ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal35m10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB227753.1| Aspergillus oryzae cDNA, contig sequence: AoEST4626 48 0.037
2gb|DQ378988.1| Carassius auratus gibelio clone CX-J1-38 microsat... 44 0.57
3emb|AL732438.17| Mouse DNA sequence from clone RP23-317K5 on chr... 42 2.3
4gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 2.3
5gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 8.9
6gb|AC151571.1| Latimeria menadoensis clone VMRC4-140H19, complet... 40 8.9
7ref|XM_422476.1| PREDICTED: Gallus gallus similar to The KIAA019... 40 8.9
8gb|AE007299.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 8.9
9ref|XM_567679.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 8.9
10emb|Z82200.1|HS333E23 Human DNA sequence from clone RP3-333E23 o... 40 8.9
11emb|AL591719.8| Human DNA sequence from clone RP11-293A10 on chr... 40 8.9
12emb|AL356968.41| Human DNA sequence from clone RP11-329A14 on ch... 40 8.9
13gb|AC126365.5| Homo sapiens chromosome 17, clone RP11-283C24, co... 40 8.9
14gb|AC151267.3| Mus musculus BAC clone RP24-296E22 from chromosom... 40 8.9
15emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 8.9
16emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4,... 40 8.9
17gb|AC090774.6| Homo sapiens chromosome 17, clone RP11-344E13, co... 40 8.9
18gb|AC090679.5| Homo sapiens 12 BAC RP11-80O3 (Roswell Park Cance... 40 8.9
19gb|AC091208.4| Drosophila melanogaster 3L BAC RP98-46N3 (Roswell... 40 8.9
20gb|AF509533.1| Aegilops tauschii putative NBS-LRR resistance pro... 40 8.9
21gb|AC010716.4| Drosophila melanogaster 3L BAC RP98-11A21 (Roswel... 40 8.9
22gb|AC107386.5| Homo sapiens BAC clone RP11-288G15 from 4, comple... 40 8.9
23gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold 40 8.9
24ref|NM_139739.1| Drosophila melanogaster CG5592-RA (CG5592), mRNA 40 8.9
25gb|AC095066.4| Homo sapiens BAC clone RP11-651B17 from 4, comple... 40 8.9
26gb|AC073855.5| Homo sapiens BAC clone RP11-799A12 from 4, comple... 40 8.9
27emb|BX649371.6| Zebrafish DNA sequence from clone CH211-163G19 i... 40 8.9
28gb|BT022897.1| Drosophila melanogaster IP12546 full insert cDNA 40 8.9
29dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
30gb|AC103591.3| Homo sapiens chromosome 1 clone RP11-386I14, comp... 40 8.9
31gb|AC127512.11| Homo sapiens chromosome 17, clone RP13-72M22, co... 40 8.9
32emb|AL954688.9| Zebrafish DNA sequence from clone CH211-212L1 in... 40 8.9
33emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 8.9
34gb|AC004168.2|AC004168 Homo sapiens chromosome 4 clone B159L21 m... 40 8.9
35gb|AE003564.3| Drosophila melanogaster chromosome 3L, section 21... 40 8.9
36gb|AC152984.2| Mus musculus 6 BAC RP23-462B3 (Roswell Park Cance... 40 8.9
37gb|AC149878.2| Xenopus tropicalis clone CH216-26P2, complete seq... 40 8.9
38emb|AL669956.10| Mouse DNA sequence from clone RP23-222I1 on chr... 40 8.9

>dbj|AB227753.1| Aspergillus oryzae cDNA, contig sequence: AoEST4626
          Length = 1021

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  attcggcacgaggctcaaggatct 24
          ||||||||||||||||||||||||
Sbjct: 2  attcggcacgaggctcaaggatct 25



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>gb|DQ378988.1| Carassius auratus gibelio clone CX-J1-38 microsatellite sequence
          Length = 241

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 517 aggtcacaacttccatgctcgg 538
           ||||||||||||||||||||||
Sbjct: 58  aggtcacaacttccatgctcgg 79



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>emb|AL732438.17| Mouse DNA sequence from clone RP23-317K5 on chromosome X, complete
             sequence
          Length = 157834

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 615   ttcattggcatcctccttgtgcaag 639
             |||||||||||||||||||| ||||
Sbjct: 96609 ttcattggcatcctccttgttcaag 96585



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 533     gctcggcatcctgctcctgga 553
               |||||||||||||||||||||
Sbjct: 1923675 gctcggcatcctgctcctgga 1923695



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>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete
              sequence
          Length = 1019846

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 551    ggactaccaggtcaagggtt 570
              ||||||||||||||||||||
Sbjct: 608049 ggactaccaggtcaagggtt 608068



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>gb|AC151571.1| Latimeria menadoensis clone VMRC4-140H19, complete sequence
          Length = 187392

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    aaaatacaagaaattggggg 360
              ||||||||||||||||||||
Sbjct: 128348 aaaatacaagaaattggggg 128329



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>ref|XM_422476.1| PREDICTED: Gallus gallus similar to The KIAA0191 gene is expressed
           ubiquitously.~The KIAA0191 protein retains the C2H2
           zinc-finger at its N-terminal region. (LOC424642), mRNA
          Length = 2652

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 ttgcaaagatattaaaagtg 133
           ||||||||||||||||||||
Sbjct: 732 ttgcaaagatattaaaagtg 751



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>gb|AE007299.1| Sinorhizobium meliloti 1021 plasmid pSymA section 105 of 121 of the
            complete plasmid sequence
          Length = 14409

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 532  tgctcggcatcctgctcctg 551
            ||||||||||||||||||||
Sbjct: 8814 tgctcggcatcctgctcctg 8795



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>ref|XM_567679.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNK02030) partial mRNA
          Length = 5136

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 551  ggactaccaggtcaagggtt 570
            ||||||||||||||||||||
Sbjct: 2085 ggactaccaggtcaagggtt 2104



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>emb|Z82200.1|HS333E23 Human DNA sequence from clone RP3-333E23 on chromosome Xq21.1 Contains
             the P2RY10 gene for purinergic receptor P2Y G-protein
             coupled 10, complete sequence
          Length = 128011

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    taatttctctgtgcttgaat 73
             ||||||||||||||||||||
Sbjct: 35307 taatttctctgtgcttgaat 35288



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>emb|AL591719.8| Human DNA sequence from clone RP11-293A10 on chromosome 1 Contains the
             3' end of a novel gene (FLJ10330), a novel gene
             (FLJ35838), the 5' end of the STXBP3 gene for syntaxin
             binding protein 3, a novel gene and a chromosome 20 open
             reading frame 147 (C20orf147) pseudogene, complete
             sequence
          Length = 96417

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   atacatgtatttatgtatgt 187
             ||||||||||||||||||||
Sbjct: 87325 atacatgtatttatgtatgt 87344



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>emb|AL356968.41| Human DNA sequence from clone RP11-329A14 on chromosome 1 Contains the 5'
              end of the SPATA6 gene for spermatogenesis associated 6, an
              amyotrophic lateral sclerosis 2 (juvenile) chromosome
              region, candidate 2 (ALS2CR2) pseudogene, a ribosomal
              protein L21 (RPL21) pseudogene and a CpG island, complete
              sequence
          Length = 173373

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 590    catgctccagattgtcaagg 609
              ||||||||||||||||||||
Sbjct: 118653 catgctccagattgtcaagg 118634



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>gb|AC126365.5| Homo sapiens chromosome 17, clone RP11-283C24, complete sequence
          Length = 194265

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 168    atacatgtatttatgtatgt 187
              ||||||||||||||||||||
Sbjct: 169951 atacatgtatttatgtatgt 169970



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>gb|AC151267.3| Mus musculus BAC clone RP24-296E22 from chromosome 17, complete
             sequence
          Length = 169816

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   atacatgtatttatgtatgt 187
             ||||||||||||||||||||
Sbjct: 94525 atacatgtatttatgtatgt 94544



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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 529     ccatgctcggcatcctgctc 548
               ||||||||||||||||||||
Sbjct: 4004870 ccatgctcggcatcctgctc 4004889



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>emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A11,
              complete sequence
          Length = 127419

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    taaacacaagcaacggagag 328
              ||||||||||||||||||||
Sbjct: 122279 taaacacaagcaacggagag 122298



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>gb|AC090774.6| Homo sapiens chromosome 17, clone RP11-344E13, complete sequence
          Length = 207418

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    atacatgtatttatgtatgt 187
              ||||||||||||||||||||
Sbjct: 188883 atacatgtatttatgtatgt 188864



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>gb|AC090679.5| Homo sapiens 12 BAC RP11-80O3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 156596

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   tagaagatgatacatgtatt 178
             ||||||||||||||||||||
Sbjct: 23815 tagaagatgatacatgtatt 23834



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>gb|AC091208.4| Drosophila melanogaster 3L BAC RP98-46N3 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 182705

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   aaagtgaacaaaagaatcgg 147
             ||||||||||||||||||||
Sbjct: 12912 aaagtgaacaaaagaatcgg 12931



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>gb|AF509533.1| Aegilops tauschii putative NBS-LRR resistance protein gene, complete
            cds
          Length = 6256

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 529  ccatgctcggcatcctgctc 548
            ||||||||||||||||||||
Sbjct: 1386 ccatgctcggcatcctgctc 1405



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>gb|AC010716.4| Drosophila melanogaster 3L BAC RP98-11A21 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 173386

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    aaagtgaacaaaagaatcgg 147
              ||||||||||||||||||||
Sbjct: 104155 aaagtgaacaaaagaatcgg 104174



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>gb|AC107386.5| Homo sapiens BAC clone RP11-288G15 from 4, complete sequence
          Length = 5357

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 603  gtcaaggtgtctttcattgg 622
            ||||||||||||||||||||
Sbjct: 3831 gtcaaggtgtctttcattgg 3850



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>gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold
          Length = 527158

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 191    gggcagaaggagataataac 210
              ||||||||||||||||||||
Sbjct: 195005 gggcagaaggagataataac 194986



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>ref|NM_139739.1| Drosophila melanogaster CG5592-RA (CG5592), mRNA
          Length = 1623

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 aaagtgaacaaaagaatcgg 147
           ||||||||||||||||||||
Sbjct: 197 aaagtgaacaaaagaatcgg 216



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>gb|AC095066.4| Homo sapiens BAC clone RP11-651B17 from 4, complete sequence
          Length = 97734

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   agcaaaaatagaagatgata 170
             ||||||||||||||||||||
Sbjct: 46339 agcaaaaatagaagatgata 46320



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>gb|AC073855.5| Homo sapiens BAC clone RP11-799A12 from 4, complete sequence
          Length = 193024

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   ttaaaagtgaacaaaagaat 144
             ||||||||||||||||||||
Sbjct: 82068 ttaaaagtgaacaaaagaat 82049



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>emb|BX649371.6| Zebrafish DNA sequence from clone CH211-163G19 in linkage group 3,
             complete sequence
          Length = 151254

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 329   ataagtattgacaaaatacaagaa 352
             |||||||||||||||||| |||||
Sbjct: 88092 ataagtattgacaaaataaaagaa 88115



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>gb|BT022897.1| Drosophila melanogaster IP12546 full insert cDNA
          Length = 1648

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 aaagtgaacaaaagaatcgg 147
           ||||||||||||||||||||
Sbjct: 207 aaagtgaacaaaagaatcgg 226



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 309     taaacacaagcaacggagag 328
               ||||||||||||||||||||
Sbjct: 3532984 taaacacaagcaacggagag 3533003



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>gb|AC103591.3| Homo sapiens chromosome 1 clone RP11-386I14, complete sequence
          Length = 152117

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   aaaaatatggtttctggaaa 238
             ||||||||||||||||||||
Sbjct: 97009 aaaaatatggtttctggaaa 96990



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>gb|AC127512.11| Homo sapiens chromosome 17, clone RP13-72M22, complete sequence
          Length = 146455

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 168    atacatgtatttatgtatgt 187
              ||||||||||||||||||||
Sbjct: 123308 atacatgtatttatgtatgt 123327



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>emb|AL954688.9| Zebrafish DNA sequence from clone CH211-212L1 in linkage group 4,
              complete sequence
          Length = 210027

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 161    gaagatgatacatgtatttatgta 184
              |||||| |||||||||||||||||
Sbjct: 151390 gaagatcatacatgtatttatgta 151367



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>emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0413E07, complete
             sequence
          Length = 76546

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   gatacaaaccaagactcatt 273
             ||||||||||||||||||||
Sbjct: 39011 gatacaaaccaagactcatt 38992



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>gb|AC004168.2|AC004168 Homo sapiens chromosome 4 clone B159L21 map 4q25, complete sequence
          Length = 185566

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 603 gtcaaggtgtctttcattgg 622
           ||||||||||||||||||||
Sbjct: 474 gtcaaggtgtctttcattgg 493



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>gb|AE003564.3| Drosophila melanogaster chromosome 3L, section 21 of 83 of the complete
             sequence
          Length = 315944

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   aaagtgaacaaaagaatcgg 147
             ||||||||||||||||||||
Sbjct: 84255 aaagtgaacaaaagaatcgg 84274



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>gb|AC152984.2| Mus musculus 6 BAC RP23-462B3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 185001

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   aaagatattaaaagtgaaca 137
             ||||||||||||||||||||
Sbjct: 44470 aaagatattaaaagtgaaca 44451



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>gb|AC149878.2| Xenopus tropicalis clone CH216-26P2, complete sequence
          Length = 185685

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    atacatgtatttatgtatgt 187
              ||||||||||||||||||||
Sbjct: 180452 atacatgtatttatgtatgt 180433



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>emb|AL669956.10| Mouse DNA sequence from clone RP23-222I1 on chromosome X, complete
             sequence
          Length = 199434

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 52    ggtaatttctctgtgcttgaatgt 75
             ||||||||||||||||||| ||||
Sbjct: 42691 ggtaatttctctgtgcttggatgt 42714


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,283,762
Number of Sequences: 3902068
Number of extensions: 6283762
Number of successful extensions: 138557
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 138405
Number of HSP's gapped (non-prelim): 152
length of query: 655
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 632
effective length of database: 17,143,297,704
effective search space: 10834564148928
effective search space used: 10834564148928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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