ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal36b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT3_CARPA (Q96386) Metallothionein-like protein type 3 (MT-3) 60 7e-09
2MT3_MALDO (O24059) Metallothionein-like protein type 3 (MT-3) 59 2e-08
3MT3_MUSAC (Q40256) Metallothionein-like protein type 3 (MT-3) (M... 55 1e-07
4MT3_ACTCH (P43389) Metallothionein-like protein type 3 PKIWI503 52 1e-06
5MT3_PRUAV (O48951) Metallothionein-like protein 1 (MT-1) 50 4e-06
6MT3_PICGL (Q40854) Metallothionein-like protein EMB30 42 0.002
7GLYA_BRUSU (Q8G1F1) Serine hydroxymethyltransferase (EC 2.1.2.1)... 30 6.0
8GLYA_BRUME (Q8YGG7) Serine hydroxymethyltransferase (EC 2.1.2.1)... 30 6.0
9GLYA_BRUAB (Q57DY5) Serine hydroxymethyltransferase (EC 2.1.2.1)... 30 6.0
10GLYA_BRUA2 (Q2YN95) Serine hydroxymethyltransferase (EC 2.1.2.1)... 30 6.0

>MT3_CARPA (Q96386) Metallothionein-like protein type 3 (MT-3)|
          Length = 65

 Score = 59.7 bits (143), Expect = 7e-09
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +2

Query: 29  MADKCGNCDCADKTQCVKKGDSYGIVMVDTEKRCHTII 142
           M+D CGNCDCADKTQCVKKG SY   +++TEK   T++
Sbjct: 1   MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMTVV 38



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>MT3_MALDO (O24059) Metallothionein-like protein type 3 (MT-3)|
          Length = 66

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 32/76 (42%), Positives = 41/76 (53%)
 Frame = +2

Query: 29  MADKCGNCDCADKTQCVKKGDSYGIVMVDTEKRCHTIISLR*SALLNYVP*YMTFYGGSR 208
           M+ KC NCDCAD TQCVKKG+SY +V+V+TE R    +         +V      + G  
Sbjct: 1   MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTV---------FVDAPAAEHDGKC 51

Query: 209 K**TDVGPCMYCTCSH 256
           K  T    C+ CTC H
Sbjct: 52  KCGTGCS-CVSCTCGH 66



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>MT3_MUSAC (Q40256) Metallothionein-like protein type 3 (MT-3) (MWMT3)|
          Length = 65

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 22/28 (78%), Positives = 26/28 (92%)
 Frame = +2

Query: 41  CGNCDCADKTQCVKKGDSYGIVMVDTEK 124
           CGNCDC DK+QCVKKG+SYGI +V+TEK
Sbjct: 4   CGNCDCVDKSQCVKKGNSYGIDIVETEK 31



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>MT3_ACTCH (P43389) Metallothionein-like protein type 3 PKIWI503|
          Length = 63

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 32/74 (43%), Positives = 38/74 (51%)
 Frame = +2

Query: 29  MADKCGNCDCADKTQCVKKGDSYGIVMVDTEKRCHTIISLR*SALLNYVP*YMTFYGGSR 208
           M+DKCGNCDCAD +QCVKKG+S  IV  D       ++          VP      GG  
Sbjct: 1   MSDKCGNCDCADSSQCVKKGNSIDIVETDKSYIEDVVMG---------VP--AAESGGKC 49

Query: 209 K**TDVGPCMYCTC 250
           K  T   PC+ CTC
Sbjct: 50  KCGTSC-PCVNCTC 62



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>MT3_PRUAV (O48951) Metallothionein-like protein 1 (MT-1)|
          Length = 64

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +2

Query: 29  MADKCGNCDCADKTQCVKKGDSYGIVMVDTEKR 127
           M+ KC NCDC+D +QC KKG S+ +V+V+TE R
Sbjct: 1   MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENR 33



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>MT3_PICGL (Q40854) Metallothionein-like protein EMB30|
          Length = 60

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +2

Query: 29 MADKCGNCDCADKTQCVKKG 88
          M+  CGNCDCADK+QC KKG
Sbjct: 1  MSSDCGNCDCADKSQCTKKG 20



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>GLYA_BRUSU (Q8G1F1) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 438

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 608 EMKSHATTRTSSA-HNHIVIVVQT*SSATGYRGTRDRGRSDILCTHHQLSF 459
           E+KSH     S    NH+++V     +ATG R     GR++I C  + + F
Sbjct: 312 ELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPF 362



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>GLYA_BRUME (Q8YGG7) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 438

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 608 EMKSHATTRTSSA-HNHIVIVVQT*SSATGYRGTRDRGRSDILCTHHQLSF 459
           E+KSH     S    NH+++V     +ATG R     GR++I C  + + F
Sbjct: 312 ELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPF 362



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>GLYA_BRUAB (Q57DY5) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 438

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 608 EMKSHATTRTSSA-HNHIVIVVQT*SSATGYRGTRDRGRSDILCTHHQLSF 459
           E+KSH     S    NH+++V     +ATG R     GR++I C  + + F
Sbjct: 312 ELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPF 362



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>GLYA_BRUA2 (Q2YN95) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 438

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 608 EMKSHATTRTSSA-HNHIVIVVQT*SSATGYRGTRDRGRSDILCTHHQLSF 459
           E+KSH     S    NH+++V     +ATG R     GR++I C  + + F
Sbjct: 312 ELKSHGLDIVSGGTDNHLMLVDLRPKNATGKRAEAALGRANITCNKNGIPF 362


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,089,348
Number of Sequences: 219361
Number of extensions: 1304068
Number of successful extensions: 2883
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2882
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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