>EXEC1_ARATH (Q93YW0) EXECUTER1 protein, chloroplast precursor|
          Length = 684

 Score =  187 bits (476), Expect = 1e-47
 Identities = 90/161 (55%), Positives = 118/161 (73%), Gaps = 6/161 (3%)
 Frame = +2

Query: 95  WSWERWKQHFALVQESERLVDELQLQLRTAVCREDYRSAHKLKLAIAATSRNDTVGRAVS 274
           W W+RWK+HF  V + +RL+  L+ QL  A+ REDY  A +LK+AIAAT+ ND VG+ +S
Sbjct: 111 WDWDRWKKHFDQVDDQDRLLSVLKSQLNRAIKREDYEDAARLKVAIAATATNDAVGKVMS 170

Query: 275 ELHRAIEEERYLDAAYIRDHAGAGLLGWWSGISESVSDPYGLIIRISAEHGRYVAKSYDI 454
             +RA+ EERY DA Y+RD AGAGL+GWWSGISE V DP+GLI++I+AEHGRYVA+SY+ 
Sbjct: 171 TFYRALLEERYKDAVYLRDKAGAGLVGWWSGISEDVKDPFGLIVQITAEHGRYVARSYNP 230

Query: 455 RQLASDGHGYPIFEIYFA-EANGGYNLQAVHLK-----PDV 559
           RQL++   G P+FEI+   +  G Y  QAV+LK     PDV
Sbjct: 231 RQLSTSAAGAPLFEIFLTLDGKGNYKKQAVYLKWKEIFPDV 271

>CLPB_STRAL (Q9Z6E4) Chaperone clpB|
          Length = 857

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 6/130 (4%)
 Frame = +2

Query: 101 WERWKQHFALVQESERLVDELQLQLRTAVCREDYRSAHKLKLAIAATSRNDTVGRAVSEL 280
           WE+ KQ    V E +  +DEL+ Q   A    D+ +A KL      T   D         
Sbjct: 462 WEKEKQSLNRVGELKERLDELRGQAERAQQHGDFDTASKLLYGEIPTLERDL-------R 514

Query: 281 HRAIEEERYLDAAYIRDHAG----AGLLGWWSGI--SESVSDPYGLIIRISAEHGRYVAK 442
            R  EEE   D   +++  G    A ++G W+GI     +      ++R+ AE GR +  
Sbjct: 515 WRPAEEEAAKD-TMVKEEVGPDDIADVVGSWTGIPAGRLLEGETQKLLRMEAELGRRLIG 573

Query: 443 SYDIRQLASD 472
             +  Q  SD
Sbjct: 574 QSEAVQAVSD 583

>KGUA_THETN (Q8R9S6) Guanylate kinase (EC 2.7.4.8) (GMP kinase)|
          Length = 206

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
 Frame = +2

Query: 185 VCREDYRSAHKLKLAIAATSRNDTVG---------RAVSELHRAIEEERYLDAAYIRDH 334
           +C+        LKL+I+AT+R    G         ++  E  R IEE+ +L+ A + DH
Sbjct: 23  ICKALIEKEKDLKLSISATTRQPRAGEVDGKNYFFKSEEEFKRMIEEDAFLEWAKVYDH 81

>K0562_MOUSE (Q80V31) Protein KIAA0562|
          Length = 926

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +2

Query: 122 FALVQESE--RLVDELQLQLRTAVCREDYRSAHKLKLAIAATSR-NDTVGRAVSELHRAI 292
           F + Q+ E  +++  L  + R AV +E Y  A KLK AIA   +  + +GR   E   A+
Sbjct: 205 FDMYQDPEVAQIIRRLDERKREAVKKERYDHAKKLKQAIADLQKVGERLGRYEVEKRCAV 264

Query: 293 EEERY 307
           E+E Y
Sbjct: 265 EKEDY 269

>K0562_HUMAN (O60308) Protein KIAA0562|
          Length = 925

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +2

Query: 122 FALVQESE--RLVDELQLQLRTAVCREDYRSAHKLKLAIAATSR-NDTVGRAVSELHRAI 292
           F + Q+ E  +++ +L  + R AV +E Y  A KLK AIA   +  + +GR   E   A+
Sbjct: 202 FDMYQDPEVAQIIRKLDERKREAVQKERYDYAKKLKQAIADLQKVGERLGRYEVEKRCAV 261

Query: 293 EEERY 307
           E+E Y
Sbjct: 262 EKEDY 266

>PME3_CITSI (P83948) Pectinesterase-3 precursor (EC 3.1.1.11) (Pectin|
           methylesterase 3) (PE 3)
          Length = 584

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
 Frame = +2

Query: 140 SERLVDELQLQLRTAVCREDYRSAHKLKLAIAATSRN--------DTVGRAVSELHRAIE 295
           S++ V E+ L + T     +Y    KL      T R         +T+   + ELH+A+E
Sbjct: 98  SQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVE 157

Query: 296 E-ERYLDAAYIRDHA 337
           + E Y +   +  HA
Sbjct: 158 DLEEYPNKKSLSQHA 172

>PME1_CITSI (O04886) Pectinesterase-1 precursor (EC 3.1.1.11) (Pectin|
           methylesterase) (PE)
          Length = 584

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
 Frame = +2

Query: 140 SERLVDELQLQLRTAVCREDYRSAHKLKLAIAATSRN--------DTVGRAVSELHRAIE 295
           S++ V E+ L + T     +Y    KL      T R         +T+   + ELH+A+E
Sbjct: 98  SQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVE 157

Query: 296 E-ERYLDAAYIRDHA 337
           + E Y +   +  HA
Sbjct: 158 DLEEYPNKKSLSQHA 172

>Y2191_MYCTU (Q10384) Hypothetical protein Rv2191/MT2247|
          Length = 645

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 17/61 (27%), Positives = 23/61 (37%)
 Frame = +2

Query: 185 VCREDYRSAHKLKLAIAATSRNDTVGRAVSELHRAIEEERYLDAAYIRDHAGAGLLGWWS 364
           V    Y  A     A+     N  +  AV ++    E  RY  AA +RDH    +   W 
Sbjct: 412 VTAAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWH 471

Query: 365 G 367
           G
Sbjct: 472 G 472

>SHP_RAT (P97947) Nuclear receptor 0B2 (Orphan nuclear receptor SHP) (Small|
           heterodimer partner)
          Length = 260

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
 Frame = -1

Query: 553 WFQMHCLQVISSICLCKINFEY-RVTMAI*SQLPDIITFCHVSTMFSAYTDYKTIWIRHT 377
           W Q HCL+   S+ L    + Y + T+     +P +   CH+     A+   +  W    
Sbjct: 151 WLQ-HCLESFWSLELGPKEYAYLKGTILFNPDVPGLHASCHI-----AHLQQEAHWALCE 204

Query: 376 FRNPRPPSQQS-------CTSVVSNISCIQIALLFYGPM 281
              P  P+ Q          S + NISC  +  LF+ P+
Sbjct: 205 VLEPWYPASQGRLARILLMASTLKNISCTLLVDLFFRPV 243


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,340,007
Number of Sequences: 219361
Number of extensions: 1400361
Number of successful extensions: 3662
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3660
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)