||||||| || || |||
Sbjct: 404 agctacacactaagcaaatccgggagggcagcgatctttgcaagagacccagacgggaac 463

                                      
Query: 466 gcgttggaatttacacaagtgtagcaa 492
           |||||||| || || ||||||||||||
Sbjct: 464 gcgttggagttcacccaagtgtagcaa 490

to top

>dbj|AB088126.1| Oryza glumipatula DNA, retroposon p-SINE1-r807, repeat sequence
          Length = 588

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                       
Query: 106 gaacctgactatggagttgttagtatgcaccatgttggaatactatgtgaaaatcttgaa 165
           |||||||  |||||||||||||| || ||||||||||| || |||||||||||||| |||
Sbjct: 158 gaacctgcttatggagttgttagcattcaccatgttgggatcctatgtgaaaatctcgaa 99

                             
Query: 166 aggtcnatggcattctac 183
           ||||| ||||| ||||||
Sbjct: 98  aggtcaatggccttctac 81

to top

>dbj|AP006407.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT23O19, TM0297a,
             complete sequence
          Length = 61781

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                  
Query: 115   tatggagttgttagtatgcaccatgttggaatactatgtgaaaatcttgaaag 167
             ||||||||||||||||| |||||||||||||| ||||||||||| || |||||
Sbjct: 56693 tatggagttgttagtattcaccatgttggaattctatgtgaaaacctggaaag 56745



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                         
Query: 217   aggccaaatgacaagcttccttacagaggtgcttggctctgggttggttctgagatgatc 276
             |||||| |||| |||||||| ||||||||||||||| | ||||| || || |||||||| 
Sbjct: 56893 aggccacatgataagcttccatacagaggtgcttggttgtgggtaggctccgagatgatt 56952

                                    
Query: 277   cacttgatggagctgccaaatcc 299
             ||  |||||||||| ||||||||
Sbjct: 56953 catctgatggagcttccaaatcc 56975

to top

>gb|AC097174.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1111_A10,
             complete sequence
          Length = 155106

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 241   agaggtgcttggctctgggttggttctgagatgatccacttgatggag 288
             |||| ||||||||||||| ||||||| ||| ||||||| |||| ||||
Sbjct: 38848 agagatgcttggctctggattggttcagaggtgatccatttgacggag 38895

to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                               
Query: 241     agaggtgcttggctctgggttggttctgagatgatccacttgatggag 288
               |||| ||||||||||||| ||||||| ||| ||||||| |||| ||||
Sbjct: 5124345 agagatgcttggctctggattggttcagaggtgatccatttgacggag 5124392

to top

>ref|NM_125086.2| Arabidopsis thaliana catalytic/ lactoylglutathione lyase AT5G57040
           mRNA, complete cds
          Length = 854

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                       
Query: 226 gacaagcttccttacagaggtgcttggctctgggttggttctgagatgatccacttgatg 285
           ||||||||||| || ||||| || ||| | ||||| ||||| || ||||| ||  | |||
Sbjct: 461 gacaagcttccatatagaggagcatggttatgggtaggttcagaaatgattcatcttatg 520

                                
Query: 286 gagctgccaaatccggatcca 306
           ||||| |||||||| ||||||
Sbjct: 521 gagcttccaaatccagatcca 541

to top

>emb|Z47810.1|CEF45E10 Caenorhabditis elegans Cosmid F45E10, complete sequence
          Length = 17928

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   ttgttagtatgcaccatgttg 142
             |||||||||||||||||||||
Sbjct: 11724 ttgttagtatgcaccatgttg 11704

to top

>emb|AL365276.9| Human DNA sequence from clone RP11-274C15 on chromosome 6, complete
           sequence
          Length = 158737

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 222 aaatgacaagcttccttacagaggt 246
           |||||||||||||| ||||||||||
Sbjct: 741 aaatgacaagcttcattacagaggt 765

to top

>gb|BT024587.1| Arabidopsis thaliana At5g57040 mRNA, complete cds
          Length = 594

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                       
Query: 226 gacaagcttccttacagaggtgcttggctctgggttggttctgagatgatccacttgatg 285
           ||||||||||| || ||||| || ||| | ||||| ||||| || ||||| ||  | |||
Sbjct: 331 gacaagcttccatatagaggagcatggttatgggtaggttcagaaatgattcatcttatg 390

                                
Query: 286 gagctgccaaatccggatcca 306
           ||||| |||||||| ||||||
Sbjct: 391 gagcttccaaatccagatcca 411

to top

>gb|AY088499.1| Arabidopsis thaliana clone 7233 mRNA, complete sequence
          Length = 781

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                       
Query: 226 gacaagcttccttacagaggtgcttggctctgggttggttctgagatgatccacttgatg 285
           ||||||||||| || ||||| || ||| | ||||| ||||| || ||||| ||  | |||
Sbjct: 388 gacaagcttccatatagaggagcatggttatgggtaggttcagaaatgattcatcttatg 447

                                
Query: 286 gagctgccaaatccggatcca 306
           ||||| |||||||| ||||||
Sbjct: 448 gagcttccaaatccagatcca 468

to top

>dbj|AB024035.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17
          Length = 78423

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 66/81 (81%)
 Strand = Plus / Minus

                                                                         
Query: 226   gacaagcttccttacagaggtgcttggctctgggttggttctgagatgatccacttgatg 285
             ||||||||||| || ||||| || ||| | ||||| ||||| || ||||| ||  | |||
Sbjct: 68860 gacaagcttccatatagaggagcatggttatgggtaggttcagaaatgattcatcttatg 68801

                                  
Query: 286   gagctgccaaatccggatcca 306
             ||||| |||||||| ||||||
Sbjct: 68800 gagcttccaaatccagatcca 68780

to top

>gb|AC163032.5| Mus musculus BAC clone RP24-144G20 from chromosome 12, complete
             sequence
          Length = 186416

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   ttacagaggtgcttggctct 256
             ||||||||||||||||||||
Sbjct: 41521 ttacagaggtgcttggctct 41540

to top

>ref|NM_012761.1| Rattus norvegicus Sp4 transcription factor (Sp4), mRNA
          Length = 3489

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  ttacagaggtgcttggctct 256
            ||||||||||||||||||||
Sbjct: 2393 ttacagaggtgcttggctct 2412

to top

>ref|NM_009239.2| Mus musculus trans-acting transcription factor 4 (Sp4), mRNA
          Length = 5699

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  ttacagaggtgcttggctct 256
            ||||||||||||||||||||
Sbjct: 2382 ttacagaggtgcttggctct 2401

to top

>gb|BC076630.1| Mus musculus trans-acting transcription factor 4, mRNA (cDNA clone
            MGC:100176 IMAGE:30637762), complete cds
          Length = 5450

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  ttacagaggtgcttggctct 256
            ||||||||||||||||||||
Sbjct: 2377 ttacagaggtgcttggctct 2396

to top

>ref|XM_539462.2| PREDICTED: Canis familiaris similar to Sp4 transcription factor,
            transcript variant 1 (LOC482345), mRNA
          Length = 3021

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  ttacagaggtgcttggctct 256
            ||||||||||||||||||||
Sbjct: 2461 ttacagaggtgcttggctct 2480

to top

>ref|XM_857849.1| PREDICTED: Canis familiaris similar to Sp4 transcription factor,
            transcript variant 3 (LOC482345), mRNA
          Length = 2973

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  ttacagaggtgcttggctct 256
            ||||||||||||||||||||
Sbjct: 2413 ttacagaggtgcttggctct 2432

to top

>gb|AC134349.2| Homo sapiens 12 BAC RP11-785H5 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 38934

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 77   aggccctgacggccaaggag 96
            ||||||||||||||||||||
Sbjct: 6219 aggccctgacggccaaggag 6238

to top

>gb|AC007030.3| Homo sapiens PAC clone RP5-1112I4 from 7, complete sequence
          Length = 117853

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   ttgatggagctgccaaatcc 299
             ||||||||||||||||||||
Sbjct: 76150 ttgatggagctgccaaatcc 76131

to top

>gb|AC163034.4| Mus musculus BAC clone RP23-394C13 from chromosome 12, complete sequence
          Length = 187877

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    ttacagaggtgcttggctct 256
              ||||||||||||||||||||
Sbjct: 150777 ttacagaggtgcttggctct 150796

to top

>emb|AL589651.8| Mouse DNA sequence from clone RP23-138F20 on chromosome 13 Contains five
              genes for olfactory receptors, a novel gene, the H1f5 gene
              for H1 histone family member 5, three genes and one
              pseudogene for H2a histone family members, four genes for
              H2b, two genes for H4, and two genes for H3 histone family
              members and seven CpG islands, complete sequence
          Length = 222823

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 358    atcagagatgtcttgaagtt 377
              ||||||||||||||||||||
Sbjct: 211013 atcagagatgtcttgaagtt 211032

to top

>gb|AC135849.6| Pan troglodytes clone ptb-33n14, complete sequence
          Length = 72820

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 369  cttgaagttgaaagaaatct 388
            ||||||||||||||||||||
Sbjct: 6851 cttgaagttgaaagaaatct 6832

to top

>emb|CR602702.1| full-length cDNA clone CS0DI063YN06 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1018

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 77  aggccctgacggccaaggag 96
           ||||||||||||||||||||
Sbjct: 186 aggccctgacggccaaggag 167

to top

>emb|CR598768.1| full-length cDNA clone CS0DE005YD08 of Placenta of Homo sapiens
           (human)
          Length = 1891

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 77  aggccctgacggccaaggag 96
           ||||||||||||||||||||
Sbjct: 178 aggccctgacggccaaggag 159

to top

>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038
          Length = 1725576

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    ccaggacatccttggtctaa 202
              ||||||||||||||||||||
Sbjct: 750635 ccaggacatccttggtctaa 750654

to top

>gb|AC090338.6| Homo sapiens chromosome 18, clone RP11-704C2, complete sequence
          Length = 200525

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 370   ttgaagttgaaagaaatctt 389
             ||||||||||||||||||||
Sbjct: 87955 ttgaagttgaaagaaatctt 87974

to top

>gb|AC015617.8| Homo sapiens, clone RP11-45H23, complete sequence
          Length = 160541

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 370    ttgaagttgaaagaaatctt 389
              ||||||||||||||||||||
Sbjct: 157463 ttgaagttgaaagaaatctt 157444

to top

>gb|AC124172.4| Mus musculus BAC clone RP23-168P24 from chromosome 1, complete sequence
          Length = 192946

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 377   tgaaagaaatctttgacaaa 396
             ||||||||||||||||||||
Sbjct: 75681 tgaaagaaatctttgacaaa 75700

to top

>gb|AC000085.5| Homo sapiens Chromosome 22q11.2 BAC Clone 72f8 In DGCR Region, complete
             sequence
          Length = 100152

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   cttgaagttgaaagaaatct 388
             ||||||||||||||||||||
Sbjct: 86966 cttgaagttgaaagaaatct 86985

to top

>gb|AC000073.1| Homo sapiens Chromosome 22q11.2 Cosmid Clone 19d3 In DGCR Region,
             complete sequence
          Length = 39706

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   cttgaagttgaaagaaatct 388
             ||||||||||||||||||||
Sbjct: 22978 cttgaagttgaaagaaatct 22997

to top

>dbj|AB221633.1| Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12
            days
            neonate,strain=BALB/c),(tissue_type=testis,
            dev_stage=adult, strain=C57BL/6J), clone:V01Y034C09
          Length = 2349

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  ttacagaggtgcttggctct 256
            ||||||||||||||||||||
Sbjct: 2246 ttacagaggtgcttggctct 2265

to top

>ref|XM_579348.1| PREDICTED: Rattus norvegicus Sp4 transcription factor (Sp4), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  ttacagaggtgcttggctct 256
            ||||||||||||||||||||
Sbjct: 2362 ttacagaggtgcttggctct 2381

to top

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 326     atggcgggcgtgatcgtcat 345
               ||||||||||||||||||||
Sbjct: 1281062 atggcgggcgtgatcgtcat 1281043

to top

>emb|BX323818.8| Zebrafish DNA sequence from clone DKEY-48H7 in linkage group 4, complete
              sequence
          Length = 196712

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 240    cagaggtgcttggctctgggttgg 263
              |||| |||||||||||||||||||
Sbjct: 113937 cagatgtgcttggctctgggttgg 113914

to top

>gb|U62522.1|MMU62522 Mus musculus zinc finger transcription factor Sp4 mRNA, complete cds
          Length = 2678

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  ttacagaggtgcttggctct 256
            ||||||||||||||||||||
Sbjct: 2382 ttacagaggtgcttggctct 2401

to top

>emb|AL844592.6| Mouse DNA sequence from clone RP23-244J24 on chromosome 2, complete
             sequence
          Length = 197462

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 119   gagttgttagtatgcaccatgttg 142
             ||||||| ||||||||||||||||
Sbjct: 16399 gagttgtaagtatgcaccatgttg 16422

to top

>gb|U07610.1|SENDHF1B Rattus norvegicus Sprague-Dawley zinc finger protein (HF-1b) mRNA,
            complete cds
          Length = 3489

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  ttacagaggtgcttggctct 256
            ||||||||||||||||||||
Sbjct: 2393 ttacagaggtgcttggctct 2412


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,931,744
Number of Sequences: 3902068
Number of extensions: 3931744
Number of successful extensions: 65465
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65338
Number of HSP's gapped (non-prelim): 126
length of query: 505
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 483
effective length of database: 17,147,199,772
effective search space: 8282097489876
effective search space used: 8282097489876
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result