ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal35l21 |
|---|---|
| Clone Library Name | barley_pub |
>TTP_BOVIN (P53781) Tristetraproline (TTP) (Zinc finger protein 36 homolog)| (Zfp-36) (TIS11A protein) (TIS11) Length = 324 Score = 29.3 bits (64), Expect(2) = 0.059 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 21/65 (32%) Frame = -1 Query: 594 GACSLAARCPTITGSSEFLLAP---------------------TPPPVSLLGALRAPPAF 478 G C +RC I SE L AP +PPP SL G + +F Sbjct: 152 GRCPYGSRCHFIHNPSEDLAAPGHPHVLRQSISFSGLPSGRRTSPPPASLAGPSVSSWSF 211 Query: 477 SPSSA 463 SPSS+ Sbjct: 212 SPSSS 216 Score = 26.2 bits (56), Expect(2) = 0.059 Identities = 14/36 (38%), Positives = 16/36 (44%) Frame = -2 Query: 350 SSPWPATASLTHSPCPLGAPAGHARHLEPPSLPSCC 243 SSP P L SP A GH +P P+CC Sbjct: 215 SSPPPPPGDLLLSPSAFSAAPGHLCRRDP--TPACC 248
>HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like| Length = 591 Score = 26.6 bits (57), Expect(2) = 1.5 Identities = 19/60 (31%), Positives = 27/60 (45%) Frame = +1 Query: 172 EITASQEEASTRKQQSSRAL*RNRQQDGRDGGSRCRA*PAGAPKGQGECVKEAVAGQGDE 351 EI S EE+ R++ + +A + G DGG G +GE +E G GDE Sbjct: 33 EIVYSAEESENRQEATPQAG-SDSDSGGGDGGDGDGGSGGGGDGEEGEGGEEGDEGDGDE 91 Score = 23.9 bits (50), Expect(2) = 1.5 Identities = 10/20 (50%), Positives = 11/20 (55%) Frame = +2 Query: 467 DEGENAGGARRAPRRDTGGG 526 DEG + GG R P GGG Sbjct: 97 DEGGSGGGPRSMPLSTEGGG 116
>WOX3B_MAIZE (Q6S3I3) WUSCHEL-related homeobox 3B (Narrow sheath protein 2)| Length = 265 Score = 31.6 bits (70), Expect = 1.8 Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 14/118 (11%) Frame = -2 Query: 533 HQHHHRCPS*APCEHLLHFRLRLPSLSGTLHDASASTPLMTGWHHHQK-----NWXXXXX 369 H HHH + HL + + +++ L+ A+A + G + Sbjct: 124 HHHHHPYATSFSMPHLGYLGQQAATVTPVLNPAAAGMVDLAGAGAGNRATGAGGAYGGGA 183 Query: 368 XXXTSCSS----PWPATASLTHSPCPLGAPAGH-----ARHLEPPSLPSCCRFRYKAL 222 SCSS W AT + H GA +G A HL+ LP+CCR K L Sbjct: 184 GLYNSCSSNQLEVWDATEPMDHCNASCGAASGSSDEGGAAHLQ---LPACCRRPLKTL 238
>WOX3A_MAIZE (Q70UV1) WUSCHEL-related homeobox 3A (Narrow sheath protein 1)| Length = 262 Score = 30.8 bits (68), Expect = 3.1 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Frame = -2 Query: 356 SCSS----PWPATASLTHSPCPLGAPAGHARHLEPPSLPSCCRFRYKAL 222 SCSS W AT ++ H GA +G + LP CCR K L Sbjct: 187 SCSSNQLEEWEATDAMEHCDASCGAASGSSDEGGALQLPPCCRRPLKTL 235
>SSY23_ORYSA (Q5DWW9) Soluble starch synthase 2-3, chloroplast precursor (EC| 2.4.1.21) (Soluble starch synthase II-3) (Starch synthase IIa) Length = 810 Score = 30.4 bits (67), Expect = 4.0 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 19/62 (30%) Frame = +2 Query: 431 PTRRAASRIRKADEGENAGGARRA----------------PRRDTGGGVG---ARRNSDD 553 P RR A +R+AD+GEN RA P R GGVG RR + Sbjct: 60 PRRRDAGVVRRADDGENEAAVERAGEDDDEEEEFSSGAWQPPRSRRGGVGKVLKRRGTVP 119 Query: 554 PV 559 PV Sbjct: 120 PV 121
>RHO_STRLI (P52157) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 707 Score = 30.0 bits (66), Expect = 5.3 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = +2 Query: 440 RAASRIRKADEGENAGGARRAPRRDTGGGVGARRNSDD 553 R R K D+ +N GG R+ ++ GGG R+ DD Sbjct: 255 RGRDRRNKGDDQQNQGGGRQDRQQQGGGGRQDRQQHDD 292
>ERRFI_RAT (P05432) ERBB receptor feedback inhibitor 1 (Mitogen-inducible gene| 6 protein homolog) (Mig-6) (Gene 33 polypeptide) Length = 459 Score = 25.0 bits (53), Expect(2) = 5.3 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Frame = -2 Query: 356 SCSSPWPATASLTHSPCPL-GAPAGHARHLEPPSLPSC-CRFRYKALLDCCFLVE 198 SCSSP+P A S PL P E PSL C + D FL+E Sbjct: 134 SCSSPFPCAAPCDRSSRPLPPLPIS-----EDPSLDEADCEVEFLTSADTDFLLE 183 Score = 23.5 bits (49), Expect(2) = 5.3 Identities = 13/37 (35%), Positives = 16/37 (43%) Frame = -1 Query: 585 SLAARCPTITGSSEFLLAPTPPPVSLLGALRAPPAFS 475 +L P+ GS F P P S L L PP+ S Sbjct: 65 TLGCASPSAPGSGHFFAERGPSPKSSLPPLVIPPSES 101
>LACTB_HUMAN (P83111) Serine beta-lactamase-like protein LACTB| Length = 547 Score = 29.3 bits (64), Expect = 9.0 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Frame = +2 Query: 176 SQPLRKKP------PQGSSNPAEPCSETDNRTGETAAPGAGRDLLARLKDRVNA 319 + PL + P P PA PCS R E++ RDLL R+KD V A Sbjct: 76 ASPLAEPPQEQSLAPWSPQTPAPPCSRCFARAIESS-----RDLLHRIKDEVGA 124
>HIC1_MOUSE (Q9R1Y5) Hypermethylated in cancer 1 protein (Hic-1)| Length = 892 Score = 29.3 bits (64), Expect = 9.0 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = +2 Query: 185 LRKKPPQGSSNPAEPCSETDNRTGETAAPGAG 280 L KK P GSS P P SE + + PGAG Sbjct: 403 LSKKSPPGSSVPERPLSERELPPRPDSPPGAG 434
>FREM1_MOUSE (Q684R7) FRAS1-related extracellular matrix protein 1 precursor| (QBRICK protein) Length = 2191 Score = 29.3 bits (64), Expect = 9.0 Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 5/88 (5%) Frame = +2 Query: 44 KAGACCPRNGCNGTRHST-DKG--RPTPSHXXXXXXXXXXXXXXXXXSQPLRKKPPQG-- 208 K G C P N N ++HST KG P PS PL ++PP Sbjct: 1869 KGGRCHPSNSFNQSKHSTWGKGPWHPLPS----------GSSSLTTSGSPLLERPPPSFT 1918 Query: 209 SSNPAEPCSETDNRTGETAAPGAGRDLL 292 S + + TD +T G G+ +L Sbjct: 1919 SGDALQGFGLTDLTQRKTMTQGNGKSVL 1946 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,530,531 Number of Sequences: 219361 Number of extensions: 1385121 Number of successful extensions: 5408 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4822 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5388 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
