| Clone Name | baal35m10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB227753.1| Aspergillus oryzae cDNA, contig sequence: AoEST4626 Length = 1021 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Plus Query: 1 attcggcacgaggctcaaggatct 24 |||||||||||||||||||||||| Sbjct: 2 attcggcacgaggctcaaggatct 25
>gb|DQ378988.1| Carassius auratus gibelio clone CX-J1-38 microsatellite sequence Length = 241 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 517 aggtcacaacttccatgctcgg 538 |||||||||||||||||||||| Sbjct: 58 aggtcacaacttccatgctcgg 79
>emb|AL732438.17| Mouse DNA sequence from clone RP23-317K5 on chromosome X, complete sequence Length = 157834 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 615 ttcattggcatcctccttgtgcaag 639 |||||||||||||||||||| |||| Sbjct: 96609 ttcattggcatcctccttgttcaag 96585
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 533 gctcggcatcctgctcctgga 553 ||||||||||||||||||||| Sbjct: 1923675 gctcggcatcctgctcctgga 1923695
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete sequence Length = 1019846 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 ggactaccaggtcaagggtt 570 |||||||||||||||||||| Sbjct: 608049 ggactaccaggtcaagggtt 608068
>gb|AC151571.1| Latimeria menadoensis clone VMRC4-140H19, complete sequence Length = 187392 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 aaaatacaagaaattggggg 360 |||||||||||||||||||| Sbjct: 128348 aaaatacaagaaattggggg 128329
>ref|XM_422476.1| PREDICTED: Gallus gallus similar to The KIAA0191 gene is expressed ubiquitously.~The KIAA0191 protein retains the C2H2 zinc-finger at its N-terminal region. (LOC424642), mRNA Length = 2652 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ttgcaaagatattaaaagtg 133 |||||||||||||||||||| Sbjct: 732 ttgcaaagatattaaaagtg 751
>gb|AE007299.1| Sinorhizobium meliloti 1021 plasmid pSymA section 105 of 121 of the complete plasmid sequence Length = 14409 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 532 tgctcggcatcctgctcctg 551 |||||||||||||||||||| Sbjct: 8814 tgctcggcatcctgctcctg 8795
>ref|XM_567679.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNK02030) partial mRNA Length = 5136 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 ggactaccaggtcaagggtt 570 |||||||||||||||||||| Sbjct: 2085 ggactaccaggtcaagggtt 2104
>emb|Z82200.1|HS333E23 Human DNA sequence from clone RP3-333E23 on chromosome Xq21.1 Contains the P2RY10 gene for purinergic receptor P2Y G-protein coupled 10, complete sequence Length = 128011 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 taatttctctgtgcttgaat 73 |||||||||||||||||||| Sbjct: 35307 taatttctctgtgcttgaat 35288
>emb|AL591719.8| Human DNA sequence from clone RP11-293A10 on chromosome 1 Contains the 3' end of a novel gene (FLJ10330), a novel gene (FLJ35838), the 5' end of the STXBP3 gene for syntaxin binding protein 3, a novel gene and a chromosome 20 open reading frame 147 (C20orf147) pseudogene, complete sequence Length = 96417 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atacatgtatttatgtatgt 187 |||||||||||||||||||| Sbjct: 87325 atacatgtatttatgtatgt 87344
>emb|AL356968.41| Human DNA sequence from clone RP11-329A14 on chromosome 1 Contains the 5' end of the SPATA6 gene for spermatogenesis associated 6, an amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 2 (ALS2CR2) pseudogene, a ribosomal protein L21 (RPL21) pseudogene and a CpG island, complete sequence Length = 173373 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 590 catgctccagattgtcaagg 609 |||||||||||||||||||| Sbjct: 118653 catgctccagattgtcaagg 118634
>gb|AC126365.5| Homo sapiens chromosome 17, clone RP11-283C24, complete sequence Length = 194265 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atacatgtatttatgtatgt 187 |||||||||||||||||||| Sbjct: 169951 atacatgtatttatgtatgt 169970
>gb|AC151267.3| Mus musculus BAC clone RP24-296E22 from chromosome 17, complete sequence Length = 169816 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atacatgtatttatgtatgt 187 |||||||||||||||||||| Sbjct: 94525 atacatgtatttatgtatgt 94544
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 ccatgctcggcatcctgctc 548 |||||||||||||||||||| Sbjct: 4004870 ccatgctcggcatcctgctc 4004889
>emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A11, complete sequence Length = 127419 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 taaacacaagcaacggagag 328 |||||||||||||||||||| Sbjct: 122279 taaacacaagcaacggagag 122298
>gb|AC090774.6| Homo sapiens chromosome 17, clone RP11-344E13, complete sequence Length = 207418 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 atacatgtatttatgtatgt 187 |||||||||||||||||||| Sbjct: 188883 atacatgtatttatgtatgt 188864
>gb|AC090679.5| Homo sapiens 12 BAC RP11-80O3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156596 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 tagaagatgatacatgtatt 178 |||||||||||||||||||| Sbjct: 23815 tagaagatgatacatgtatt 23834
>gb|AC091208.4| Drosophila melanogaster 3L BAC RP98-46N3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 182705 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aaagtgaacaaaagaatcgg 147 |||||||||||||||||||| Sbjct: 12912 aaagtgaacaaaagaatcgg 12931
>gb|AF509533.1| Aegilops tauschii putative NBS-LRR resistance protein gene, complete cds Length = 6256 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 ccatgctcggcatcctgctc 548 |||||||||||||||||||| Sbjct: 1386 ccatgctcggcatcctgctc 1405
>gb|AC010716.4| Drosophila melanogaster 3L BAC RP98-11A21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 173386 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aaagtgaacaaaagaatcgg 147 |||||||||||||||||||| Sbjct: 104155 aaagtgaacaaaagaatcgg 104174
>gb|AC107386.5| Homo sapiens BAC clone RP11-288G15 from 4, complete sequence Length = 5357 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 603 gtcaaggtgtctttcattgg 622 |||||||||||||||||||| Sbjct: 3831 gtcaaggtgtctttcattgg 3850
>gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold Length = 527158 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 gggcagaaggagataataac 210 |||||||||||||||||||| Sbjct: 195005 gggcagaaggagataataac 194986
>ref|NM_139739.1| Drosophila melanogaster CG5592-RA (CG5592), mRNA Length = 1623 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aaagtgaacaaaagaatcgg 147 |||||||||||||||||||| Sbjct: 197 aaagtgaacaaaagaatcgg 216
>gb|AC095066.4| Homo sapiens BAC clone RP11-651B17 from 4, complete sequence Length = 97734 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 agcaaaaatagaagatgata 170 |||||||||||||||||||| Sbjct: 46339 agcaaaaatagaagatgata 46320
>gb|AC073855.5| Homo sapiens BAC clone RP11-799A12 from 4, complete sequence Length = 193024 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ttaaaagtgaacaaaagaat 144 |||||||||||||||||||| Sbjct: 82068 ttaaaagtgaacaaaagaat 82049
>emb|BX649371.6| Zebrafish DNA sequence from clone CH211-163G19 in linkage group 3, complete sequence Length = 151254 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 ataagtattgacaaaatacaagaa 352 |||||||||||||||||| ||||| Sbjct: 88092 ataagtattgacaaaataaaagaa 88115
>gb|BT022897.1| Drosophila melanogaster IP12546 full insert cDNA Length = 1648 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aaagtgaacaaaagaatcgg 147 |||||||||||||||||||| Sbjct: 207 aaagtgaacaaaagaatcgg 226
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 taaacacaagcaacggagag 328 |||||||||||||||||||| Sbjct: 3532984 taaacacaagcaacggagag 3533003
>gb|AC103591.3| Homo sapiens chromosome 1 clone RP11-386I14, complete sequence Length = 152117 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 aaaaatatggtttctggaaa 238 |||||||||||||||||||| Sbjct: 97009 aaaaatatggtttctggaaa 96990
>gb|AC127512.11| Homo sapiens chromosome 17, clone RP13-72M22, complete sequence Length = 146455 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atacatgtatttatgtatgt 187 |||||||||||||||||||| Sbjct: 123308 atacatgtatttatgtatgt 123327
>emb|AL954688.9| Zebrafish DNA sequence from clone CH211-212L1 in linkage group 4, complete sequence Length = 210027 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 gaagatgatacatgtatttatgta 184 |||||| ||||||||||||||||| Sbjct: 151390 gaagatcatacatgtatttatgta 151367
>emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0413E07, complete sequence Length = 76546 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 gatacaaaccaagactcatt 273 |||||||||||||||||||| Sbjct: 39011 gatacaaaccaagactcatt 38992
>gb|AC004168.2|AC004168 Homo sapiens chromosome 4 clone B159L21 map 4q25, complete sequence Length = 185566 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 603 gtcaaggtgtctttcattgg 622 |||||||||||||||||||| Sbjct: 474 gtcaaggtgtctttcattgg 493
>gb|AE003564.3| Drosophila melanogaster chromosome 3L, section 21 of 83 of the complete sequence Length = 315944 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aaagtgaacaaaagaatcgg 147 |||||||||||||||||||| Sbjct: 84255 aaagtgaacaaaagaatcgg 84274
>gb|AC152984.2| Mus musculus 6 BAC RP23-462B3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 185001 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 aaagatattaaaagtgaaca 137 |||||||||||||||||||| Sbjct: 44470 aaagatattaaaagtgaaca 44451
>gb|AC149878.2| Xenopus tropicalis clone CH216-26P2, complete sequence Length = 185685 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 atacatgtatttatgtatgt 187 |||||||||||||||||||| Sbjct: 180452 atacatgtatttatgtatgt 180433
>emb|AL669956.10| Mouse DNA sequence from clone RP23-222I1 on chromosome X, complete sequence Length = 199434 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 52 ggtaatttctctgtgcttgaatgt 75 ||||||||||||||||||| |||| Sbjct: 42691 ggtaatttctctgtgcttggatgt 42714 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,283,762 Number of Sequences: 3902068 Number of extensions: 6283762 Number of successful extensions: 138557 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 138405 Number of HSP's gapped (non-prelim): 152 length of query: 655 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 632 effective length of database: 17,143,297,704 effective search space: 10834564148928 effective search space used: 10834564148928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)