ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal35o15 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast pr... | 111 | 2e-24 | 2 | THF1_ARATH (Q9SKT0) Protein THYLAKOID FORMATION1, chloroplast pr... | 109 | 5e-24 | 3 | THF1_SOLTU (Q7XAB8) Protein THYLAKOID FORMATION1, chloroplast pr... | 104 | 2e-22 | 4 | THF1_SYNJB (P0C1D1) Protein thf1 | 64 | 3e-10 | 5 | THF1_SYNEL (Q8DJT8) Protein thf1 | 61 | 2e-09 | 6 | THF1_SYNJA (Q2JSQ3) Protein thf1 | 61 | 2e-09 | 7 | THF1_SYNY3 (P73956) Protein thf1 | 59 | 8e-09 | 8 | THF1_GLOVI (Q7NKS7) Protein thf1 | 58 | 2e-08 | 9 | THF1_ANASP (Q8YZ41) Protein thf1 | 57 | 3e-08 | 10 | THF1_SYNP7 (Q31MY4) Protein thf1 | 57 | 5e-08 | 11 | THF1_SYNP6 (Q5N664) Protein thf1 | 57 | 5e-08 | 12 | THF1_ANAVT (Q3M4B2) Protein thf1 | 56 | 7e-08 | 13 | THF1_SYNS9 (Q3AY05) Protein thf1 | 45 | 2e-04 | 14 | THF1_SYNPX (Q7U6N6) Protein thf1 | 44 | 3e-04 | 15 | THF1_PROMT (Q46L45) Protein thf1 | 43 | 6e-04 | 16 | THF1_PROMM (Q7V7R3) Protein thf1 | 42 | 0.002 | 17 | THF1_SYNSC (Q3AJN7) Protein thf1 | 42 | 0.002 |
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>THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 287 Score = 111 bits (277), Expect = 2e-24 Identities = 58/75 (77%), Positives = 61/75 (81%) Frame = +3 Query: 375 ARGIPCESARTTLQG*ILLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGF 554 A +P A T + LKSYKRPI SIYSTVLQELLVQQHLMRYK+TYQYD VFALGF Sbjct: 54 AGDVPPTVAETKMN---FLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALGF 110 Query: 555 VTVYDQLMEGYPSNE 599 VTVYDQLMEGYPSNE Sbjct: 111 VTVYDQLMEGYPSNE 125
>THF1_ARATH (Q9SKT0) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 300 Score = 109 bits (273), Expect = 5e-24 Identities = 50/57 (87%), Positives = 56/57 (98%) Frame = +3 Query: 429 LKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEGYPSNE 599 LK+YKRPIPSIY+TVLQEL+VQQHLMRYK TY+YDPVFALGFVTVYDQLMEGYPS++ Sbjct: 75 LKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVTVYDQLMEGYPSDQ 131
>THF1_SOLTU (Q7XAB8) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 293 Score = 104 bits (259), Expect = 2e-22 Identities = 47/57 (82%), Positives = 53/57 (92%) Frame = +3 Query: 429 LKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEGYPSNE 599 L +YKRPIP++Y+TVLQEL+VQQHL RYK +YQYDPVFALGFVTVYDQLMEGYPS E Sbjct: 76 LTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALGFVTVYDQLMEGYPSEE 132
>THF1_SYNJB (P0C1D1) Protein thf1| Length = 239 Score = 63.9 bits (154), Expect = 3e-10 Identities = 29/51 (56%), Positives = 37/51 (72%) Frame = +3 Query: 435 SYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEGY 587 +Y RPI ++Y V++ELLV+ HL ST+ YDP FALG VT+YD LME Y Sbjct: 17 AYPRPINAVYRRVVEELLVELHLTTVNSTFVYDPFFALGLVTLYDGLMEAY 67
>THF1_SYNEL (Q8DJT8) Protein thf1| Length = 222 Score = 61.2 bits (147), Expect = 2e-09 Identities = 27/51 (52%), Positives = 37/51 (72%) Frame = +3 Query: 435 SYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEGY 587 ++ RPI SIY ++ELLV+ HL+R ++Y P+FALG VT +DQ MEGY Sbjct: 17 AHTRPIHSIYRRFIEELLVEIHLLRVNVDFRYSPLFALGVVTAFDQFMEGY 67
>THF1_SYNJA (Q2JSQ3) Protein thf1| Length = 239 Score = 61.2 bits (147), Expect = 2e-09 Identities = 28/51 (54%), Positives = 35/51 (68%) Frame = +3 Query: 435 SYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEGY 587 +Y RPI + Y V++ELLV+ HL S + YDP FALG VT+YD LME Y Sbjct: 17 AYPRPINAAYRRVVEELLVELHLTTVNSAFVYDPFFALGLVTLYDSLMEAY 67
>THF1_SYNY3 (P73956) Protein thf1| Length = 240 Score = 59.3 bits (142), Expect = 8e-09 Identities = 26/54 (48%), Positives = 35/54 (64%) Frame = +3 Query: 438 YKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEGYPSNE 599 Y RPI SIY ++ELLV+ HL+ + YDP+FALG VT ++ M+GY E Sbjct: 18 YSRPISSIYRRFVEELLVEMHLLSVNIDFTYDPIFALGIVTSFNSFMQGYQPAE 71
>THF1_GLOVI (Q7NKS7) Protein thf1| Length = 228 Score = 57.8 bits (138), Expect = 2e-08 Identities = 25/51 (49%), Positives = 35/51 (68%) Frame = +3 Query: 435 SYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEGY 587 +Y RP+ SIY V+ ELLV+ HL+ +++DP+FA G +T Y LMEGY Sbjct: 17 AYPRPVNSIYRRVIDELLVEVHLLITNQDFRHDPLFATGLLTAYQALMEGY 67
>THF1_ANASP (Q8YZ41) Protein thf1| Length = 233 Score = 57.4 bits (137), Expect = 3e-08 Identities = 23/50 (46%), Positives = 36/50 (72%) Frame = +3 Query: 438 YKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEGY 587 + RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +D+ MEGY Sbjct: 18 HTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMEGY 67
>THF1_SYNP7 (Q31MY4) Protein thf1| Length = 254 Score = 56.6 bits (135), Expect = 5e-08 Identities = 24/51 (47%), Positives = 35/51 (68%) Frame = +3 Query: 435 SYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEGY 587 +Y RPI +Y V++ELLV+ HL+ +++ YDP+FALG VT +D M Y Sbjct: 17 AYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFMSSY 67
>THF1_SYNP6 (Q5N664) Protein thf1| Length = 254 Score = 56.6 bits (135), Expect = 5e-08 Identities = 24/51 (47%), Positives = 35/51 (68%) Frame = +3 Query: 435 SYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEGY 587 +Y RPI +Y V++ELLV+ HL+ +++ YDP+FALG VT +D M Y Sbjct: 17 AYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFMSSY 67
>THF1_ANAVT (Q3M4B2) Protein thf1| Length = 233 Score = 56.2 bits (134), Expect = 7e-08 Identities = 22/50 (44%), Positives = 36/50 (72%) Frame = +3 Query: 438 YKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEGY 587 + RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +D+ M+GY Sbjct: 18 HTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMQGY 67
>THF1_SYNS9 (Q3AY05) Protein thf1| Length = 215 Score = 44.7 bits (104), Expect = 2e-04 Identities = 19/56 (33%), Positives = 34/56 (60%) Frame = +3 Query: 432 KSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEGYPSNE 599 +++ I +Y + ELLV+ HL+ ++S+++ P+FA+G TV+D GY E Sbjct: 16 QAFPHVIAPLYRRLADELLVELHLLSHQSSFKTTPLFAVGLCTVFDTFSAGYRPEE 71
>THF1_SYNPX (Q7U6N6) Protein thf1| Length = 212 Score = 44.3 bits (103), Expect = 3e-04 Identities = 17/52 (32%), Positives = 35/52 (67%) Frame = +3 Query: 432 KSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEGY 587 +++ I +Y + ELLV+ HL+ +++T+Q + +FA+G TV+++ +GY Sbjct: 16 QAFPHVIAPLYRRIADELLVELHLLSHQATFQANSLFAVGLKTVFERFTQGY 67
>THF1_PROMT (Q46L45) Protein thf1| Length = 199 Score = 43.1 bits (100), Expect = 6e-04 Identities = 18/56 (32%), Positives = 32/56 (57%) Frame = +3 Query: 432 KSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEGYPSNE 599 K + IP+IY + ELLV+ HL+ ++ ++ D +F+ G V+ + GY +E Sbjct: 16 KEFPYVIPAIYRKLADELLVELHLLSHQKNFKKDSIFSTGLKEVFSKFTSGYKPSE 71
>THF1_PROMM (Q7V7R3) Protein thf1| Length = 243 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/46 (39%), Positives = 27/46 (58%) Frame = +3 Query: 450 IPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEGY 587 IPS+Y ELLV+ HL+ ++ + D +FA+G V+D GY Sbjct: 22 IPSLYRRTTDELLVELHLLSHQKHFHPDALFAIGLSQVFDVFTSGY 67
>THF1_SYNSC (Q3AJN7) Protein thf1| Length = 215 Score = 41.6 bits (96), Expect = 0.002 Identities = 16/52 (30%), Positives = 34/52 (65%) Frame = +3 Query: 432 KSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEGY 587 +++ I +Y + ELLV+ HL+ ++S ++ + +F++G TV+D ++GY Sbjct: 16 QAFPHVIAPLYRRLADELLVELHLLSHQSRFEANELFSVGLCTVFDTFIKGY 67 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,425,525 Number of Sequences: 219361 Number of extensions: 1560535 Number of successful extensions: 3366 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3274 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3364 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
