ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal36a18 |
|---|---|
| Clone Library Name | barley_pub |
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 170 bits (430), Expect = 4e-42 Identities = 93/141 (65%), Positives = 106/141 (75%), Gaps = 11/141 (7%) Frame = +2 Query: 242 FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 421 FSEDL++FVGNLPFSVDSA LAGLFE+AG+VEMVEVIYDKLTGRSRGFGFVTMST EEVE Sbjct: 83 FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVE 142 Query: 422 EAVERLNGYVLDGRALKVNSGPPPPKDQSSP----RGFREQSGGFRQQSSR--GPSGG-- 577 A ++ NGY +DGRA++VN+GP P K ++S RG GG R +S G GG Sbjct: 143 AAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRS 202 Query: 578 ---DNRVYVGNLSWNVDDSAL 631 NRVYVGNLSW VDD AL Sbjct: 203 VDSSNRVYVGNLSWGVDDLAL 223 Score = 83.6 bits (205), Expect = 5e-16 Identities = 40/83 (48%), Positives = 59/83 (71%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 RV+VGNL + VD L LF + G+V +V+YD+ +GRSRGFGFVT S+ +EV +A++ Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDS 267 Query: 437 LNGYVLDGRALKVNSGPPPPKDQ 505 LNG LDGR+++V++ P+ Q Sbjct: 268 LNGVDLDGRSIRVSAAEERPRRQ 290
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 168 bits (426), Expect = 1e-41 Identities = 87/134 (64%), Positives = 99/134 (73%), Gaps = 4/134 (2%) Frame = +2 Query: 242 FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 421 FS DL++FVGNLPF+VDSAQLA LFE AG+VEMVEVIYDK+TGRSRGFGFVTMS+V EVE Sbjct: 87 FSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVE 146 Query: 422 EAVERLNGYVLDGRALKVNSGPPPPKDQS----SPRGFREQSGGFRQQSSRGPSGGDNRV 589 A ++ NGY LDGR L+VN+GPPPPK + PR SG +G NRV Sbjct: 147 AAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRV 206 Query: 590 YVGNLSWNVDDSAL 631 YVGNLSW VDD AL Sbjct: 207 YVGNLSWGVDDMAL 220 Score = 77.0 bits (188), Expect = 4e-14 Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 RV+VGNL + VD L LF + G V VIYD+ +GRS+GFGFVT + +EV+ A++ Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264 Query: 437 LNGYVLDGRALKVNSGPP-PPKDQ 505 L+G LDGR ++V+ PP+ Q Sbjct: 265 LDGADLDGRQIRVSEAEARPPRRQ 288
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 167 bits (422), Expect = 3e-41 Identities = 91/141 (64%), Positives = 106/141 (75%), Gaps = 11/141 (7%) Frame = +2 Query: 242 FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 421 FSEDL++FVGNLPFSVDSA LAGLFE+AG+VE+VEVIYDKL+GRSRGFGFVTMST EEVE Sbjct: 84 FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVE 143 Query: 422 EAVERLNGYVLDGRALKVNSGPPPPKDQSSP----RGFREQSGGFRQQSSR--GPSGG-- 577 A ++ NGY +DGRA++VN+GP P K ++S RG GG R +S G GG Sbjct: 144 AAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRS 203 Query: 578 ---DNRVYVGNLSWNVDDSAL 631 NRVYVGNLSW VDD AL Sbjct: 204 VDSSNRVYVGNLSWGVDDLAL 224 Score = 84.3 bits (207), Expect = 3e-16 Identities = 40/83 (48%), Positives = 59/83 (71%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 RV+VGNL + VD L LF + G+V +V+YD+ +GRSRGFGFVT S+ +EV +A++ Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268 Query: 437 LNGYVLDGRALKVNSGPPPPKDQ 505 LNG LDGR+++V++ P+ Q Sbjct: 269 LNGIDLDGRSIRVSAAEERPRRQ 291
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 164 bits (414), Expect = 3e-40 Identities = 90/131 (68%), Positives = 101/131 (77%), Gaps = 1/131 (0%) Frame = +2 Query: 242 FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 421 FS DL++FVGNL FS DSA LA LFE+AG+VEMVEVIYDKLTGRSRGFGFVTMS+ EEVE Sbjct: 83 FSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVE 142 Query: 422 EAVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPS-GGDNRVYVG 598 A ++ NGY LDGRAL+VNSGPPP K ++S FRE S FR S G S NRVYVG Sbjct: 143 AACQQFNGYELDGRALRVNSGPPPEKRENS--SFRENS-SFRGGSRGGGSFDSSNRVYVG 199 Query: 599 NLSWNVDDSAL 631 NL+W VD AL Sbjct: 200 NLAWGVDQDAL 210 Score = 82.0 bits (201), Expect = 1e-15 Identities = 43/89 (48%), Positives = 58/89 (65%), Gaps = 1/89 (1%) Frame = +2 Query: 242 FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 421 F RV+VGNL + VD L LF + G V +V+YD+ +GRSRGFGFVT S+ EEV Sbjct: 190 FDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVN 249 Query: 422 EAVERLNGYVLDGRALKVNSGPP-PPKDQ 505 A+E L+G L+GRA++V+ PP+ Q Sbjct: 250 NAIESLDGVDLNGRAIRVSPAEARPPRRQ 278
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 162 bits (411), Expect = 6e-40 Identities = 88/130 (67%), Positives = 99/130 (76%) Frame = +2 Query: 242 FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 421 FS DL++FVGNLPFS DSA LA LFE+AG+VEMVEVIYDKLTGRSRGFGFVTMS+ EEVE Sbjct: 83 FSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVE 142 Query: 422 EAVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGN 601 A ++ NGY LDGRAL+VNSGPPP K ++S FR GG R G NRVYVGN Sbjct: 143 AACQQFNGYELDGRALRVNSGPPPEKRENS--SFR---GGSR---GGGSFDSSNRVYVGN 194 Query: 602 LSWNVDDSAL 631 L+W VD AL Sbjct: 195 LAWGVDQDAL 204 Score = 82.0 bits (201), Expect = 1e-15 Identities = 43/89 (48%), Positives = 58/89 (65%), Gaps = 1/89 (1%) Frame = +2 Query: 242 FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 421 F RV+VGNL + VD L LF + G V +V+YD+ +GRSRGFGFVT S+ EEV Sbjct: 184 FDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVN 243 Query: 422 EAVERLNGYVLDGRALKVNSGPP-PPKDQ 505 A+E L+G L+GRA++V+ PP+ Q Sbjct: 244 NAIESLDGVDLNGRAIRVSPAEARPPRRQ 272
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 153 bits (386), Expect = 5e-37 Identities = 90/179 (50%), Positives = 105/179 (58%), Gaps = 49/179 (27%) Frame = +2 Query: 242 FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 421 FS DL++FVGNL F+VDSAQLA LFE AG+VEMVEVIYDK+TGRSRGFGFVTMST EVE Sbjct: 95 FSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154 Query: 422 EAVERLNGYVLDGRALKVNSGPPPPK-DQSSPRGFR------------------------ 526 A ++ NGY +GR L+VN+GPPPPK ++S RG R Sbjct: 155 AAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSER 214 Query: 527 ------EQSGGFRQQSSRGPSGGD------------------NRVYVGNLSWNVDDSAL 631 E+ GG+ Q S G GG NR+YVGNLSW VDD AL Sbjct: 215 GGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMAL 273 Score = 80.9 bits (198), Expect = 3e-15 Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 1/84 (1%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R++VGNL + VD L LF + G V VIYD+ +GRS+GFGFVT+S+ +EV++A+ Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317 Query: 437 LNGYVLDGRALKVNSGPP-PPKDQ 505 LNG LDGR ++V+ PP+ Q Sbjct: 318 LNGADLDGRQIRVSEAEARPPRGQ 341
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 129 bits (324), Expect = 7e-30 Identities = 70/128 (54%), Positives = 85/128 (66%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 E+ ++FVGNLP+ VDS +LAG+F+ AG VE+ EVIY++ T RSRGFGFVTMSTVEE E+A Sbjct: 53 EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 112 Query: 428 VERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLS 607 VE LNGY +DGR L VN P + +PRG E S RVYVGNL Sbjct: 113 VELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPS---------------CRVYVGNLP 157 Query: 608 WNVDDSAL 631 W+VD S L Sbjct: 158 WDVDTSRL 165 Score = 88.6 bits (218), Expect = 1e-17 Identities = 43/86 (50%), Positives = 58/86 (67%) Frame = +2 Query: 242 FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 421 F RV+VGNLP+ VD+++L LF + G V V+ D+ TGRSRGFGFVTMS+ EV Sbjct: 145 FEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVN 204 Query: 422 EAVERLNGYVLDGRALKVNSGPPPPK 499 +A+ L+G LDGRA++VN P+ Sbjct: 205 DAIAALDGQTLDGRAVRVNVAEERPR 230
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 116 bits (291), Expect = 5e-26 Identities = 64/129 (49%), Positives = 86/129 (66%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 SED ++FVGNLP+ +DS LA LF+QAG VE+ EVIY++ T RSRGFGFVTMSTVEE ++ Sbjct: 94 SEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADK 153 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNL 604 AVE + Y L+GR L VN +++PRG R + Q + R+YVGN+ Sbjct: 154 AVELYSQYDLNGRLLTVN--------KAAPRGSRPERAPRTFQPT-------YRIYVGNI 198 Query: 605 SWNVDDSAL 631 W++DD+ L Sbjct: 199 PWDIDDARL 207 Score = 86.7 bits (213), Expect = 5e-17 Identities = 38/86 (44%), Positives = 58/86 (67%) Frame = +2 Query: 242 FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 421 F R++VGN+P+ +D A+L +F + G V V++D+ +GRSRGFGFVTMS+ E+ Sbjct: 187 FQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMS 246 Query: 422 EAVERLNGYVLDGRALKVNSGPPPPK 499 EA+ L+G LDGR ++VN+ P+ Sbjct: 247 EAIANLDGQTLDGRTIRVNAAEERPR 272
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 114 bits (284), Expect = 3e-25 Identities = 64/128 (50%), Positives = 79/128 (61%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 ED ++FVGNLP+ VDS LA LFEQAG VE+ EVIY++ T +SRGFGFVTMSTVEE E+A Sbjct: 134 EDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKA 193 Query: 428 VERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLS 607 VE N Y ++GR L VN + P EQS R+YVGN+ Sbjct: 194 VEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQS---------------YRIYVGNIP 238 Query: 608 WNVDDSAL 631 W +DD+ L Sbjct: 239 WGIDDARL 246 Score = 87.0 bits (214), Expect = 4e-17 Identities = 38/79 (48%), Positives = 56/79 (70%) Frame = +2 Query: 242 FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 421 F + R++VGN+P+ +D A+L LF + G V V+YD+ TGRSRGFGFVTM++ E+ Sbjct: 226 FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMS 285 Query: 422 EAVERLNGYVLDGRALKVN 478 +A+ L+G LDGR ++VN Sbjct: 286 DAIANLDGQSLDGRTIRVN 304
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 110 bits (276), Expect = 3e-24 Identities = 65/129 (50%), Positives = 86/129 (66%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 SE+ ++FVGNL + V+S LA LFEQAG+VE+ EVIY++ T +SRGFGFVTMS+V+E E Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNL 604 AVE+ N Y L+GR L VN +++PRG R + R P+ RVYVGNL Sbjct: 207 AVEKFNRYDLNGRLLTVN--------KAAPRGSRPE----RAPRVYEPA---FRVYVGNL 251 Query: 605 SWNVDDSAL 631 W+VD+ L Sbjct: 252 PWDVDNGRL 260 Score = 89.4 bits (220), Expect = 8e-18 Identities = 43/80 (53%), Positives = 57/80 (71%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 RV+VGNLP+ VD+ +L LF + G V V+YD+ TGRSRGFGFVTMS V+E+ EA+ Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304 Query: 437 LNGYVLDGRALKVNSGPPPP 496 L+G L+GRA++VN P Sbjct: 305 LDGQNLEGRAIRVNVAEERP 324
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 98.6 bits (244), Expect = 1e-20 Identities = 53/125 (42%), Positives = 79/125 (63%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R++VGNLPFS+ S+QL+ +F +AG+V VE++YD++T RSRGF FVTM +VEE +EA+ Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNV 616 +G + GR +KVN P P+ G RE + + +G +++YV NLSW + Sbjct: 175 FDGSQVGGRTVKVNF-PEVPRG-----GEREVMSAKIRSTYQGFVDSPHKLYVANLSWAL 228 Query: 617 DDSAL 631 L Sbjct: 229 TSQGL 233 Score = 61.6 bits (148), Expect = 2e-09 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 6/99 (6%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 +++V NL +++ S L F +VIYD+ +GRSRGFGF+T S+ E + A++ Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277 Query: 437 LNGYVLDGRALKVNSG------PPPPKDQSSPRGFREQS 535 +N L+GR L++N PP ++SP + S Sbjct: 278 MNEVELEGRPLRLNVAGQKAPVSSPPVVETSPENDSDNS 316
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 82.8 bits (203), Expect = 8e-16 Identities = 47/125 (37%), Positives = 72/125 (57%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R++VGN+P ++++ +L + E+ G++E+ EV+YDK +GRSR FGFVTM TVE+ +E+ Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNV 616 LN + GR +KVN P + E S Q P +VY+GNL+ V Sbjct: 145 LNDTEIGGRKIKVNITEKPLEGMDIATTQAEDS-----QFVESP----YKVYIGNLAKTV 195 Query: 617 DDSAL 631 + L Sbjct: 196 TNELL 200 Score = 58.5 bits (140), Expect = 2e-08 Identities = 30/74 (40%), Positives = 46/74 (62%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 +V++GNL +V + L F + G V +V T +S GFGFV+ S+ EEVE A++ Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244 Query: 437 LNGYVLDGRALKVN 478 LN VL+G+ ++VN Sbjct: 245 LNNSVLEGQKIRVN 258
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 75.5 bits (184), Expect = 1e-13 Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 7/126 (5%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S++ ++FVG L F + L +F + G + V V+ D+ T RSRGFGFVT +++ ++ Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGG----FRQQSSRG---PSGGDN 583 A+ +NG +DGR ++V+ ++S RG+R S G FR RG GG + Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRS--RGYRGGSAGGRGFFRGGRGRGRGFSRGGGD 120 Query: 584 RVYVGN 601 R Y GN Sbjct: 121 RGYGGN 126
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 75.5 bits (184), Expect = 1e-13 Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 7/126 (5%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S++ ++FVG L F + L +F + G + V V+ D+ T RSRGFGFVT +++ ++ Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGG----FRQQSSRG---PSGGDN 583 A+ +NG +DGR ++V+ ++S RG+R S G FR RG GG + Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRS--RGYRGGSAGGRGFFRGGRGRGRGFSRGGGD 120 Query: 584 RVYVGN 601 R Y GN Sbjct: 121 RGYGGN 126
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 74.7 bits (182), Expect = 2e-13 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 12/115 (10%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L + L +F + G + + ++ D+ T +SRGF FVT+ + + ++A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 437 LNGYVLDGRALKVNSG------------PPPPKDQSSPRGFREQSGGFRQQSSRG 565 +NG LDG+A+KV PPPP+ + PRG R SGG R SRG Sbjct: 69 MNGKSLDGKAIKVEQATKPFFESGRRGPPPPPRSRGPPRGLRGGSGGTRGPPSRG 123
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 74.7 bits (182), Expect = 2e-13 Identities = 42/109 (38%), Positives = 58/109 (53%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 + R FVG L ++ D L F Q G V ++I D+ TGRSRGFGFVT + +++A+ Sbjct: 7 EYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66 Query: 431 ERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGG 577 E +NG LDGR++ VN + G R GG+R G GG Sbjct: 67 EGMNGQDLDGRSITVNEA--QSRGSGGGGGGRGGGGGYRSGGGGGYGGG 113
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 74.3 bits (181), Expect = 3e-13 Identities = 41/109 (37%), Positives = 59/109 (54%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 + R FVG L ++ D L F Q G + ++I D+ TGRSRGFGFVT + +++A+ Sbjct: 7 EYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66 Query: 431 ERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGG 577 E +NG LDGR++ VN + + G R GG+R G GG Sbjct: 67 EGMNGQDLDGRSITVNEA--QSRGSGAGGGGRGGGGGYRGGGGYGGGGG 113
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 74.3 bits (181), Expect = 3e-13 Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 7/125 (5%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S++ ++FVG L F + L +F + G + V V+ D+ T RSRGFGFVT +++ ++ Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGG----FRQQSSRG---PSGGDN 583 A+ +NG +DGR ++V+ ++S RG+R S G FR SRG GG + Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRS--RGYRGGSAGGRGFFRGGRSRGRGFSRGGGD 120 Query: 584 RVYVG 598 R Y G Sbjct: 121 RGYGG 125
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 74.3 bits (181), Expect = 3e-13 Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 7/125 (5%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S++ ++FVG L F + L +F + G + V V+ D+ T RSRGFGFVT +++ ++ Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGG----FRQQSSRG---PSGGDN 583 A+ +NG +DGR ++V+ ++S RG+R S G FR SRG GG + Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRS--RGYRGGSAGGRGFFRGGRSRGRGFSRGGGD 120 Query: 584 RVYVG 598 R Y G Sbjct: 121 RGYGG 125
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 74.3 bits (181), Expect = 3e-13 Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 7/125 (5%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S++ ++FVG L F + L +F + G + V V+ D+ T RSRGFGFVT +++ ++ Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGG----FRQQSSRG---PSGGDN 583 A+ +NG +DGR ++V+ ++S RG+R S G FR SRG GG + Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRS--RGYRGGSAGGRGFFRGGRSRGRGFSRGGGD 120 Query: 584 RVYVG 598 R Y G Sbjct: 121 RGYGG 125
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 72.8 bits (177), Expect = 8e-13 Identities = 32/74 (43%), Positives = 53/74 (71%) Frame = +2 Query: 254 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 +R++VG+L F++ L G+FE G +E ++++ D TGRS+G+GF+T S E ++A+E Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309 Query: 434 RLNGYVLDGRALKV 475 +LNG+ L GR +KV Sbjct: 310 QLNGFELAGRPMKV 323
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 72.8 bits (177), Expect = 8e-13 Identities = 32/74 (43%), Positives = 53/74 (71%) Frame = +2 Query: 254 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 +R++VG+L F++ L G+FE G +E ++++ D TGRS+G+GF+T S E ++A+E Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309 Query: 434 RLNGYVLDGRALKV 475 +LNG+ L GR +KV Sbjct: 310 QLNGFELAGRPMKV 323
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 72.4 bits (176), Expect = 1e-12 Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 12/115 (10%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L + L +F + G + + ++ D+ T +SRGF FVT + + ++ Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 437 LNGYVLDGRALKVNSG------------PPPPKDQSSPRGFREQSGGFRQQSSRG 565 +NG LDG+A+KV PPPP+ + PRG R SGG R SRG Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGSGGTRGPPSRG 123
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 71.6 bits (174), Expect = 2e-12 Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 + R FVG L ++ + L F Q G V ++I D+ +GRSRGFGFVT + + +A+ Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64 Query: 431 ERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQS-GGFRQQSSRGPSGGDNRVYVG 598 E +NG LDGR + VN + G R S GG+R G SGG Y G Sbjct: 65 EEMNGKELDGRVITVNEA--QSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSG 119
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 71.6 bits (174), Expect = 2e-12 Identities = 43/110 (39%), Positives = 59/110 (53%), Gaps = 1/110 (0%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 + R FVG L ++ D L F Q G V ++I D+ TGRSRGFGFVT + +++A+ Sbjct: 7 EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66 Query: 431 ERLNGYVLDGRALKVNSGPPPPKDQSSPRGFR-EQSGGFRQQSSRGPSGG 577 E +NG LDGR++ VN + G R GG+R G SGG Sbjct: 67 EGMNGQDLDGRSITVNEA--QSRGSGGGGGHRGGGGGGYRSGGGGGYSGG 114
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 71.2 bits (173), Expect = 2e-12 Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 12/136 (8%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L + L +F + G + V ++ D+ T +SRGF FVT + + ++A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 437 LNGYVLDGRALKVNSG------------PPPPKDQSSPRGFREQSGGFRQQSSRGPSGGD 580 +NG LDG+A+KV PPPP+ + PRG R GG +RGP Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGG--SGGTRGPPSRG 126 Query: 581 NRVYVGNLSWNVDDSA 628 + G S N + S+ Sbjct: 127 GHMDDGGYSMNFNMSS 142
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 70.9 bits (172), Expect = 3e-12 Identities = 40/109 (36%), Positives = 57/109 (52%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 + R FVG L ++ A+L F Q G V ++I D+ TGRSRGFGFVT + +++A+ Sbjct: 5 EYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 64 Query: 431 ERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGG 577 + +NG LDGR + VN RG GG+ + G GG Sbjct: 65 DEMNGKELDGRTITVNEAQSRGGGGGGGRG----GGGYGGRGGGGYGGG 109
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 69.7 bits (169), Expect = 7e-12 Identities = 42/112 (37%), Positives = 57/112 (50%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 + R FVG L ++ + L F G + +VI D+ TGRSRGFGFVT S+ + +A+ Sbjct: 7 EYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAI 66 Query: 431 ERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNR 586 E +NG LDGR + VN Q+ RG GG+ G GG R Sbjct: 67 ENMNGKELDGRNITVN--------QAQSRGGGGGGGGYGGGRGGGGYGGGRR 110
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 69.3 bits (168), Expect = 9e-12 Identities = 45/113 (39%), Positives = 62/113 (54%), Gaps = 1/113 (0%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 SE+ ++FVG L F+ D L F G + V V+ D+ T RSRGFGF+T + E + Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQS-SRGPSGGD 580 A+ +NG LDGR ++V+ S RG R + G R +S SRG GGD Sbjct: 63 AMRAMNGESLDGRQIRVDHA------GKSARGSRGGAFGGRGRSYSRG--GGD 107
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 68.9 bits (167), Expect = 1e-11 Identities = 41/128 (32%), Positives = 64/128 (50%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 E +FVG L +S+D L FE G V VIY++ T RSRG+G+V E+A Sbjct: 166 EPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKA 225 Query: 428 VERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLS 607 ++ + G +DGR + + S P G +++ F PS + +++GNLS Sbjct: 226 IQEMQGKEIDGRPINCD------MSTSKPAGNNDRAKKFGDT----PSEPSDTLFLGNLS 275 Query: 608 WNVDDSAL 631 +N D A+ Sbjct: 276 FNADRDAI 283 Score = 59.3 bits (142), Expect = 9e-09 Identities = 34/113 (30%), Positives = 56/113 (49%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+GNL F+ D + LF + G V V + T + +GFG+V S +E+ ++A++ L Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVG 598 G +D R ++++ P P + GG R RG G NR + G Sbjct: 329 QGEYIDNRPVRLDFSSPRPNNDGG-------RGGSRGFGGRGGGRGGNRGFGG 374
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 68.9 bits (167), Expect = 1e-11 Identities = 40/109 (36%), Positives = 58/109 (53%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 + R FVG L ++ + L F Q G + ++I D+ TGRSRGFGFVT + + +A+ Sbjct: 5 EYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAI 64 Query: 431 ERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGG 577 E +NG LDGR + VN ++ RG GG R++ G GG Sbjct: 65 EGMNGQELDGRNITVN--------EAQSRG--SGGGGGRREGGGGGYGG 103
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 68.6 bits (166), Expect = 2e-11 Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 1/130 (0%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 +E VFVG L ++VD L FE+ G++ VI D +GRS+G+G+V T E + Sbjct: 260 NETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKA 319 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQ-SGGFRQQSSRGPSGGDNRVYVGN 601 AV +DGR + ++ P P ++P+ + +Q +G F Q S PS + V+VGN Sbjct: 320 AVAANGTKEIDGRMVNLDLSNPRP---ANPQPYAQQRAGNFGDQLSE-PS---DTVFVGN 372 Query: 602 LSWNVDDSAL 631 LS+N + L Sbjct: 373 LSFNATEDDL 382 Score = 59.7 bits (143), Expect = 7e-09 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 3/109 (2%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFVGNL F+ L+ F G ++ + + D +GR +GFG+VT S ++ ++ VE + Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-M 426 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPR---GFREQSGGFRQQSSRGPSGG 577 NG+ + GR ++ D S+PR G R GGF + G GG Sbjct: 427 NGHFIAGRPCRL--------DFSTPRTGGGSRGGRGGFGGRGGFGGRGG 467
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 67.8 bits (164), Expect = 3e-11 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 2/114 (1%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S++ ++F+G L F + L F + G + V V+ D+ T RSRGFGFVT V++ ++ Sbjct: 2 SDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKD 61 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQ--QSSRGPSGGD 580 A+ +NG +DGR ++V+ ++ G+R S G R + RG GGD Sbjct: 62 AMMAMNGKSVDGRQIRVDQAGKSSGERRG--GYRGGSSGGRGFFRGGRGRGGGD 113
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 67.4 bits (163), Expect = 3e-11 Identities = 40/100 (40%), Positives = 54/100 (54%), Gaps = 2/100 (2%) Frame = +2 Query: 254 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 + ++VGNL + V A L +F + GSV+ V++ D+ TGR RGFGFV + E A+E Sbjct: 1 MSIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIE 60 Query: 434 RLNGYVLDGRALKVNSGPPPPKDQ--SSPRGFREQSGGFR 547 L+G GR LKVN P S G R+ GG R Sbjct: 61 ALDGAEWMGRDLKVNKAKPRENRSGGGSFGGGRKSYGGSR 100
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 67.4 bits (163), Expect = 3e-11 Identities = 30/74 (40%), Positives = 50/74 (67%) Frame = +2 Query: 254 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 +R++VG+L F++ L G+FE G ++ + ++ D TGRS+G+GF+T S E A+E Sbjct: 263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 322 Query: 434 RLNGYVLDGRALKV 475 +LNG+ L GR ++V Sbjct: 323 QLNGFELAGRPMRV 336 Score = 38.1 bits (87), Expect = 0.022 Identities = 33/124 (26%), Positives = 53/124 (42%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VF L + L F G V V +I D+ + RS+G +V ++ V A+ L Sbjct: 168 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-L 226 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 G L G + V + K++ + Q G +GG R+YVG+L +N+ Sbjct: 227 TGQRLLGVPIIVQASQAE-KNRLAAMANNLQKG----------NGGPMRLYVGSLHFNIT 275 Query: 620 DSAL 631 + L Sbjct: 276 EDML 279
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 66.6 bits (161), Expect = 6e-11 Identities = 39/98 (39%), Positives = 55/98 (56%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 + R FVG L ++ ++ L F G V +VI D+ TGRSRGFGFVT S+ + + +A+ Sbjct: 7 EYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAI 66 Query: 431 ERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGF 544 E +NG LDGR + VN Q+ RG GG+ Sbjct: 67 ENMNGKELDGRNITVN--------QAQSRGGGGGGGGY 96
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 65.9 bits (159), Expect = 1e-10 Identities = 42/112 (37%), Positives = 58/112 (51%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 SE+ ++FVG L F+ D L F G + V V+ D+ T RSRGFGF+T + E Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASV 62 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGD 580 A+ +NG LDGR ++V+ K RG + G + SRG GGD Sbjct: 63 AMRAMNGESLDGRQIRVDHA---GKSARGTRGGGFGAHGRGRSYSRG--GGD 109
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 64.3 bits (155), Expect = 3e-10 Identities = 40/114 (35%), Positives = 55/114 (48%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L + D A L F G V +VI D+ TGRSRGFGFV + A+ Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVG 598 ++G L+GR ++VN P S+PR + GG G GG Y G Sbjct: 96 MDGKELNGRHIRVNPANDRP---SAPRAY---GGGGGYSGGGGGYGGGGGGYGG 143
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 63.5 bits (153), Expect = 5e-10 Identities = 29/74 (39%), Positives = 43/74 (58%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFVGN+P+ QL +F + GSV ++YD+ TG+ +G+GF E A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 440 NGYVLDGRALKVNS 481 NG GRAL+V++ Sbjct: 78 NGREFSGRALRVDN 91
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 63.5 bits (153), Expect = 5e-10 Identities = 29/74 (39%), Positives = 43/74 (58%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFVGN+P+ QL +F + GSV ++YD+ TG+ +G+GF E A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 440 NGYVLDGRALKVNS 481 NG GRAL+V++ Sbjct: 78 NGREFSGRALRVDN 91
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 62.4 bits (150), Expect = 1e-09 Identities = 39/95 (41%), Positives = 48/95 (50%) Frame = +2 Query: 302 LAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVNS 481 L F G V ++I D+ T RSRGFGFVT ST E + A+E +NG LDGR + VN Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVN- 61 Query: 482 GPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNR 586 ++ RG R GG RG GG R Sbjct: 62 -------EAQSRGGRGGGGGGGYGGGRGGGGGYGR 89
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 62.4 bits (150), Expect = 1e-09 Identities = 36/89 (40%), Positives = 48/89 (53%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG LP+ A L FE G +E VI D+ TG+SRG+GFVTM+ E A + Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGF 523 N ++DGR VN K +S GF Sbjct: 72 PNP-IIDGRKANVNLAYLGAKPRSLQTGF 99
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 61.6 bits (148), Expect = 2e-09 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 4/118 (3%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 SED +V+VGNLP V ++ +F + G ++ V++ +GR F FV + E+ Sbjct: 6 SEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI----KSGRGPAFAFVEFEDHRDAED 61 Query: 425 AVERLNGYVLDGRALKV----NSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNR 586 AV +GY DGR ++V GP P + G + G FR G GG R Sbjct: 62 AVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQR 119
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 61.6 bits (148), Expect = 2e-09 Identities = 28/74 (37%), Positives = 42/74 (56%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFVGN+P+ QL +F + G V ++YD+ TG+ +G+GF E A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 440 NGYVLDGRALKVNS 481 NG GRAL+V++ Sbjct: 78 NGREFSGRALRVDN 91
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 61.6 bits (148), Expect = 2e-09 Identities = 28/74 (37%), Positives = 42/74 (56%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFVGN+P+ QL +F + G V ++YD+ TG+ +G+GF E A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 440 NGYVLDGRALKVNS 481 NG GRAL+V++ Sbjct: 78 NGREFSGRALRVDN 91
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 61.6 bits (148), Expect = 2e-09 Identities = 28/74 (37%), Positives = 42/74 (56%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFVGN+P+ QL +F + G V ++YD+ TG+ +G+GF E A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 440 NGYVLDGRALKVNS 481 NG GRAL+V++ Sbjct: 78 NGREFSGRALRVDN 91
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 61.6 bits (148), Expect = 2e-09 Identities = 28/74 (37%), Positives = 42/74 (56%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFVGN+P+ QL +F + G V ++YD+ TG+ +G+GF E A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 440 NGYVLDGRALKVNS 481 NG GRAL+V++ Sbjct: 78 NGREFSGRALRVDN 91
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 61.2 bits (147), Expect = 2e-09 Identities = 35/89 (39%), Positives = 48/89 (53%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG LP+ A L FE G +E VI D+ TG+SRG+GFVTM+ + A + Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGF 523 N ++DGR VN K +S GF Sbjct: 93 PNP-IIDGRKANVNLAYLGAKPRSLQTGF 120
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 60.5 bits (145), Expect = 4e-09 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 3/98 (3%) Frame = +2 Query: 302 LAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVNS 481 L +F + G + V V+YD+ TGRSRGF FV +++ +EA+ER NG LDGR ++V+ Sbjct: 135 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 194 Query: 482 GPPPPKDQSSP---RGFREQSGGFRQQSSRGPSGGDNR 586 +P G SGG G GG R Sbjct: 195 SITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 232
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 59.7 bits (143), Expect = 7e-09 Identities = 37/136 (27%), Positives = 74/136 (54%), Gaps = 10/136 (7%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 + +FVG+L +VD L F+ S V++D TG SRG+GFV+ ++ ++ + A Sbjct: 159 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNA 218 Query: 428 VERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQ-------SGGFRQQSSRGPSGGDNR 586 ++ + G L+GR L++N +D ++ ++++ GGFRQ + + +N Sbjct: 219 MDSMQGQDLNGRPLRINWA--AKRDNNNNNNYQQRRNYGNNNRGGFRQYN----NNNNNN 272 Query: 587 VYVG---NLSWNVDDS 625 + +G N++ N+++S Sbjct: 273 MNMGMNMNMNMNMNNS 288 Score = 40.8 bits (94), Expect = 0.003 Identities = 29/129 (22%), Positives = 56/129 (43%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 + D ++VGNL ++ L F+ G + ++++ DK ++ + FV + Sbjct: 71 TSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANI 129 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNL 604 A++ LNG ++ +K+N + QS + S ++VG+L Sbjct: 130 ALQTLNGKQIENNIVKIN---------------------WAFQSQQSSSDDTFNLFVGDL 168 Query: 605 SWNVDDSAL 631 + NVDD L Sbjct: 169 NVNVDDETL 177 Score = 30.8 bits (68), Expect = 3.5 Identities = 24/93 (25%), Positives = 39/93 (41%) Frame = +2 Query: 263 FVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLN 442 ++GN+P A L LF+ G I D +G F+ T E+ + L Sbjct: 343 YIGNIPHFATEADLIPLFQNFG------FILDFKHYPEKGCCFIKYDTHEQAAVCIVALA 396 Query: 443 GYVLDGRALKVNSGPPPPKDQSSPRGFREQSGG 541 + GR L+ G K++S+ ++Q GG Sbjct: 397 NFPFQGRNLRTGWG----KERSNFMPQQQQQGG 425
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 59.7 bits (143), Expect = 7e-09 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 4/109 (3%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSR----GFGFVTMSTVE 412 ++D RVFVG L S +++ LFE G+V V + + ++ +R G FVT + E Sbjct: 41 ADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQE 100 Query: 413 EVEEAVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSS 559 +V++A+E LNG LD R + V P + R + G ++S Sbjct: 101 DVDKAIETLNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKNGEEPETS 149 Score = 33.1 bits (74), Expect = 0.70 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = +2 Query: 371 RSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVNS 481 R RGFGFV+ + E+ A+E +NG + L V S Sbjct: 256 RGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKS 292
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 58.9 bits (141), Expect = 1e-08 Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Frame = +2 Query: 302 LAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVNS 481 L +F + G + V V+YD+ TGRSRGF FV +++ +EA+ER NG LDGR ++V+ Sbjct: 133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 192 Query: 482 GPPPPKDQSSP---RGFREQSGGFRQQSSRGPSGG 577 +P G SGG G GG Sbjct: 193 SITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGG 227
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 58.2 bits (139), Expect = 2e-08 Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Frame = +2 Query: 245 SEDLR-VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 421 S D R VFVGNLP+ V+ + + F GS+ V ++ DK+TG +GFG+V + V Sbjct: 283 SRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVH 342 Query: 422 EAVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDN 583 A+ +LN L GR L+V K F++Q+ R ++ P G N Sbjct: 343 LAL-KLNNSELMGRKLRVMRSVNKEK-------FKQQNSNPRLKNVSKPKQGLN 388 Score = 37.4 bits (85), Expect = 0.037 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFVGNLP + + +L F++ G +E V + L + ++ + + Sbjct: 187 VFVGNLPVTCNKKKLKSFFKEYGQIESVR--FRSLIPAEGTLSKKLAAIKRKIHPDQKNI 244 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFR---QQSSRGPSGGDNRVYVGNLSW 610 N YV+ K S Q+ R + + GFR +S S V+VGNL + Sbjct: 245 NAYVV----FKEESA----ATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPY 296 Query: 611 NVDDSAL 631 V++SA+ Sbjct: 297 KVEESAI 303
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 57.8 bits (138), Expect = 3e-08 Identities = 40/104 (38%), Positives = 52/104 (50%), Gaps = 13/104 (12%) Frame = +2 Query: 245 SEDLR-VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 421 S D R VFVGNLP+ VD + L F GS+ V ++ + LTG RGFG+V + V Sbjct: 281 SRDKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVH 340 Query: 422 EAVERLNGYVLDGRALKV------------NSGPPPPKDQSSPR 517 A+ +LN L GR L+V NS P KD S + Sbjct: 341 LAL-KLNNSELMGRKLRVMRSVNKEKLKQQNSNPSVKKDGSKSK 383 Score = 36.6 bits (83), Expect = 0.064 Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 17/141 (12%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVE---------VIYDKLTGRSRGF--------G 388 VFVGNLP + + +L F++ G VE V + KL R F Sbjct: 185 VFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQKSINA 244 Query: 389 FVTMSTVEEVEEAVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGP 568 +V +A++R + +G ++V D +S R++ Sbjct: 245 YVVFKEERAAAKALQRNGAQIAEGFRIRV--------DLASETASRDK------------ 284 Query: 569 SGGDNRVYVGNLSWNVDDSAL 631 V+VGNL + VD+SAL Sbjct: 285 ----RSVFVGNLPYRVDESAL 301
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 57.4 bits (137), Expect = 3e-08 Identities = 28/77 (36%), Positives = 42/77 (54%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 + V LP ++ +L LF G VE ++I DK+ G S G+GFV T ++ E A+ L Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81 Query: 440 NGYVLDGRALKVNSGPP 490 NG L + +KV+ P Sbjct: 82 NGLRLQSKTIKVSYARP 98 Score = 53.5 bits (127), Expect = 5e-07 Identities = 30/73 (41%), Positives = 42/73 (57%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL D L +F G+V V+VI D T + +GFGFVTM+ EE A+ L Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305 Query: 440 NGYVLDGRALKVN 478 NGY L + L+V+ Sbjct: 306 NGYRLGDKILQVS 318 Score = 39.7 bits (91), Expect = 0.008 Identities = 18/67 (26%), Positives = 33/67 (49%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 +D +++ LP ++ + +F + G + V+ D+ TG SRG F+ E EEA Sbjct: 104 KDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEA 163 Query: 428 VERLNGY 448 + G+ Sbjct: 164 ITSFIGH 170
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 57.4 bits (137), Expect = 3e-08 Identities = 29/74 (39%), Positives = 47/74 (63%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R+ V N+PF L +FE+ G V VE+I+++ S+GFGFVTM ++ E A + Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQDAERARQE 211 Query: 437 LNGYVLDGRALKVN 478 L+G +++GR ++VN Sbjct: 212 LHGSMIEGRKIEVN 225
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 57.4 bits (137), Expect = 3e-08 Identities = 32/109 (29%), Positives = 54/109 (49%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFVGN+P+ V Q+ +F Q G V+ +++ D TG +G+GF E AV +L Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNR 586 N L R ++V P+ S + E++ + +Q + S ++R Sbjct: 69 NNSELGPRKIRVEFPSNDPRRNQSYE-YTERTDRYMEQQNAHESSYNSR 116
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 57.0 bits (136), Expect = 5e-08 Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 4/121 (3%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV-- 430 ++FVG + + L FEQ G +E++E++ D+ +G+ RGF FVT + V++ V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 431 --ERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNL 604 +NG+ + R K S SS RG R SG F G G DN GN Sbjct: 165 KYHTVNGHNCEVR--KALSKQEMASASSSQRG-RSGSGNFGGGRGGGFGGNDNFGRGGNF 221 Query: 605 S 607 S Sbjct: 222 S 222 Score = 53.9 bits (128), Expect = 4e-07 Identities = 30/72 (41%), Positives = 43/72 (59%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L F L FEQ G++ V+ D T RSRGFGFVT +TVEEV+ A+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 72 Query: 437 LNGYVLDGRALK 472 + +DGR ++ Sbjct: 73 ARPHKVDGRVVE 84
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 57.0 bits (136), Expect = 5e-08 Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 4/121 (3%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV-- 430 ++FVG + + L FEQ G +E++E++ D+ +G+ RGF FVT + V++ V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 431 --ERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNL 604 +NG+ + R K S SS RG R SG F G G DN GN Sbjct: 165 KYHTVNGHNCEVR--KALSKQEMASASSSQRG-RSGSGNFGGGRGGGFGGNDNFGRGGNF 221 Query: 605 S 607 S Sbjct: 222 S 222 Score = 53.9 bits (128), Expect = 4e-07 Identities = 30/72 (41%), Positives = 43/72 (59%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L F L FEQ G++ V+ D T RSRGFGFVT +TVEEV+ A+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 72 Query: 437 LNGYVLDGRALK 472 + +DGR ++ Sbjct: 73 ARPHKVDGRVVE 84
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 57.0 bits (136), Expect = 5e-08 Identities = 32/73 (43%), Positives = 43/73 (58%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV NL D + L LF G+V V+VI D T + +GFGFVTM+ +E A+ L Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 440 NGYVLDGRALKVN 478 NGY L R L+V+ Sbjct: 346 NGYRLGERVLQVS 358 Score = 53.9 bits (128), Expect = 4e-07 Identities = 25/77 (32%), Positives = 43/77 (55%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 + V LP ++ + LF G +E +++ DK+TG+S G+GFV S + ++A+ L Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100 Query: 440 NGYVLDGRALKVNSGPP 490 NG L + +KV+ P Sbjct: 101 NGLKLQTKTIKVSYARP 117 Score = 48.5 bits (114), Expect = 2e-05 Identities = 23/65 (35%), Positives = 36/65 (55%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 D ++V LP ++ ++ LF Q G + ++ D+ TG SRG GF+ E EEA+ Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAI 183 Query: 431 ERLNG 445 + LNG Sbjct: 184 KGLNG 188
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 57.0 bits (136), Expect = 5e-08 Identities = 32/73 (43%), Positives = 43/73 (58%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV NL D + L LF G+V V+VI D T + +GFGFVTM+ +E A+ L Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 440 NGYVLDGRALKVN 478 NGY L R L+V+ Sbjct: 346 NGYRLGERVLQVS 358 Score = 53.9 bits (128), Expect = 4e-07 Identities = 25/77 (32%), Positives = 43/77 (55%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 + V LP ++ + LF G +E +++ DK+TG+S G+GFV S + ++A+ L Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100 Query: 440 NGYVLDGRALKVNSGPP 490 NG L + +KV+ P Sbjct: 101 NGLKLQTKTIKVSYARP 117 Score = 49.3 bits (116), Expect = 9e-06 Identities = 23/65 (35%), Positives = 37/65 (56%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 D ++V LP ++ ++ LF Q G + ++ D++TG SRG GF+ E EEA+ Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183 Query: 431 ERLNG 445 + LNG Sbjct: 184 KGLNG 188
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 57.0 bits (136), Expect = 5e-08 Identities = 28/77 (36%), Positives = 42/77 (54%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 + V LP ++ +L LF G VE ++I DK+ G S G+GFV T ++ E A+ L Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 Query: 440 NGYVLDGRALKVNSGPP 490 NG L + +KV+ P Sbjct: 82 NGLRLQSKTIKVSYARP 98 Score = 54.3 bits (129), Expect = 3e-07 Identities = 30/73 (41%), Positives = 42/73 (57%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL D L +F G+V V+VI D T + +GFGFVTM+ EE A+ L Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305 Query: 440 NGYVLDGRALKVN 478 NGY L + L+V+ Sbjct: 306 NGYRLGDKILQVS 318 Score = 43.1 bits (100), Expect = 7e-04 Identities = 19/67 (28%), Positives = 34/67 (50%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 +D +++ LP ++ + +F + G + V+ D+ TG SRG F+ E EEA Sbjct: 104 KDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEA 163 Query: 428 VERLNGY 448 + NG+ Sbjct: 164 ITSFNGH 170
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 57.0 bits (136), Expect = 5e-08 Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 15/122 (12%) Frame = +2 Query: 266 VGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNG 445 V NL + L +FE+ G V V + D+ T SRGF FV + E+A++ ++G Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77 Query: 446 YVLDGRALKV--------------NSGPPPPKDQSSPRGFREQSGGFRQQS-SRGPSGGD 580 VLDGR L+V GPPP + SS G R +S R++S SR S Sbjct: 78 AVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRSPRRRRRSRSRSRSRSR 137 Query: 581 NR 586 +R Sbjct: 138 SR 139
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 56.6 bits (135), Expect = 6e-08 Identities = 41/128 (32%), Positives = 61/128 (47%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 E V++ N +D +L +F G+ V+V+ D TGRSRGFGFV EE ++A Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKA 247 Query: 428 VERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLS 607 V +NG ++GR + V + Q + EQ R +G + +YV NL Sbjct: 248 VSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN-----LYVKNLD 302 Query: 608 WNVDDSAL 631 +DD L Sbjct: 303 DGIDDDRL 310 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/72 (34%), Positives = 40/72 (55%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VF+ NL S+D+ L F G++ +V+ D+ SRG+GFV T E A++ + Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTM 158 Query: 440 NGYVLDGRALKV 475 NG +L+ R + V Sbjct: 159 NGMLLNDRKVFV 170 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/76 (31%), Positives = 42/76 (55%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 + + ++V NL +D +L F G++ +V+ + G S+GFGFV S+ EE +A Sbjct: 292 QGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKA 349 Query: 428 VERLNGYVLDGRALKV 475 V +NG ++ + L V Sbjct: 350 VTEMNGRIVSTKPLYV 365
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 56.6 bits (135), Expect = 6e-08 Identities = 41/128 (32%), Positives = 62/128 (48%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 E V++ N +D +L +F G+ V+V+ D +GRSRGFGFV EE ++A Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKA 247 Query: 428 VERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLS 607 V +NG ++GR + V + QS + EQ R +G + +YV NL Sbjct: 248 VSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVN-----LYVKNLD 302 Query: 608 WNVDDSAL 631 +DD L Sbjct: 303 DGIDDDRL 310 Score = 44.3 bits (103), Expect = 3e-04 Identities = 25/72 (34%), Positives = 40/72 (55%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VF+ NL S+D+ L F G++ +V+ D+ SRG+GFV T E A++ + Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTM 158 Query: 440 NGYVLDGRALKV 475 NG +L+ R + V Sbjct: 159 NGMLLNDRKVFV 170 Score = 42.7 bits (99), Expect = 9e-04 Identities = 24/76 (31%), Positives = 42/76 (55%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 + + ++V NL +D +L F G++ +V+ + G S+GFGFV S+ EE +A Sbjct: 292 QGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKA 349 Query: 428 VERLNGYVLDGRALKV 475 V +NG ++ + L V Sbjct: 350 VTEMNGRIVSTKPLYV 365
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 56.6 bits (135), Expect = 6e-08 Identities = 26/73 (35%), Positives = 44/73 (60%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL + A L LF G+V+ V+++ D T + +G+GFV+M+ +E A+ L Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463 Query: 440 NGYVLDGRALKVN 478 NGY + R L+V+ Sbjct: 464 NGYTMGNRVLQVS 476 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 13/90 (14%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLT-------------GRSRGFGFVTM 400 + V LP ++ ++ LF G +E V++I DK G+S G+GFV Sbjct: 151 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 210 Query: 401 STVEEVEEAVERLNGYVLDGRALKVNSGPP 490 ++ E+AV LNG L + +KV+ P Sbjct: 211 VRPQDAEQAVNVLNGLRLQNKTIKVSFARP 240
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 56.6 bits (135), Expect = 6e-08 Identities = 26/73 (35%), Positives = 44/73 (60%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL + A L LF G+V+ V+++ D T + +G+GFV+M+ +E A+ L Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 499 Query: 440 NGYVLDGRALKVN 478 NGY + R L+V+ Sbjct: 500 NGYTMGNRVLQVS 512 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 13/90 (14%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLT-------------GRSRGFGFVTM 400 + V LP ++ ++ LF G +E V++I DK G+S G+GFV Sbjct: 187 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 246 Query: 401 STVEEVEEAVERLNGYVLDGRALKVNSGPP 490 ++ E+AV LNG L + +KV+ P Sbjct: 247 VRPQDAEQAVNVLNGLRLQNKTIKVSFARP 276
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 56.6 bits (135), Expect = 6e-08 Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 3/117 (2%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLF-EQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 +FVG+L +V +QL LF + S ++++D++TG S+G+GFV + +E + A+ Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQS--SRGPSGGDNRVYVGN 601 + G L+GRA+KV + S + S ++ SR S G + + GN Sbjct: 225 MQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGN 281
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 56.2 bits (134), Expect = 8e-08 Identities = 32/73 (43%), Positives = 43/73 (58%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV NL D + L LF G+V V+VI D T + +GFGFVTM+ +E A+ L Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351 Query: 440 NGYVLDGRALKVN 478 NGY L R L+V+ Sbjct: 352 NGYRLGDRVLQVS 364 Score = 53.1 bits (126), Expect = 7e-07 Identities = 25/77 (32%), Positives = 43/77 (55%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 + V LP ++ + LF G +E +++ DK+TG+S G+GFV ++ E+A+ L Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 440 NGYVLDGRALKVNSGPP 490 NG L + +KV+ P Sbjct: 101 NGLRLQTKTIKVSYARP 117 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/65 (36%), Positives = 37/65 (56%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 D ++V LP ++ +L LF Q G + ++ D++TG SRG GF+ E EEA+ Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183 Query: 431 ERLNG 445 + LNG Sbjct: 184 KGLNG 188
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 56.2 bits (134), Expect = 8e-08 Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV-- 430 ++FVG + + L FEQ G +E++E++ D+ +G+ RGF FVT V++ V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQ 164 Query: 431 --ERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNL 604 +NG+ + R K S SS RG R SG F G G DN GN Sbjct: 165 KYHTVNGHNCEVR--KALSKQEMASASSSQRG-RSGSGNFGGGRGGGFGGNDNFGRGGNF 221 Query: 605 S 607 S Sbjct: 222 S 222 Score = 52.4 bits (124), Expect = 1e-06 Identities = 29/72 (40%), Positives = 43/72 (59%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L F L FEQ G++ V+ D T RSRGFGFVT +TVE+V+ A+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAM-N 72 Query: 437 LNGYVLDGRALK 472 + +DGR ++ Sbjct: 73 ARPHKVDGRVVE 84
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 56.2 bits (134), Expect = 8e-08 Identities = 34/109 (31%), Positives = 53/109 (48%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG L D + F+ G++ + ++ DK TG+ RGF FV + V++ V + Sbjct: 123 KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDN 583 + L+G+ + V P DQ G R GG R +RG GG N Sbjct: 183 KQ-HQLNGKMVDVKKALPKQNDQQGGGGGRGGPGG-RAGGNRGNMGGGN 229 Score = 48.9 bits (115), Expect = 1e-05 Identities = 29/86 (33%), Positives = 47/86 (54%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L + L FE+ G++ V V+ D T RSRGFGF+T S ++EA ++ Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEA-QK 90 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSP 514 + +DGR ++ P +D SP Sbjct: 91 SRPHKIDGRVVEPKRA-VPRQDIDSP 115
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 56.2 bits (134), Expect = 8e-08 Identities = 32/73 (43%), Positives = 43/73 (58%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV NL D + L LF G+V V+VI D T + +GFGFVTM+ +E A+ L Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358 Query: 440 NGYVLDGRALKVN 478 NGY L R L+V+ Sbjct: 359 NGYRLGDRVLQVS 371 Score = 53.1 bits (126), Expect = 7e-07 Identities = 25/77 (32%), Positives = 43/77 (55%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 + V LP ++ + LF G +E +++ DK+TG+S G+GFV ++ E+A+ L Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107 Query: 440 NGYVLDGRALKVNSGPP 490 NG L + +KV+ P Sbjct: 108 NGLRLQTKTIKVSYARP 124 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/65 (36%), Positives = 37/65 (56%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 D ++V LP ++ +L LF Q G + ++ D++TG SRG GF+ E EEA+ Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190 Query: 431 ERLNG 445 + LNG Sbjct: 191 KGLNG 195
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 56.2 bits (134), Expect = 8e-08 Identities = 32/73 (43%), Positives = 43/73 (58%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV NL D + L LF G+V V+VI D T + +GFGFVTM+ +E A+ L Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363 Query: 440 NGYVLDGRALKVN 478 NGY L R L+V+ Sbjct: 364 NGYRLGDRVLQVS 376 Score = 53.1 bits (126), Expect = 7e-07 Identities = 25/77 (32%), Positives = 43/77 (55%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 + V LP ++ + LF G +E +++ DK+TG+S G+GFV ++ E+A+ L Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112 Query: 440 NGYVLDGRALKVNSGPP 490 NG L + +KV+ P Sbjct: 113 NGLRLQTKTIKVSYARP 129 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/65 (36%), Positives = 37/65 (56%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 D ++V LP ++ +L LF Q G + ++ D++TG SRG GF+ E EEA+ Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195 Query: 431 ERLNG 445 + LNG Sbjct: 196 KGLNG 200
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 56.2 bits (134), Expect = 8e-08 Identities = 27/71 (38%), Positives = 42/71 (59%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 +D ++V NLP ++ QL +F + GS+ ++ DKLTGR RG FV + EE +EA Sbjct: 211 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 270 Query: 428 VERLNGYVLDG 460 + LN + +G Sbjct: 271 ISALNNVIPEG 281 Score = 43.5 bits (101), Expect = 5e-04 Identities = 23/82 (28%), Positives = 40/82 (48%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S + + V LP + +L LF G + ++ D TG S G+ FV ++ + + Sbjct: 124 SSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQR 183 Query: 425 AVERLNGYVLDGRALKVNSGPP 490 A++ LNG + + LKV+ P Sbjct: 184 AIKVLNGITVRNKRLKVSYARP 205
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 56.2 bits (134), Expect = 8e-08 Identities = 27/71 (38%), Positives = 42/71 (59%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 +D ++V NLP ++ QL +F + GS+ ++ DKLTGR RG FV + EE +EA Sbjct: 209 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 268 Query: 428 VERLNGYVLDG 460 + LN + +G Sbjct: 269 ISALNNVIPEG 279 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/82 (26%), Positives = 40/82 (48%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 + + + V LP + +L LF G + ++ D TG S G+ FV ++ + + Sbjct: 122 ASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQR 181 Query: 425 AVERLNGYVLDGRALKVNSGPP 490 A++ LNG + + LKV+ P Sbjct: 182 AIKVLNGITVRNKRLKVSYARP 203
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 55.8 bits (133), Expect = 1e-07 Identities = 29/79 (36%), Positives = 48/79 (60%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S+ R+ V N+PF L +F Q G + VE+I+++ S+GFGFVT + + Sbjct: 114 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADR 171 Query: 425 AVERLNGYVLDGRALKVNS 481 A E+L+G V++GR ++VN+ Sbjct: 172 AREKLHGTVVEGRKIEVNN 190
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 55.8 bits (133), Expect = 1e-07 Identities = 29/79 (36%), Positives = 48/79 (60%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S+ R+ V N+PF L +F Q G + VE+I+++ S+GFGFVT + + Sbjct: 113 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADR 170 Query: 425 AVERLNGYVLDGRALKVNS 481 A E+L+G V++GR ++VN+ Sbjct: 171 AREKLHGTVVEGRKIEVNN 189
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 55.8 bits (133), Expect = 1e-07 Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 4/105 (3%) Frame = +2 Query: 266 VGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNG 445 V NL + L +FE+ G V V + D+ T SRGF FV + E+A++ ++G Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 446 YVLDGRALKVNSG--PPPPKDQSSPRG--FREQSGGFRQQSSRGP 568 VLDGR L+V PP S RG R GG + SR P Sbjct: 77 AVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSP 121
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 55.8 bits (133), Expect = 1e-07 Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 4/105 (3%) Frame = +2 Query: 266 VGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNG 445 V NL + L +FE+ G V V + D+ T SRGF FV + E+A++ ++G Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 446 YVLDGRALKVNSG--PPPPKDQSSPRG--FREQSGGFRQQSSRGP 568 VLDGR L+V PP S RG R GG + SR P Sbjct: 77 AVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSP 121
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 55.8 bits (133), Expect = 1e-07 Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 4/105 (3%) Frame = +2 Query: 266 VGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNG 445 V NL + L +FE+ G V V + D+ T SRGF FV + E+A++ ++G Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 446 YVLDGRALKVNSG--PPPPKDQSSPRG--FREQSGGFRQQSSRGP 568 VLDGR L+V PP S RG R GG + SR P Sbjct: 77 AVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSP 121
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 55.8 bits (133), Expect = 1e-07 Identities = 38/105 (36%), Positives = 51/105 (48%), Gaps = 4/105 (3%) Frame = +2 Query: 266 VGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNG 445 V NL + L +FE+ G V V + D+ T SRGF FV + E+A++ ++G Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 446 YVLDGRALKVNSG--PPPPKDQSSPRG--FREQSGGFRQQSSRGP 568 VLDGR L+V PP S RG R GG + SR P Sbjct: 77 AVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSP 121
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 55.5 bits (132), Expect = 1e-07 Identities = 31/73 (42%), Positives = 43/73 (58%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV NL D + L +F G+V V+VI D T + +GFGFVTM+ +E A+ L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 440 NGYVLDGRALKVN 478 NGY L R L+V+ Sbjct: 338 NGYRLGDRVLQVS 350 Score = 53.5 bits (127), Expect = 5e-07 Identities = 25/72 (34%), Positives = 42/72 (58%) Frame = +2 Query: 275 LPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYVL 454 LP ++ +L LF G +E +++ DK+TG+S G+GFV ++ E+A+ LNG L Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 455 DGRALKVNSGPP 490 + +KV+ P Sbjct: 106 QTKTIKVSYARP 117 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/65 (36%), Positives = 37/65 (56%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 D ++V LP ++ +L LF Q G + ++ D++TG SRG GF+ E EEA+ Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 431 ERLNG 445 + LNG Sbjct: 184 KGLNG 188
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 55.5 bits (132), Expect = 1e-07 Identities = 31/73 (42%), Positives = 43/73 (58%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV NL D + L +F G+V V+VI D T + +GFGFVTM+ +E A+ L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 440 NGYVLDGRALKVN 478 NGY L R L+V+ Sbjct: 338 NGYRLGDRVLQVS 350 Score = 54.7 bits (130), Expect = 2e-07 Identities = 26/77 (33%), Positives = 44/77 (57%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 + V LP ++ +L LF G +E +++ DK+TG+S G+GFV ++ E+A+ L Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 440 NGYVLDGRALKVNSGPP 490 NG L + +KV+ P Sbjct: 101 NGLRLQTKTIKVSYARP 117 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/65 (36%), Positives = 37/65 (56%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 D ++V LP ++ +L LF Q G + ++ D++TG SRG GF+ E EEA+ Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 431 ERLNG 445 + LNG Sbjct: 184 KGLNG 188
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 55.5 bits (132), Expect = 1e-07 Identities = 31/73 (42%), Positives = 43/73 (58%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV NL D + L +F G+V V+VI D T + +GFGFVTM+ +E A+ L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 440 NGYVLDGRALKVN 478 NGY L R L+V+ Sbjct: 338 NGYRLGDRVLQVS 350 Score = 54.7 bits (130), Expect = 2e-07 Identities = 26/77 (33%), Positives = 44/77 (57%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 + V LP ++ +L LF G +E +++ DK+TG+S G+GFV ++ E+A+ L Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 440 NGYVLDGRALKVNSGPP 490 NG L + +KV+ P Sbjct: 101 NGLRLQTKTIKVSYARP 117 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/65 (36%), Positives = 37/65 (56%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 D ++V LP ++ +L LF Q G + ++ D++TG SRG GF+ E EEA+ Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 431 ERLNG 445 + LNG Sbjct: 184 KGLNG 188
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 55.5 bits (132), Expect = 1e-07 Identities = 31/73 (42%), Positives = 43/73 (58%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV NL D + L +F G+V V+VI D T + +GFGFVTM+ +E A+ L Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338 Query: 440 NGYVLDGRALKVN 478 NGY L R L+V+ Sbjct: 339 NGYRLGDRVLQVS 351 Score = 54.7 bits (130), Expect = 2e-07 Identities = 26/77 (33%), Positives = 44/77 (57%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 + V LP ++ +L LF G +E +++ DK+TG+S G+GFV ++ E+A+ L Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 440 NGYVLDGRALKVNSGPP 490 NG L + +KV+ P Sbjct: 101 NGLRLQTKTIKVSYARP 117 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/65 (36%), Positives = 37/65 (56%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 D ++V LP ++ +L LF Q G + ++ D++TG SRG GF+ E EEA+ Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 431 ERLNG 445 + LNG Sbjct: 184 KGLNG 188
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 55.5 bits (132), Expect = 1e-07 Identities = 32/94 (34%), Positives = 52/94 (55%) Frame = +2 Query: 254 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 L +FVG LP S S QL LF Q G V+ V+ +K + RGFG+VT S +E+V+ A++ Sbjct: 3 LTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK 62 Query: 434 RLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQS 535 + + +G + V ++++ +G E S Sbjct: 63 EITTF--EGCKINVTVAKKKLRNKTKEKGKNENS 94 Score = 42.0 bits (97), Expect = 0.002 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 +E VF+ NL F + +L L +Q G ++ V ++ T S+G F T E ++ Sbjct: 331 NEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQK 390 Query: 425 AV------ERLNGYVLDGRALKVN 478 + G LDGR LKV+ Sbjct: 391 CLLAASPENEAGGLKLDGRQLKVD 414 Score = 39.3 bits (90), Expect = 0.010 Identities = 25/74 (33%), Positives = 38/74 (51%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R+ + NL F L +F Q G+V V I K G+ RGFGFV + E +A++ Sbjct: 114 RLIIRNLSFKCSEDDLKTVFAQFGAVLEVN-IPRKPDGKMRGFGFVQFKNLLEAGKALKG 172 Query: 437 LNGYVLDGRALKVN 478 +N + GR + V+ Sbjct: 173 MNMKEIKGRTVAVD 186
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 55.1 bits (131), Expect = 2e-07 Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV-- 430 ++FVG + + L FEQ G +E++E++ D+ +G+ RGF FVT + V++ V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 431 --ERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNL 604 +NG+ + R K SS RG R SG F G G DN GN Sbjct: 165 KYHTVNGHNCEVR--KALCKQEMASASSSQRG-RSGSGNFGGGRGGGFGGNDNFGRGGNF 221 Query: 605 S 607 S Sbjct: 222 S 222 Score = 53.9 bits (128), Expect = 4e-07 Identities = 30/72 (41%), Positives = 43/72 (59%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L F L FEQ G++ V+ D T RSRGFGFVT +TVEEV+ A+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 72 Query: 437 LNGYVLDGRALK 472 + +DGR ++ Sbjct: 73 ARPHKVDGRVVE 84
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 55.1 bits (131), Expect = 2e-07 Identities = 41/124 (33%), Positives = 60/124 (48%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFV N+ +D +L LF + G E V+VI D +G+S+GFGFV T E ++AV L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 +G +DG+ L V K R + R + P G +Y+ NL ++ Sbjct: 260 HGKSIDGKVLYVGRA---QKKIERLAELRRRFERLRLKEKSRPPGVP--IYIKNLDETIN 314 Query: 620 DSAL 631 D L Sbjct: 315 DEKL 318 Score = 45.4 bits (106), Expect = 1e-04 Identities = 22/75 (29%), Positives = 42/75 (56%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +++ NL +++ +L F GS+ +V+ + G+ +GFG V S+ EE +AV+ + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 440 NGYVLDGRALKVNSG 484 NG ++ + L V G Sbjct: 362 NGRIVGSKPLHVTLG 376 Score = 35.8 bits (81), Expect = 0.11 Identities = 20/72 (27%), Positives = 37/72 (51%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL S+D+ L LF G++ +V+ D S+G+ +V ++ A+ + Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 440 NGYVLDGRALKV 475 NG L+ R + V Sbjct: 166 NGVRLNNRQVYV 177 Score = 34.7 bits (78), Expect = 0.24 Identities = 25/124 (20%), Positives = 50/124 (40%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VG+L V L F AG + + D +T G+G+V + E A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 N +++G+ ++ P + + S G +++ NL ++D Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKS---------------------GVGNIFIKNLDKSID 118 Query: 620 DSAL 631 + AL Sbjct: 119 NRAL 122
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 55.1 bits (131), Expect = 2e-07 Identities = 41/124 (33%), Positives = 60/124 (48%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFV N+ +D +L LF + G E V+VI D +G+S+GFGFV T E ++AV L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 +G +DG+ L V K R + R + P G +Y+ NL ++ Sbjct: 260 HGKSIDGKVLYVGRA---QKKIERLAELRRRFERLRLKEKSRPPGVP--IYIKNLDETIN 314 Query: 620 DSAL 631 D L Sbjct: 315 DEKL 318 Score = 45.4 bits (106), Expect = 1e-04 Identities = 22/75 (29%), Positives = 42/75 (56%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +++ NL +++ +L F GS+ +V+ + G+ +GFG V S+ EE +AV+ + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 440 NGYVLDGRALKVNSG 484 NG ++ + L V G Sbjct: 362 NGRIVGSKPLHVTLG 376 Score = 35.8 bits (81), Expect = 0.11 Identities = 20/72 (27%), Positives = 37/72 (51%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL S+D+ L LF G++ +V+ D S+G+ +V ++ A+ + Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 440 NGYVLDGRALKV 475 NG L+ R + V Sbjct: 166 NGVRLNNRQVYV 177 Score = 34.7 bits (78), Expect = 0.24 Identities = 25/124 (20%), Positives = 50/124 (40%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VG+L V L F AG + + D +T G+G+V + E A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 N +++G+ ++ P + + S G +++ NL ++D Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKS---------------------GVGNIFIKNLDKSID 118 Query: 620 DSAL 631 + AL Sbjct: 119 NRAL 122
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 55.1 bits (131), Expect = 2e-07 Identities = 41/124 (33%), Positives = 60/124 (48%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFV N+ +D +L LF + G E V+VI D +G+S+GFGFV T E ++AV L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 +G +DG+ L V K R + R + P G +Y+ NL ++ Sbjct: 260 HGKSIDGKVLYVGRA---QKKIERLAELRRRFERLRLKEKSRPPGVP--IYIKNLDETIN 314 Query: 620 DSAL 631 D L Sbjct: 315 DEKL 318 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/75 (30%), Positives = 42/75 (56%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +++ NL +++ +L F GS+ +V+ + G+ +GFG V S+ EE +AV+ + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 440 NGYVLDGRALKVNSG 484 NG V+ + L V G Sbjct: 362 NGRVVGSKPLHVTLG 376 Score = 35.8 bits (81), Expect = 0.11 Identities = 20/72 (27%), Positives = 37/72 (51%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL S+D+ L LF G++ +V+ D S+G+ +V ++ A+ + Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 440 NGYVLDGRALKV 475 NG L+ R + V Sbjct: 166 NGVRLNNRQVYV 177 Score = 34.7 bits (78), Expect = 0.24 Identities = 25/124 (20%), Positives = 50/124 (40%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VG+L V L F AG + + D +T G+G+V + E A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 N +++G+ ++ P + + S G +++ NL ++D Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKS---------------------GVGNIFIKNLDKSID 118 Query: 620 DSAL 631 + AL Sbjct: 119 NRAL 122
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 55.1 bits (131), Expect = 2e-07 Identities = 41/124 (33%), Positives = 60/124 (48%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFV N+ +D +L LF + G E V+VI D +G+S+GFGFV T E ++AV L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 +G +DG+ L V K R + R + P G +Y+ NL ++ Sbjct: 260 HGKSIDGKVLYVGRA---QKKIERLAELRRRFERLRLKEKSRPPGVP--IYIKNLDETIN 314 Query: 620 DSAL 631 D L Sbjct: 315 DEKL 318 Score = 45.4 bits (106), Expect = 1e-04 Identities = 22/75 (29%), Positives = 42/75 (56%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +++ NL +++ +L F GS+ +V+ + G+ +GFG V S+ EE +AV+ + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 440 NGYVLDGRALKVNSG 484 NG ++ + L V G Sbjct: 362 NGRIVGSKPLHVTLG 376 Score = 35.8 bits (81), Expect = 0.11 Identities = 20/72 (27%), Positives = 37/72 (51%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL S+D+ L LF G++ +V+ D S+G+ +V ++ A+ + Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 440 NGYVLDGRALKV 475 NG L+ R + V Sbjct: 166 NGVRLNNRQVYV 177 Score = 34.7 bits (78), Expect = 0.24 Identities = 25/124 (20%), Positives = 50/124 (40%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VG+L V L F AG + + D +T G+G+V + E A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 N +++G+ ++ P + + S G +++ NL ++D Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKS---------------------GVGNIFIKNLDKSID 118 Query: 620 DSAL 631 + AL Sbjct: 119 NRAL 122
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 55.1 bits (131), Expect = 2e-07 Identities = 41/124 (33%), Positives = 60/124 (48%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFV N+ +D +L LF + G E V+VI D +G+S+GFGFV T E ++AV L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 +G +DG+ L V K R + R + P G +Y+ NL ++ Sbjct: 260 HGKSIDGKVLYVGRA---QKKIERLAELRRRFERLRLKEKSRPPGVP--IYIKNLDETIN 314 Query: 620 DSAL 631 D L Sbjct: 315 DEKL 318 Score = 45.4 bits (106), Expect = 1e-04 Identities = 22/75 (29%), Positives = 42/75 (56%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +++ NL +++ +L F GS+ +V+ + G+ +GFG V S+ EE +AV+ + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 440 NGYVLDGRALKVNSG 484 NG ++ + L V G Sbjct: 362 NGRIVGSKPLHVTLG 376 Score = 35.8 bits (81), Expect = 0.11 Identities = 20/72 (27%), Positives = 37/72 (51%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL S+D+ L LF G++ +V+ D S+G+ +V ++ A+ + Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 440 NGYVLDGRALKV 475 NG L+ R + V Sbjct: 166 NGVRLNNRQVYV 177 Score = 34.7 bits (78), Expect = 0.24 Identities = 25/124 (20%), Positives = 50/124 (40%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VG+L V L F AG + + D +T G+G+V + E A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 N +++G+ ++ P + + S G +++ NL ++D Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKS---------------------GVGNIFIKNLDKSID 118 Query: 620 DSAL 631 + AL Sbjct: 119 NRAL 122
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 55.1 bits (131), Expect = 2e-07 Identities = 41/124 (33%), Positives = 60/124 (48%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFV N+ +D +L LF + G E V+VI D +G+S+GFGFV T E ++AV L Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 +G +DG+ L V K R + R + P G +Y+ NL ++ Sbjct: 260 HGKSIDGKVLYVGRA---QKKIERLAELRRRFERLRLKEKSRPPGVP--IYIKNLDETIN 314 Query: 620 DSAL 631 D L Sbjct: 315 DEKL 318 Score = 45.4 bits (106), Expect = 1e-04 Identities = 22/75 (29%), Positives = 42/75 (56%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +++ NL +++ +L F GS+ +V+ + G+ +GFG V S+ EE +AV+ + Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 440 NGYVLDGRALKVNSG 484 NG ++ + L V G Sbjct: 362 NGRIVGSKPLHVTLG 376 Score = 35.8 bits (81), Expect = 0.11 Identities = 20/72 (27%), Positives = 37/72 (51%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL S+D+ L LF G++ +V+ D S+G+ +V ++ A+ + Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHM 165 Query: 440 NGYVLDGRALKV 475 NG L+ R + V Sbjct: 166 NGVRLNNRQVYV 177 Score = 34.7 bits (78), Expect = 0.24 Identities = 25/124 (20%), Positives = 50/124 (40%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VG+L V L F AG + + D +T G+G+V + E A+ + Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 N +++G+ ++ P + + S G +++ NL ++D Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKS---------------------GVGNIFIKNLDKSID 118 Query: 620 DSAL 631 + AL Sbjct: 119 NRAL 122
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 55.1 bits (131), Expect = 2e-07 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 4/126 (3%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L + L +F + G + V +I D+ T +SRGF F+T + + A + Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSS----PRGFREQSGGFRQQSSRGPSGGDNRVYVGNL 604 +NG L G+A+KV P P R +S +S+RG GG R ++ + Sbjct: 68 MNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGG-TRGWLPSH 126 Query: 605 SWNVDD 622 ++DD Sbjct: 127 EGHLDD 132
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 54.7 bits (130), Expect = 2e-07 Identities = 25/71 (35%), Positives = 42/71 (59%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 +D ++V NLP ++ +L +F + G++ ++ DKLTGR RG FV + EE +EA Sbjct: 186 KDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEA 245 Query: 428 VERLNGYVLDG 460 + LN + +G Sbjct: 246 ISALNNVIPEG 256 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/77 (27%), Positives = 38/77 (49%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 + V LP + +L LF G + ++ D TG S G+ FV ++ + + A++ + Sbjct: 104 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTV 163 Query: 440 NGYVLDGRALKVNSGPP 490 NG + + LKV+ P Sbjct: 164 NGITVRNKRLKVSYARP 180
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 54.7 bits (130), Expect = 2e-07 Identities = 39/128 (30%), Positives = 60/128 (46%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 E V++ N VD L LF Q G V+V+ D G+S+GFGFV+ E+ +A Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKA 247 Query: 428 VERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLS 607 VE +NG + G+ + V + Q+ + EQ R +G + +Y+ NL Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVN-----LYIKNLD 302 Query: 608 WNVDDSAL 631 +DD L Sbjct: 303 DTIDDEKL 310 Score = 48.5 bits (114), Expect = 2e-05 Identities = 25/76 (32%), Positives = 44/76 (57%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 + + +++ NL ++D +L F GS+ +V+ + GRS+GFGFV S+ EE +A Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKA 349 Query: 428 VERLNGYVLDGRALKV 475 V +NG ++ + L V Sbjct: 350 VTEMNGRIVGSKPLYV 365 Score = 47.8 bits (112), Expect = 3e-05 Identities = 35/124 (28%), Positives = 58/124 (46%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VF+ NL S+D+ L F G++ +V+ D+ S+G+ FV T E ++A+E++ Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 NG +L+ R + V + R RE G + + VY+ N VD Sbjct: 159 NGMLLNDRKVFVG--------RFKSRKEREAELGAKAKEF-------TNVYIKNFGEEVD 203 Query: 620 DSAL 631 D +L Sbjct: 204 DESL 207
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 54.7 bits (130), Expect = 2e-07 Identities = 40/128 (31%), Positives = 61/128 (47%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 E V++ N +D +L +F G+ V+V+ D +GRSRGFGFV EE ++A Sbjct: 189 EFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKA 247 Query: 428 VERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLS 607 V +NG ++GR + V + Q + EQ R +G + +YV NL Sbjct: 248 VTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN-----LYVKNLD 302 Query: 608 WNVDDSAL 631 +DD L Sbjct: 303 DGIDDDRL 310 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/72 (34%), Positives = 39/72 (54%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VF+ NL S+D+ L F G + +V+ D+ SRG+GFV T E A++ + Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158 Query: 440 NGYVLDGRALKV 475 NG +L+ R + V Sbjct: 159 NGMLLNDRKVFV 170 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/76 (31%), Positives = 42/76 (55%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 + + ++V NL +D +L F G++ +V+ + G S+GFGFV S+ EE +A Sbjct: 292 QGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKA 349 Query: 428 VERLNGYVLDGRALKV 475 V +NG ++ + L V Sbjct: 350 VTEMNGRIVSTKPLYV 365
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 54.7 bits (130), Expect = 2e-07 Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Frame = +2 Query: 245 SEDLR-VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 421 S D R VFVGNLP+ ++ + L F GS+ V ++ + LTG RGFG+V + V Sbjct: 287 SRDKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVH 346 Query: 422 EAVERLNGYVLDGRALKV 475 A+ +LN L GR L+V Sbjct: 347 LAL-KLNNSELMGRKLRV 363 Score = 36.2 bits (82), Expect = 0.083 Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 17/141 (12%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVE---------VIYDKLTGRSRGFGFVTMSTVE 412 VFVGNLP + + +L F++ G VE V + KL R F Sbjct: 191 VFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKF--------- 241 Query: 413 EVEEAVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSG-----GFR---QQSSRGP 568 + +N YV+ KD+S+ +++G GFR +S Sbjct: 242 --HPDQKSINAYVVF-------------KDESAAAKALQRNGAQIAEGFRIRVDLASETA 286 Query: 569 SGGDNRVYVGNLSWNVDDSAL 631 S V+VGNL + ++DSAL Sbjct: 287 SRDKRSVFVGNLPYKIEDSAL 307
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 54.7 bits (130), Expect = 2e-07 Identities = 37/105 (35%), Positives = 51/105 (48%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 V+VGN+ +SV +L F GSV V ++ DK TG +GF ++ S V A+ L Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LL 115 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSG 574 NG +L R LKV PK + P R + G + RG G Sbjct: 116 NGSMLHERPLKVT-----PKRTNVPGMSRGRGRGRGRGRGRGRGG 155
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 54.7 bits (130), Expect = 2e-07 Identities = 38/128 (29%), Positives = 65/128 (50%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 E V++ N +D +L LF + G V+V+ D+ +G+S+GFGFV+ E+ ++A Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKA 247 Query: 428 VERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLS 607 V+ +NG L+G+ + V + Q+ + EQ R +G + +YV NL Sbjct: 248 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-----LYVKNLD 302 Query: 608 WNVDDSAL 631 +DD L Sbjct: 303 DGIDDERL 310 Score = 50.1 bits (118), Expect = 6e-06 Identities = 36/124 (29%), Positives = 58/124 (46%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL S+D+ L F G++ +V+ D+ S+G+GFV T E E A+E++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 NG +L+ R + V + R RE G R + VY+ N ++D Sbjct: 159 NGMLLNDRKVFVG--------RFKSRKEREAELGARAKEF-------TNVYIKNFGEDMD 203 Query: 620 DSAL 631 D L Sbjct: 204 DERL 207 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/76 (32%), Positives = 43/76 (56%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 + + ++V NL +D +L F G++ +V+ + GRS+GFGFV S+ EE +A Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKA 349 Query: 428 VERLNGYVLDGRALKV 475 V +NG ++ + L V Sbjct: 350 VTEMNGRIVATKPLYV 365
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 54.7 bits (130), Expect = 2e-07 Identities = 38/128 (29%), Positives = 65/128 (50%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 E V++ N +D +L LF + G V+V+ D+ +G+S+GFGFV+ E+ ++A Sbjct: 189 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKA 247 Query: 428 VERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLS 607 V+ +NG L+G+ + V + Q+ + EQ R +G + +YV NL Sbjct: 248 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-----LYVKNLD 302 Query: 608 WNVDDSAL 631 +DD L Sbjct: 303 DGIDDERL 310 Score = 50.1 bits (118), Expect = 6e-06 Identities = 36/124 (29%), Positives = 58/124 (46%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL S+D+ L F G++ +V+ D+ S+G+GFV T E E A+E++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 NG +L+ R + V + R RE G R + VY+ N ++D Sbjct: 159 NGMLLNDRKVFVG--------RFKSRKEREAELGARAKEF-------TNVYIKNFGEDMD 203 Query: 620 DSAL 631 D L Sbjct: 204 DERL 207 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/76 (32%), Positives = 43/76 (56%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 + + ++V NL +D +L F G++ +V+ + GRS+GFGFV S+ EE +A Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKA 349 Query: 428 VERLNGYVLDGRALKV 475 V +NG ++ + L V Sbjct: 350 VTEMNGRIVATKPLYV 365
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 54.7 bits (130), Expect = 2e-07 Identities = 40/129 (31%), Positives = 60/129 (46%), Gaps = 4/129 (3%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG L +S L F Q G V ++ DK T +SRGFGFV V V Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV-GTVLA 69 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSG----GFRQQSSRGPSGGDNRVYVGNL 604 + LDGR N P P +PRG + + G++Q+ R + N+++VG + Sbjct: 70 SRPHTLDGR----NIDPKP----CTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGI 121 Query: 605 SWNVDDSAL 631 N ++ L Sbjct: 122 PHNCGETEL 130 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 4/122 (3%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S ++FVG +P + +L F + G V V +IYD R RGFGF+T + V++ Sbjct: 111 SRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 170 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSS----PRGFREQSGGFRQQSSRGPSGGDNRVY 592 AV N + D KV P+D S P G + Q ++ G +G + + Sbjct: 171 AV---NMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQWGSRAMQSTANGWTGQPPQTW 227 Query: 593 VG 598 G Sbjct: 228 QG 229
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 54.7 bits (130), Expect = 2e-07 Identities = 28/75 (37%), Positives = 46/75 (61%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R+ V N+PF L +F Q G + VE+I+++ S+GFGFVT + + A E+ Sbjct: 122 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREK 179 Query: 437 LNGYVLDGRALKVNS 481 L+G V++GR ++VN+ Sbjct: 180 LHGTVVEGRKIEVNN 194
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 54.3 bits (129), Expect = 3e-07 Identities = 25/59 (42%), Positives = 38/59 (64%) Frame = +2 Query: 302 LAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVN 478 L +F + G + V ++YD+ + RSRGF FV V++ +EA ER NG LDGR ++V+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 54.3 bits (129), Expect = 3e-07 Identities = 25/59 (42%), Positives = 38/59 (64%) Frame = +2 Query: 302 LAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVN 478 L +F + G + V ++YD+ + RSRGF FV V++ +EA ER NG LDGR ++V+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 54.3 bits (129), Expect = 3e-07 Identities = 25/59 (42%), Positives = 38/59 (64%) Frame = +2 Query: 302 LAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVN 478 L +F + G + V ++YD+ + RSRGF FV V++ +EA ER NG LDGR ++V+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 54.3 bits (129), Expect = 3e-07 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 + VFVG+L + + + F G + V+ D TG+S+G+GFV+ + E A Sbjct: 104 DHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA 163 Query: 428 VERLNGYVLDGRALKVN---SGPPPPK 499 ++++ G L GR ++ N PP PK Sbjct: 164 IQQMGGQWLGGRQIRTNWATRKPPAPK 190
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 54.3 bits (129), Expect = 3e-07 Identities = 31/109 (28%), Positives = 56/109 (51%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG + + L FEQ G +E++E++ D+ +G+ RGF FVT + V++ V + Sbjct: 106 KIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQ 165 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDN 583 + ++ +V ++ +S G + + GG SRG G DN Sbjct: 166 -KYHTVNNHNSQVRKA-LSKQEMASVSGSQRERGGSGNYGSRGGFGNDN 212 Score = 45.8 bits (107), Expect = 1e-04 Identities = 26/72 (36%), Positives = 41/72 (56%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L F L FEQ G++ V+ D + RSRGFGFVT + +EV+ A+ Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAM-T 73 Query: 437 LNGYVLDGRALK 472 + +DGR ++ Sbjct: 74 ARPHKVDGRVVE 85
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 54.3 bits (129), Expect = 3e-07 Identities = 38/128 (29%), Positives = 65/128 (50%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 E V++ N +D +L LF + G V+V+ D+ +G+S+GFGFV+ E+ ++A Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKA 247 Query: 428 VERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLS 607 V+ +NG L+G+ + V + Q+ + EQ R +G + +YV NL Sbjct: 248 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-----LYVKNLD 302 Query: 608 WNVDDSAL 631 +DD L Sbjct: 303 DGIDDERL 310 Score = 50.1 bits (118), Expect = 6e-06 Identities = 36/124 (29%), Positives = 58/124 (46%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL S+D+ L F G++ +V+ D+ S+G+GFV T E E A+E++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 NG +L+ R + V + R RE G R + VY+ N ++D Sbjct: 159 NGMLLNDRKVFVG--------RFKSRKEREAELGARAKEF-------TNVYIKNFGEDMD 203 Query: 620 DSAL 631 D L Sbjct: 204 DERL 207 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/76 (32%), Positives = 43/76 (56%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 + + ++V NL +D +L F G++ +V+ + GRS+GFGFV S+ EE +A Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKA 349 Query: 428 VERLNGYVLDGRALKV 475 V +NG ++ + L V Sbjct: 350 VTEMNGRIVATKPLYV 365
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 54.3 bits (129), Expect = 3e-07 Identities = 38/128 (29%), Positives = 65/128 (50%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 E V++ N +D +L LF + G V+V+ D+ +G+S+GFGFV+ E+ ++A Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKA 247 Query: 428 VERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLS 607 V+ +NG L+G+ + V + Q+ + EQ R +G + +YV NL Sbjct: 248 VDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-----LYVKNLD 302 Query: 608 WNVDDSAL 631 +DD L Sbjct: 303 DGIDDERL 310 Score = 49.7 bits (117), Expect = 7e-06 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 5/129 (3%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL S+D+ L F G++ +V+ D+ S+G+GFV T E E A+E++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGD-----NRVYVGNL 604 NG +L+ R + V G F+ Q R G VY+ N Sbjct: 159 NGMLLNDRKVFV--------------------GRFKSQKEREAELGARAKEFTNVYIKNF 198 Query: 605 SWNVDDSAL 631 ++DD L Sbjct: 199 GEDMDDERL 207 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/76 (32%), Positives = 43/76 (56%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 + + ++V NL +D +L F G++ +V+ + GRS+GFGFV S+ EE +A Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKA 349 Query: 428 VERLNGYVLDGRALKV 475 V +NG ++ + L V Sbjct: 350 VTEMNGRIVATKPLYV 365
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 53.9 bits (128), Expect = 4e-07 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFVG+L + + + F G + V+ D TG+S+G+GFV+ + E A++++ Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 440 NGYVLDGRALKVN---SGPPPPK 499 G L GR ++ N PP PK Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPK 190
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 53.9 bits (128), Expect = 4e-07 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 14/115 (12%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV + + +L +F + G+V V ++ + +T SRGFGF++ STVEE A++ L Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162 Query: 440 NGYVLDGRALKVNS-------GPPPPK-----DQSSPRGF--REQSGGFRQQSSR 562 N GR L V P P K + + R F + GG+R+ + R Sbjct: 163 NSQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRRNSRDFPSNNKDGGYRRNNYR 217
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 53.9 bits (128), Expect = 4e-07 Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 19/118 (16%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S VFVG+L + + + F G + V+ D TG+S+G+GFV+ + E Sbjct: 94 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 153 Query: 425 AVERLNGYVLDGRALKVN---SGPPPPK----------------DQSSPRGFREQSGG 541 A+ + G L GR ++ N PP PK +QSSP+ GG Sbjct: 154 AIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGG 211
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 53.9 bits (128), Expect = 4e-07 Identities = 29/75 (38%), Positives = 44/75 (58%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VF+ NLP+S++ L +F++ G V +V D G SRGFG V T +E+ A++ Sbjct: 221 VFIINLPYSMNWQSLKDMFKECGHVLRADVELD-FNGFSRGFGSVIYPTEDEMIRAIDTF 279 Query: 440 NGYVLDGRALKVNSG 484 NG ++GR L+V G Sbjct: 280 NGMEVEGRVLEVREG 294 Score = 48.1 bits (113), Expect = 2e-05 Identities = 34/124 (27%), Positives = 56/124 (45%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV NL F L LF G V ++I K G RG G V + E V++A+ + Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK--GHHRGMGTVEFTKNESVQDAISKF 181 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 +G + R L V PPP E + F ++++R V++ NL ++++ Sbjct: 182 DGALFMDRKLMVRQDNPPP----------EAAKEFSKKATREEIDNGFEVFIINLPYSMN 231 Query: 620 DSAL 631 +L Sbjct: 232 WQSL 235
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 53.9 bits (128), Expect = 4e-07 Identities = 30/72 (41%), Positives = 43/72 (59%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L F L FEQ G++ V+ D T RSRGFGFVT +TVEEV+ A+ Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 72 Query: 437 LNGYVLDGRALK 472 + +DGR ++ Sbjct: 73 ARPHKVDGRVVE 84 Score = 48.1 bits (113), Expect = 2e-05 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV-- 430 ++FVG + + L FEQ G +E++E++ D+ +G+ RGF FVT + V++ V Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164 Query: 431 --ERLNGYVLDGRALKVNSGPPPPKDQSSPRG 520 +NG+ + R K S SS RG Sbjct: 165 KYHTVNGHNCEVR--KALSKQEMASASSSQRG 194
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 53.9 bits (128), Expect = 4e-07 Identities = 40/128 (31%), Positives = 64/128 (50%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 E V++ N +D +L F Q G+ V+V+ D G+SRGFGFV+ E+ ++A Sbjct: 189 EFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD-HGKSRGFGFVSFERHEDAQKA 247 Query: 428 VERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLS 607 V+ +NG L+G+A+ V + Q+ + EQ R +G + +YV NL Sbjct: 248 VDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-----LYVKNLD 302 Query: 608 WNVDDSAL 631 +DD L Sbjct: 303 DGIDDERL 310 Score = 48.9 bits (115), Expect = 1e-05 Identities = 35/124 (28%), Positives = 58/124 (46%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL S+D+ L F G++ +V+ D+ S+G+GFV T E E A++++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 NG +L+ R + V + R RE G R + VY+ N ++D Sbjct: 159 NGMLLNDRKVFVG--------RFKSRKEREAELGARAKEF-------TNVYIKNFGEDMD 203 Query: 620 DSAL 631 D L Sbjct: 204 DERL 207 Score = 46.6 bits (109), Expect = 6e-05 Identities = 26/76 (34%), Positives = 43/76 (56%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 + + ++V NL +D +L F GS+ +V+ + GRS+GFGFV S+ EE +A Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKA 349 Query: 428 VERLNGYVLDGRALKV 475 V +NG ++ + L V Sbjct: 350 VTEMNGRIVATKPLYV 365
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 53.9 bits (128), Expect = 4e-07 Identities = 30/110 (27%), Positives = 52/110 (47%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 +D ++V NLP ++ QL +F + G + ++ DKLTG+ RG FV + EE +EA Sbjct: 194 KDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEA 253 Query: 428 VERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGG 577 + LN + +G + + ++ + + Q G G GG Sbjct: 254 ISALNNVIPEGASQPLTVRLAEEHGKAKAQHYMSQLGLIGGGGGGGGGGG 303 Score = 43.5 bits (101), Expect = 5e-04 Identities = 23/82 (28%), Positives = 38/82 (46%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S + V LP + +L LF G + ++ D TG S G+ FV + + + Sbjct: 107 SNGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQR 166 Query: 425 AVERLNGYVLDGRALKVNSGPP 490 A++ LNG + + LKV+ P Sbjct: 167 AIKSLNGITVRNKRLKVSYARP 188
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 53.9 bits (128), Expect = 4e-07 Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 19/118 (16%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S VFVG+L + + + F G + V+ D TG+S+G+GFV+ + E Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170 Query: 425 AVERLNGYVLDGRALKVN---SGPPPPK----------------DQSSPRGFREQSGG 541 A+ + G L GR ++ N PP PK +QSSP+ GG Sbjct: 171 AIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGG 228
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 53.9 bits (128), Expect = 4e-07 Identities = 25/71 (35%), Positives = 40/71 (56%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 V++G++P+ Q+ L G V +++++D TGRS+G+ F+ +E AV L Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79 Query: 440 NGYVLDGRALK 472 NGY L R LK Sbjct: 80 NGYQLGSRFLK 90
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 53.5 bits (127), Expect = 5e-07 Identities = 36/110 (32%), Positives = 51/110 (46%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG L V L F Q G+VE E+I DK +G+ RGFGFV + ++A Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAV- 157 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNR 586 + + + G ++V P S GG +SSRG GG R Sbjct: 158 VKFHPIQGHRVEVKKAVPKEDIYSG-------GGGGGSRSSRGGRGGRGR 200 Score = 45.1 bits (105), Expect = 2e-04 Identities = 26/77 (33%), Positives = 43/77 (55%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S+ ++F+G L + L G FE G++ V+ + T RSR FGFVT S VEE + Sbjct: 4 SQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADA 63 Query: 425 AVERLNGYVLDGRALKV 475 A+ + + +DG +++ Sbjct: 64 AM-AASPHAVDGNTVEL 79
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 53.5 bits (127), Expect = 5e-07 Identities = 24/71 (33%), Positives = 42/71 (59%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 +D ++V NLP ++ +L +F + G++ ++ DKLTG+ RG FV + EE +EA Sbjct: 169 KDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEA 228 Query: 428 VERLNGYVLDG 460 + LN + +G Sbjct: 229 ISALNNVIPEG 239 Score = 43.5 bits (101), Expect = 5e-04 Identities = 22/77 (28%), Positives = 38/77 (49%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 + V LP + +L LF G + ++ D TG S G+ FV ++ + + A++ L Sbjct: 87 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSL 146 Query: 440 NGYVLDGRALKVNSGPP 490 NG + + LKV+ P Sbjct: 147 NGVTVRNKRLKVSYARP 163
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 53.5 bits (127), Expect = 5e-07 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 1/102 (0%) Frame = +2 Query: 266 VGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNG 445 + NL + L FE+ G + V + DK + +S+GFGFV + E A++R +G Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82 Query: 446 YVLDGRALKVNSGP-PPPKDQSSPRGFREQSGGFRQQSSRGP 568 ++DGR L+V P D+ RG GG ++ SR P Sbjct: 83 KLVDGRELRVTLAKYDRPSDERGGRG-----GGGGRRRSRSP 119
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 53.5 bits (127), Expect = 5e-07 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 6/111 (5%) Frame = +2 Query: 242 FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 421 + + +F+G LP+ + + +F Q G + + ++ DK TG+S+GF F+ Sbjct: 32 YKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTI 91 Query: 422 EAVERLNGYVLDGRALKVN--SGPPPPKDQSS----PRGFREQSGGFRQQS 556 AV+ NG + GR ++V+ S PKD R +E+ G R S Sbjct: 92 LAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQEKGCGARTPS 142
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 53.1 bits (126), Expect = 7e-07 Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 3/127 (2%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VG+L F+V +QL F Q G+V V V D +T RS G+G+V + ++ A++ L Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPS---GGDNRVYVGNLSW 610 N L G+ ++V S R PS G +++ NL Sbjct: 98 NYIPLYGKPIRV------------------------MYSHRDPSVRRSGAGNIFIKNLDE 133 Query: 611 NVDDSAL 631 ++D AL Sbjct: 134 SIDHKAL 140 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/72 (33%), Positives = 43/72 (59%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL S+D L F G++ +V D +G+S+G+GFV + E ++A+E+L Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184 Query: 440 NGYVLDGRALKV 475 NG +L+ + + V Sbjct: 185 NGMLLNDKQVYV 196 Score = 47.4 bits (111), Expect = 4e-05 Identities = 35/124 (28%), Positives = 57/124 (45%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 V+V NL S L F + G + V+ D G+S+GFGFV ++ AVE L Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESL 275 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 NG+ D + V + ++ R EQ+ ++ + + S + +YV NL ++ Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQN--LKEAADKFQS---SNLYVKNLDPSIS 330 Query: 620 DSAL 631 D L Sbjct: 331 DEKL 334 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/72 (34%), Positives = 42/72 (58%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++V NL S+ +L +F G+V +V+ D G S+G GFV +T EE EA+ +L Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQL 378 Query: 440 NGYVLDGRALKV 475 +G +++ + L V Sbjct: 379 SGKMIESKPLYV 390
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 53.1 bits (126), Expect = 7e-07 Identities = 32/117 (27%), Positives = 57/117 (48%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+GNL + +L LFE+ G+V +V+ + +GFV M T ++ +A++ Sbjct: 8 KLFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRDAIQN 59 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLS 607 LNGY L+ A+KV + +S R P+ +++VGNL+ Sbjct: 60 LNGYTLNEFAIKVEAA----------------------KSRRAPNTPTTKIFVGNLT 94 Score = 50.1 bits (118), Expect = 6e-06 Identities = 25/73 (34%), Positives = 45/73 (61%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVGNL + ++ LF++ G+V +++ R +GFV + V +V++A++ Sbjct: 87 KIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNYGFVHLDCVGDVQDAIKE 138 Query: 437 LNGYVLDGRALKV 475 LNG V+DG+ LKV Sbjct: 139 LNGRVVDGQPLKV 151
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 53.1 bits (126), Expect = 7e-07 Identities = 30/116 (25%), Positives = 57/116 (49%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 RV+VG++ F + + F G ++ + + +D +T + +GF FV E + A+E+ Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNL 604 +NG ++ GR +KV P+ Q +E++ F NR+YV ++ Sbjct: 191 MNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSF------------NRIYVASI 234 Score = 38.5 bits (88), Expect = 0.017 Identities = 18/86 (20%), Positives = 41/86 (47%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R++V ++ + + +FE G + ++ +G+GF+ + + ++EA+ Sbjct: 228 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 287 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSP 514 +N + L G+ L+V PP + P Sbjct: 288 MNLFDLGGQLLRVGRSITPPNALACP 313
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 53.1 bits (126), Expect = 7e-07 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 12/116 (10%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 E+ ++F+G L + L F + G V + D +TGRSRGFGFV E V++ Sbjct: 93 EEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 152 Query: 428 VE----RLNGYVLDGRALKVNSGPPPPK--------DQSSPRGFREQSGGFRQQSS 559 ++ +LNG V+D + K P K + RE GGF + S Sbjct: 153 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVES 208 Score = 39.3 bits (90), Expect = 0.010 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE- 433 ++FVG L ++ F G VE +E+ D T + RGF F+T E V++ +E Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240 Query: 434 RLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWN 613 + + L +KV K+Q + GGF + +RG GG ++ +WN Sbjct: 241 KYHNVGLSKCEIKVAMS----KEQYQQQQQWGSRGGFAGR-ARGRGGGPSQ------NWN 289
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 53.1 bits (126), Expect = 7e-07 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 12/116 (10%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 E+ ++F+G L + L F + G V + D +TGRSRGFGFV E V++ Sbjct: 95 EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154 Query: 428 VE----RLNGYVLDGRALKVNSGPPPPK--------DQSSPRGFREQSGGFRQQSS 559 ++ +LNG V+D + K P K + RE GGF + S Sbjct: 155 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVES 210 Score = 40.8 bits (94), Expect = 0.003 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 8/127 (6%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE- 433 ++FVG L ++ F G VE +E+ D T + RGF F+T E V++ +E Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242 Query: 434 RLNGYVLDGRALKVNSGPPPPKDQ---SSPRGF----REQSGGFRQQSSRGPSGGDNRVY 592 + + L +KV + Q S GF R + GG Q ++G S N+ Y Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGY 302 Query: 593 VGNLSWN 613 GN +N Sbjct: 303 -GNYGYN 308
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 53.1 bits (126), Expect = 7e-07 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 12/116 (10%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 E+ ++F+G L + L F + G V + D +TGRSRGFGFV E V++ Sbjct: 95 EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154 Query: 428 VE----RLNGYVLDGRALKVNSGPPPPK--------DQSSPRGFREQSGGFRQQSS 559 ++ +LNG V+D + K P K + RE GGF + S Sbjct: 155 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVES 210 Score = 40.8 bits (94), Expect = 0.003 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 8/127 (6%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE- 433 ++FVG L ++ F G VE +E+ D T + RGF F+T E V++ +E Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242 Query: 434 RLNGYVLDGRALKVNSGPPPPKDQ---SSPRGF----REQSGGFRQQSSRGPSGGDNRVY 592 + + L +KV + Q S GF R + GG Q ++G S N+ Y Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGY 302 Query: 593 VGNLSWN 613 GN +N Sbjct: 303 -GNYGYN 308
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 53.1 bits (126), Expect = 7e-07 Identities = 29/83 (34%), Positives = 48/83 (57%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R+FVG + F + + L F Q GSV+ V+++ D+ G S+G+GFVT T E+ ++ ++ Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 437 LNGYVLDGRALKVNSGPPPPKDQ 505 L+ + K+N GP K Q Sbjct: 93 AE--KLNYKDKKLNIGPAIRKQQ 113
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 53.1 bits (126), Expect = 7e-07 Identities = 29/83 (34%), Positives = 48/83 (57%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R+FVG + F + + L F Q GSV+ V+++ D+ G S+G+GFVT T E+ ++ ++ Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 437 LNGYVLDGRALKVNSGPPPPKDQ 505 L+ + K+N GP K Q Sbjct: 93 AE--KLNYKDKKLNIGPAIRKQQ 113
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 52.8 bits (125), Expect = 9e-07 Identities = 23/73 (31%), Positives = 40/73 (54%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FVG LP+ + + +F Q G + + ++ DK TG+S+GF F+ AV+ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 440 NGYVLDGRALKVN 478 NG + GR ++V+ Sbjct: 98 NGIKIKGRTIRVD 110
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 52.8 bits (125), Expect = 9e-07 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 2/117 (1%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG + + L FE+ G +E +EV+ D+ +G+ RGF FVT + V++ V + Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186 Query: 437 LNGYVLDGRALKVNSGPPPPKDQS--SPRGFREQSGGFRQQSSRGPSGGDNRVYVGN 601 + ++G +V + QS S RG SG F + GG N GN Sbjct: 187 -KYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGN 242 Score = 49.3 bits (116), Expect = 9e-06 Identities = 29/72 (40%), Positives = 42/72 (58%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L F L FE+ G++ V+ D T RSRGFGFVT S VEEV+ A+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-C 94 Query: 437 LNGYVLDGRALK 472 + +DGR ++ Sbjct: 95 ARPHKVDGRVVE 106
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 52.8 bits (125), Expect = 9e-07 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 2/117 (1%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG + + L FE+ G +E +EV+ D+ +G+ RGF FVT + V++ V + Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186 Query: 437 LNGYVLDGRALKVNSGPPPPKDQS--SPRGFREQSGGFRQQSSRGPSGGDNRVYVGN 601 + ++G +V + QS S RG SG F + GG N GN Sbjct: 187 -KYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGN 242 Score = 49.3 bits (116), Expect = 9e-06 Identities = 29/72 (40%), Positives = 42/72 (58%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L F L FE+ G++ V+ D T RSRGFGFVT S VEEV+ A+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-C 94 Query: 437 LNGYVLDGRALK 472 + +DGR ++ Sbjct: 95 ARPHKVDGRVVE 106
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 52.8 bits (125), Expect = 9e-07 Identities = 28/77 (36%), Positives = 41/77 (53%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VG+LP + QL FEQ G V + V K TG S+G+GFV E + E + Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106 Query: 440 NGYVLDGRALKVNSGPP 490 N Y++ R +K + PP Sbjct: 107 NNYLMGERIIKCHVIPP 123
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 52.8 bits (125), Expect = 9e-07 Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 3/128 (2%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG L +S L F Q G V ++ DK T +SRGFGFV V V Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV-GTVLA 69 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGP---SGGDNRVYVGNLS 607 + LDGR N P P +PRG + + ++ +GP S N+++VG + Sbjct: 70 SRPHTLDGR----NIDPKP----CTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIP 121 Query: 608 WNVDDSAL 631 N ++ L Sbjct: 122 HNCGETEL 129 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/90 (30%), Positives = 48/90 (53%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S+ ++FVG +P + +L F++ G V V +IYD R RGFGF+T + V++ Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSSP 514 AV ++ + + G+ ++V P +P Sbjct: 170 AV-NMHFHDIMGKKVEVKRAEPRDSKNQAP 198
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 52.8 bits (125), Expect = 9e-07 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 2/117 (1%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG + + L FE+ G +E +EV+ D+ +G+ RGF FVT + V++ V + Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186 Query: 437 LNGYVLDGRALKVNSGPPPPKDQS--SPRGFREQSGGFRQQSSRGPSGGDNRVYVGN 601 + ++G +V + QS S RG SG F + GG N GN Sbjct: 187 -KYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGN 242 Score = 49.3 bits (116), Expect = 9e-06 Identities = 29/72 (40%), Positives = 42/72 (58%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L F L FE+ G++ V+ D T RSRGFGFVT S VEEV+ A+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-C 94 Query: 437 LNGYVLDGRALK 472 + +DGR ++ Sbjct: 95 ARPHKVDGRVVE 106
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 52.4 bits (124), Expect = 1e-06 Identities = 25/63 (39%), Positives = 39/63 (61%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FVG +P + +L LFE+AG + + ++ D LTG +RG+ FVT T E +EAV+ Sbjct: 74 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 133 Query: 440 NGY 448 N + Sbjct: 134 NNH 136 Score = 33.9 bits (76), Expect = 0.41 Identities = 22/90 (24%), Positives = 41/90 (45%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV NL +V L F Q G +E V+ + D + F+ + +A+E + Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 301 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFRE 529 NG L+G +++ PP + + + R+ Sbjct: 302 NGKDLEGENIEIVFAKPPDQKRKERKAQRQ 331
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 52.4 bits (124), Expect = 1e-06 Identities = 33/119 (27%), Positives = 56/119 (47%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +++ NLP S+D +L G+ + G V ++ D +G SRG GF M + E+ E + Sbjct: 137 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDT-SGTSRGVGFARMESTEKCEAIITHF 195 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNV 616 N G+ +K G P P D P + GG +++ ++G + R + N V Sbjct: 196 N-----GKYIKTPPGVPAPSD---PLLCKFADGGPKKRQNQGKFVQNGRAWPRNADMGV 246
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 52.4 bits (124), Expect = 1e-06 Identities = 27/65 (41%), Positives = 40/65 (61%) Frame = +2 Query: 254 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 L +FVG LP S S QL LF Q G V+ V+ +K + RGFG+VT S +E+V+ A++ Sbjct: 3 LTLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK 62 Query: 434 RLNGY 448 + + Sbjct: 63 EITTF 67 Score = 39.7 bits (91), Expect = 0.008 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 +E VF+ NL F + L + +Q G ++ V V+ T S+G F T E ++ Sbjct: 321 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQK 380 Query: 425 AVERLN------GYVLDGRALKVN 478 + + G LDGR LKV+ Sbjct: 381 CLAAASPEAEGGGLKLDGRQLKVD 404
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 52.4 bits (124), Expect = 1e-06 Identities = 25/63 (39%), Positives = 39/63 (61%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FVG +P + +L LFE+AG + + ++ D LTG +RG+ FVT T E +EAV+ Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 223 Query: 440 NGY 448 N + Sbjct: 224 NNH 226 Score = 33.9 bits (76), Expect = 0.41 Identities = 22/90 (24%), Positives = 41/90 (45%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV NL +V L F Q G +E V+ + D + F+ + +A+E + Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 391 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFRE 529 NG L+G +++ PP + + + R+ Sbjct: 392 NGKDLEGENIEIVFAKPPDQKRKERKAQRQ 421
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 52.4 bits (124), Expect = 1e-06 Identities = 25/63 (39%), Positives = 39/63 (61%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FVG +P + +L LFE+AG + + ++ D LTG +RG+ FVT T E +EAV+ Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 223 Query: 440 NGY 448 N + Sbjct: 224 NNH 226 Score = 34.3 bits (77), Expect = 0.32 Identities = 22/90 (24%), Positives = 41/90 (45%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV NL +V L F Q G +E V+ + D + F+ + +A+E + Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 391 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFRE 529 NG L+G +++ PP + + + R+ Sbjct: 392 NGKDLEGENIEIVFAKPPDQKRKERKAQRQ 421
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 52.4 bits (124), Expect = 1e-06 Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 1/107 (0%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV L L F+ GSV ++ D+ TG S+GFGFV ST E+ + A E + Sbjct: 504 LFVRGLSEDTTEETLKEAFD--GSVN-ARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAM 560 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFR-QQSSRGPSGG 577 +DG + ++ P Q RG + GGFR + RG GG Sbjct: 561 EDGEIDGNKVTLDFAKPKGDSQRGGRGGFGRGGGFRGGRGGRGGGGG 607 Score = 47.0 bits (110), Expect = 5e-05 Identities = 32/124 (25%), Positives = 58/124 (46%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV N+P+S +L +FE A + I G ++G +V S +E +A+E Sbjct: 326 LFVKNIPYSTTVEELQEIFENAKDIR----IPTGKDGSNKGIAYVEFSNEDEANKALEEK 381 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 G ++GR++ V+ G + Q+ G + +GP G + V NLS++ Sbjct: 382 QGAEIEGRSIFVDF-----------TGEKSQNSG----NKKGPEGDSKVLVVNNLSYSAT 426 Query: 620 DSAL 631 + +L Sbjct: 427 EDSL 430 Score = 45.4 bits (106), Expect = 1e-04 Identities = 30/122 (24%), Positives = 55/122 (45%) Frame = +2 Query: 266 VGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNG 445 V NL +S L +FE+A S+ + + GR++GF F+ S+ E+ ++A++ N Sbjct: 418 VNNLSYSATEDSLREVFEKATSIRIPQN-----QGRAKGFAFIEFSSAEDAKDAMDSCNN 472 Query: 446 YVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVDDS 625 ++GR++++ GG Q RG S ++V LS + + Sbjct: 473 TEIEGRSIRLEF----------------SQGGGPQGGGRGGSAQSKTLFVRGLSEDTTEE 516 Query: 626 AL 631 L Sbjct: 517 TL 518 Score = 38.9 bits (89), Expect = 0.013 Identities = 27/89 (30%), Positives = 48/89 (53%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 SE L +F+GNL + + +L + S + + I D G S+ FG+V S+ EEVE+ Sbjct: 229 SEGLSIFIGNLNSTKEFDELKDALREFFSKKNL-TIQDIRIGNSKKFGYVDFSSEEEVEK 287 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSS 511 A+ +L G + G +K+ K++++ Sbjct: 288 AL-KLTGKKILGTEVKIEKAMAFDKNKTA 315
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 52.0 bits (123), Expect = 1e-06 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 1/125 (0%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 V+V N D +L FE G + +V+ K G+S+GFGFV T E E AV+ L Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243 Query: 440 NGYVL-DGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNV 616 NG + +G++L V + Q + E+ R +S G + +YV NL + Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVN-----LYVKNLDDTI 298 Query: 617 DDSAL 631 DD L Sbjct: 299 DDDRL 303 Score = 47.8 bits (112), Expect = 3e-05 Identities = 34/124 (27%), Positives = 60/124 (48%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VF+ NL ++D+ + F G++ +V D+ G S+G+GFV T E +++++ Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDE-KGNSKGYGFVHFETEEAANTSIDKV 150 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 NG +L+G+ + V + PR RE+ G + + VYV N + + D Sbjct: 151 NGMLLNGKKVYVG--------KFIPRKEREKELGEKAKLF-------TNVYVKNFTEDFD 195 Query: 620 DSAL 631 D L Sbjct: 196 DEKL 199 Score = 45.4 bits (106), Expect = 1e-04 Identities = 26/74 (35%), Positives = 41/74 (55%) Frame = +2 Query: 254 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 + ++V NL ++D +L F G++ +V+ D+ GRS+GFGFV + E AV Sbjct: 287 VNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDE-EGRSKGFGFVCFNAASEATCAVT 345 Query: 434 RLNGYVLDGRALKV 475 LNG V+ + L V Sbjct: 346 ELNGRVVGSKPLYV 359 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/72 (27%), Positives = 39/72 (54%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VG+LP V+ + L F AG V + V D +T RS G+ +V + E A++ + Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63 Query: 440 NGYVLDGRALKV 475 N ++ + +++ Sbjct: 64 NFDLVRNKPIRI 75
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 52.0 bits (123), Expect = 1e-06 Identities = 25/82 (30%), Positives = 45/82 (54%) Frame = +2 Query: 254 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 +++FVGNL + + ++ LF Q G + +++ + FGFV M + E +EA++ Sbjct: 2 VKIFVGNLSPNTTAEEIRSLFSQYGKISECDIV--------KNFGFVHMDSKSEADEAIQ 53 Query: 434 RLNGYVLDGRALKVNSGPPPPK 499 L+ Y+L+G A+ V PK Sbjct: 54 NLHHYMLNGMAMNVEMSKGKPK 75 Score = 35.8 bits (81), Expect = 0.11 Identities = 25/97 (25%), Positives = 47/97 (48%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++ VGN+ S + +L FE+ G V +++ D + FV M VE+ EA+ Sbjct: 79 KLHVGNISSSCTNQELRAKFEEYGPVVECDIVKD--------YAFVHMERVEDAMEAISG 130 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFR 547 L+ G+ + V + +++P G E++G +R Sbjct: 131 LDNTAFQGKLMSVKLS--TSRLRTAP-GMGERTGCYR 164
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 52.0 bits (123), Expect = 1e-06 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 4/110 (3%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV-- 430 ++FVG + + L FE+ G ++ +E+I D+ +G+ RGFGFVT + V++ V Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160 Query: 431 --ERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSG 574 +NG+ + R K S + QSS G + G F SRG G Sbjct: 161 KYHTINGHNAEVR--KALSRQEMQEVQSSRSG---RGGNFGFGDSRGGGG 205 Score = 48.9 bits (115), Expect = 1e-05 Identities = 26/72 (36%), Positives = 41/72 (56%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L F L +EQ G + V+ D + RSRGFGFVT S++ EV+ A+ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-A 68 Query: 437 LNGYVLDGRALK 472 + +DGR ++ Sbjct: 69 ARPHSIDGRVVE 80
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 52.0 bits (123), Expect = 1e-06 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 4/110 (3%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV-- 430 ++FVG + + L FE+ G ++ +E+I D+ +G+ RGFGFVT + V++ V Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172 Query: 431 --ERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSG 574 +NG+ + R K S + QSS G + G F SRG G Sbjct: 173 KYHTINGHNAEVR--KALSRQEMQEVQSSRSG---RGGNFGFGDSRGGGG 217 Score = 48.9 bits (115), Expect = 1e-05 Identities = 26/72 (36%), Positives = 41/72 (56%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L F L +EQ G + V+ D + RSRGFGFVT S++ EV+ A+ Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-A 80 Query: 437 LNGYVLDGRALK 472 + +DGR ++ Sbjct: 81 ARPHSIDGRVVE 92
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 52.0 bits (123), Expect = 1e-06 Identities = 36/124 (29%), Positives = 62/124 (50%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 V++ N +D +L LF + G V+V+ D+ +G+S+GFGFV+ E+ ++AV+ + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 NG L+G+ + V + Q+ + EQ + R +YV NL +D Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQ-----MKQDRITRYQVVNLYVKNLDDGID 306 Query: 620 DSAL 631 D L Sbjct: 307 DERL 310 Score = 47.0 bits (110), Expect = 5e-05 Identities = 36/124 (29%), Positives = 57/124 (45%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV NL S+++ L G++ V+ D+ S+G+GFV T E E A++++ Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 NG +L+GR + V Q R RE G R + VY+ N ++D Sbjct: 159 NGMLLNGRKVFVG--------QFKSRKEREAELGARAKEF-------PNVYIKNFGEDMD 203 Query: 620 DSAL 631 D L Sbjct: 204 DERL 207 Score = 46.2 bits (108), Expect = 8e-05 Identities = 25/74 (33%), Positives = 42/74 (56%) Frame = +2 Query: 254 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 + ++V NL +D +L F G++ +V+ + GRS+GFGFV S+ EE +AV Sbjct: 294 VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVT 351 Query: 434 RLNGYVLDGRALKV 475 +NG ++ + L V Sbjct: 352 EMNGRIVATKPLYV 365
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 51.6 bits (122), Expect = 2e-06 Identities = 39/124 (31%), Positives = 57/124 (45%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 V+V NLP + +L F + G + V+ D+ +G SR FGFV E AVE++ Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKM 289 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 NG L L V + + R EQ R + S+G + +Y+ NL +VD Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGAN-----LYLKNLDDSVD 344 Query: 620 DSAL 631 D L Sbjct: 345 DEKL 348 Score = 49.3 bits (116), Expect = 9e-06 Identities = 24/72 (33%), Positives = 43/72 (59%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL S+D+ L F G++ +V D +TGRS+G+GFV E + A+++L Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196 Query: 440 NGYVLDGRALKV 475 NG +++ + + V Sbjct: 197 NGMLMNDKQVFV 208 Score = 46.2 bits (108), Expect = 8e-05 Identities = 26/77 (33%), Positives = 43/77 (55%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S+ +++ NL SVD +L +F + G+V +V+ + G SRGFGFV S EE Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALR 387 Query: 425 AVERLNGYVLDGRALKV 475 A+ +NG ++ + L + Sbjct: 388 ALSEMNGKMIGRKPLYI 404
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 51.6 bits (122), Expect = 2e-06 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 8/114 (7%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFE-QAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 + +FVG+L + A L LF+ + SV+ V V+ D LTG SR FGFV +E A Sbjct: 191 EFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRA 250 Query: 428 VERLNGYVLDGRALKVNSGPPP-------PKDQSSPRGFREQSGGFRQQSSRGP 568 + ++G GRAL+V P + Q + ++Q Q+ + GP Sbjct: 251 LIEMSGKWFQGRALRVAYATPRNNMMLQLQEQQQQQQQLQQQHQQLDQEDNNGP 304 Score = 34.3 bits (77), Expect = 0.32 Identities = 24/108 (22%), Positives = 42/108 (38%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFVG L QL LF+ G + V + + GFV + E +++ L Sbjct: 362 VFVGGLVPKTTEFQLRSLFKPFGPILNVRI------PNGKNCGFVKFEKRIDAEASIQGL 415 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDN 583 G+++ G ++++ G P + + S R PS + Sbjct: 416 QGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGLRAPSAASS 463
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 51.6 bits (122), Expect = 2e-06 Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 3/128 (2%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG L +S L F Q G V ++ DK T +SRGFGFV V V Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV-GTVLA 69 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGP---SGGDNRVYVGNLS 607 + LDGR N P P +PRG + + ++ +GP + N+++VG + Sbjct: 70 SRPHTLDGR----NIDPKP----CTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIP 121 Query: 608 WNVDDSAL 631 N ++ L Sbjct: 122 HNCGETEL 129 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/90 (30%), Positives = 48/90 (53%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S+ ++FVG +P + +L F++ G V V +IYD R RGFGF+T + V++ Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSSP 514 AV ++ + + G+ ++V P +P Sbjct: 170 AV-NMHFHDIMGKKVEVKRAEPRDSKSQAP 198
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 51.6 bits (122), Expect = 2e-06 Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 9/96 (9%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFV NL + V +L +F AG V +++ DK G+SRG G VT E +A+ Sbjct: 204 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGIVTFEQSIEAVQAISMF 262 Query: 440 NGYVL---------DGRALKVNSGPPPPKDQSSPRG 520 NG +L D RAL PP + Q P G Sbjct: 263 NGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHG 298 Score = 50.8 bits (120), Expect = 3e-06 Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 1/107 (0%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLF-EQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 R F+ N+PF V L L E+ G V VE++ D G+SRG V E +++A E Sbjct: 70 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDA-EGKSRGCAVVEFKMEESMKKAAE 128 Query: 434 RLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSG 574 LN + L GR LKV P + + + +GG GP G Sbjct: 129 VLNKHSLSGRPLKVKEDPDGEHARRAMQKVMATTGGM----GMGPGG 171 Score = 42.0 bits (97), Expect = 0.002 Identities = 24/73 (32%), Positives = 35/73 (47%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FV NLPF L F + G V ++ + G+S+G G V + E E A Sbjct: 652 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 709 Query: 437 LNGYVLDGRALKV 475 +NG L GR + V Sbjct: 710 MNGMKLSGREIDV 722
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 51.6 bits (122), Expect = 2e-06 Identities = 28/83 (33%), Positives = 47/83 (56%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R+FVG + F + L F Q GSV+ V+++ D+ G S+G+GF+T T E+ ++ ++ Sbjct: 34 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQE 92 Query: 437 LNGYVLDGRALKVNSGPPPPKDQ 505 L+ + K+N GP K Q Sbjct: 93 AE--KLNYKDKKLNIGPAIRKQQ 113
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 51.6 bits (122), Expect = 2e-06 Identities = 30/85 (35%), Positives = 50/85 (58%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R+FVG P S +L FE+ +V+ V+++ L G+S+G+GF+T T ++ EE + + Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDVKMV-KSLDGQSKGYGFITFETEDQAEE-IRK 125 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSS 511 L L+ R+ K+N GP K S+ Sbjct: 126 LTPKQLEFRSRKLNLGPAIRKINSN 150
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 51.2 bits (121), Expect = 2e-06 Identities = 30/103 (29%), Positives = 50/103 (48%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG + + L FE+ G +E E+I DK +G+ RGFGFVT + + V++ V + Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQ 160 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRG 565 + ++G +V + Q + G F SRG Sbjct: 161 -KYHTINGHNAEVRKALSKQEMQDVQNTRNNRGGNFGFGDSRG 202 Score = 50.1 bits (118), Expect = 6e-06 Identities = 26/72 (36%), Positives = 40/72 (55%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L F L +EQ G + V+ D + RSRGFGFVT S + EV+ A+ Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS- 68 Query: 437 LNGYVLDGRALK 472 + +DGR ++ Sbjct: 69 ARPHTIDGRVVE 80
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 51.2 bits (121), Expect = 2e-06 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLF-EQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 RVF+ N+P+ + + L E+ G V VE+ D G+SRG G V E V++A+E Sbjct: 101 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKD-AEGKSRGCGVVEFKDEEFVKKALE 159 Query: 434 RLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGG 541 +N Y L GR L + P D + R +++GG Sbjct: 160 TMNKYDLSGRPLNIKEDP----DGENARRALQRTGG 191 Score = 48.5 bits (114), Expect = 2e-05 Identities = 35/105 (33%), Positives = 47/105 (44%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV NL F V +L +F AG+V+ ++ DK G+SRG G VT E +A+ Sbjct: 235 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDK-DGKSRGMGTVTFEQAIEAVQAISMF 293 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSG 574 NG L R + V D+S P G Q RG G Sbjct: 294 NGQFLFDRPMHVKM-----DDKSVPHEEYRSHDGKTPQLPRGLGG 333 Score = 45.4 bits (106), Expect = 1e-04 Identities = 26/77 (33%), Positives = 40/77 (51%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S+ ++FV NLPF + +L F Q G V E+ + G+S+G G V + E E+ Sbjct: 520 SKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN--GKSKGCGTVRFDSPESAEK 577 Query: 425 AVERLNGYVLDGRALKV 475 A +NG + GR + V Sbjct: 578 ACRIMNGIKISGREIDV 594
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 50.8 bits (120), Expect = 3e-06 Identities = 38/129 (29%), Positives = 57/129 (44%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 ++D ++VG L V + L L QAG V V + D++T +GFGFV E+ + Sbjct: 10 NQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADY 69 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNL 604 A++ LN L G+ +KVN K+ G N ++VGNL Sbjct: 70 AIKILNMIKLYGKPIKVNKASAHEKNMDV---------------------GAN-IFVGNL 107 Query: 605 SWNVDDSAL 631 VD+ L Sbjct: 108 DPEVDEKLL 116 Score = 45.8 bits (107), Expect = 1e-04 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMV-EVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 +FVGNL VD L F G + V +++ D +G S+GF F+ ++ E + A+E Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161 Query: 437 LNGYVLDGRALKVN 478 +NG L RA+ V+ Sbjct: 162 MNGQFLCNRAITVS 175
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 50.8 bits (120), Expect = 3e-06 Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 9/96 (9%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFV NL + V +L +F AG V +++ DK G+SRG G VT E +A+ Sbjct: 165 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMF 223 Query: 440 NGYVL---------DGRALKVNSGPPPPKDQSSPRG 520 NG +L D RAL PP + Q P G Sbjct: 224 NGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHG 259 Score = 49.7 bits (117), Expect = 7e-06 Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLF-EQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 R F+ N+PF V L L E+ G V VE++ D G+SRG V E +++A E Sbjct: 70 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDA-EGKSRGCAVVEFKMEESMKKAAE 128 Query: 434 RLNGYVLDGRALKVNSGP 487 LN + L GR LKV P Sbjct: 129 VLNKHSLSGRPLKVKEDP 146 Score = 42.0 bits (97), Expect = 0.002 Identities = 24/73 (32%), Positives = 35/73 (47%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FV NLPF L F + G V ++ + G+S+G G V + E E A Sbjct: 613 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 670 Query: 437 LNGYVLDGRALKV 475 +NG L GR + V Sbjct: 671 MNGMKLSGREIDV 683
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 50.8 bits (120), Expect = 3e-06 Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 9/96 (9%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFV NL + V +L +F AG V +++ DK G+SRG G VT E +A+ Sbjct: 205 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMF 263 Query: 440 NGYVL---------DGRALKVNSGPPPPKDQSSPRG 520 NG +L D RAL PP + Q P G Sbjct: 264 NGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHG 299 Score = 50.8 bits (120), Expect = 3e-06 Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 1/107 (0%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLF-EQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 R F+ N+PF V L L E+ G V VE++ D G+SRG V E +++A E Sbjct: 71 RAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDA-EGKSRGCAVVEFKMEESMKKAAE 129 Query: 434 RLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSG 574 LN + L GR LKV P + + + +GG GP G Sbjct: 130 VLNKHSLSGRPLKVKEDPDGEHARRAMQKVMATTGGM----GMGPGG 172 Score = 42.0 bits (97), Expect = 0.002 Identities = 24/73 (32%), Positives = 35/73 (47%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FV NLPF L F + G V ++ + G+S+G G V + E E A Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 710 Query: 437 LNGYVLDGRALKV 475 +NG L GR + V Sbjct: 711 MNGMKLSGREIDV 723
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 50.8 bits (120), Expect = 3e-06 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 1/124 (0%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +++ NLP S+D +L G+ + G V ++ D +G SRG GF M + E+ E + Sbjct: 139 LYISNLPLSMDEQELEGMLKPFGQVISTRILRDT-SGASRGVGFARMESTEKCEAIITHF 197 Query: 440 NG-YVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNV 616 NG Y+ + S P K R+ G + Q P GD +G ++ Sbjct: 198 NGKYIKTPPGVAAPSDPLLCKFADGGPKKRQSQGRYVQNGRAWPRNGD----MGGMALTY 253 Query: 617 DDSA 628 D +A Sbjct: 254 DPTA 257
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 50.4 bits (119), Expect = 4e-06 Identities = 29/72 (40%), Positives = 41/72 (56%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L F L FEQ G + V+ D T RSRGFGFVT S VEEV+ ++ Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMS- 86 Query: 437 LNGYVLDGRALK 472 + +DGR ++ Sbjct: 87 ARPHKVDGRVVE 98 Score = 43.9 bits (102), Expect = 4e-04 Identities = 27/107 (25%), Positives = 48/107 (44%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG + + L E G +E +EV+ D+ +G+ RGF FVT + V++ V + Sbjct: 119 KIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 178 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGG 577 + ++G +V + Q++ GG G GG Sbjct: 179 -KYHTINGHNCEVKKALSKQEMQTASAQRGRGGGGSNFMGRGGNYGG 224
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 50.4 bits (119), Expect = 4e-06 Identities = 31/95 (32%), Positives = 50/95 (52%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG L + + FEQ G VE +++DK T R RGFGFVT E+V E V Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEN-EDVVEKVCE 169 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGG 541 ++ + ++ + ++ PK+ P G R ++ G Sbjct: 170 IHFHEINNKMVECKKA--QPKEVMFPPGTRGRARG 202 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/58 (32%), Positives = 30/58 (51%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 ++F+G L + L F + G + V+ D T RSRGFGFVT + V++ + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 50.4 bits (119), Expect = 4e-06 Identities = 27/78 (34%), Positives = 45/78 (57%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 ++D V+VG L V L LF QAG V + D++TG+ +G+GFV + E+ + Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69 Query: 425 AVERLNGYVLDGRALKVN 478 A++ +N L G+ ++VN Sbjct: 70 AIKIMNMIKLYGKPIRVN 87 Score = 43.1 bits (100), Expect = 7e-04 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSV-EMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 +F+GNL +D L F G + + +++ D TG S+G+ F+ ++ + + A+E Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161 Query: 437 LNGYVLDGRALKVN 478 +NG L R + V+ Sbjct: 162 MNGQYLCNRPITVS 175
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 50.4 bits (119), Expect = 4e-06 Identities = 28/88 (31%), Positives = 48/88 (54%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG L + + FEQ G V+ +++DK T R RGFGFVT + E++ E V Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDIVEKVCE 168 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRG 520 ++ + ++ + ++ PK+ SP G Sbjct: 169 IHFHEINNKMVECKKA--QPKEVMSPTG 194 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/71 (33%), Positives = 38/71 (53%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L + L F Q G V+ V+ D LT RSRGFGFVT V++ + + Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Query: 437 LNGYVLDGRAL 469 + + LD + + Sbjct: 81 -SRHELDSKTI 90
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 50.4 bits (119), Expect = 4e-06 Identities = 28/88 (31%), Positives = 48/88 (54%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG L + + FEQ G V+ +++DK T R RGFGFVT + E++ E V Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDIVEKVCE 168 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRG 520 ++ + ++ + ++ PK+ SP G Sbjct: 169 IHFHEINNKMVECKKA--QPKEVMSPTG 194 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/71 (33%), Positives = 38/71 (53%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L + L F Q G V+ V+ D LT RSRGFGFVT V++ + + Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Query: 437 LNGYVLDGRAL 469 + + LD + + Sbjct: 81 -SRHELDSKTI 90
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 50.4 bits (119), Expect = 4e-06 Identities = 28/88 (31%), Positives = 48/88 (54%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG L + + FEQ G V+ +++DK T R RGFGFVT + E++ E V Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDIVEKVCE 168 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRG 520 ++ + ++ + ++ PK+ SP G Sbjct: 169 IHFHEINNKMVECKKA--QPKEVMSPTG 194 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/71 (33%), Positives = 38/71 (53%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L + L F Q G V+ V+ D LT RSRGFGFVT V++ + + Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80 Query: 437 LNGYVLDGRAL 469 + + LD + + Sbjct: 81 -SRHELDSKTI 90
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 50.4 bits (119), Expect = 4e-06 Identities = 29/72 (40%), Positives = 41/72 (56%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L F L FEQ G + V+ D T RSRGFGFVT S VEEV+ ++ Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMS- 86 Query: 437 LNGYVLDGRALK 472 + +DGR ++ Sbjct: 87 ARPHKVDGRVVE 98 Score = 45.4 bits (106), Expect = 1e-04 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 3/111 (2%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE-AVE 433 ++FVG + + L FE G +E +EV+ D+ +G+ RGF FVT + V++ V+ Sbjct: 119 KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 178 Query: 434 RLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPS--GGD 580 + + L +K + S+ RG + GG RG + GGD Sbjct: 179 KYHTINLHNCEVKKALSKQEMQTASAQRG---RGGGGSNFMGRGGNYGGGD 226
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 50.4 bits (119), Expect = 4e-06 Identities = 33/110 (30%), Positives = 51/110 (46%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++ V NL F V A + LF + G+++ V YD+ +GRS G V + +A+++ Sbjct: 105 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 163 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNR 586 NG LDGR + + Q P + G R + S G GG R Sbjct: 164 YNGVPLDGRPMNIQLVTSQIDTQRRPAQSINRGGMTRNRGSGGFGGGGTR 213
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 50.4 bits (119), Expect = 4e-06 Identities = 31/95 (32%), Positives = 50/95 (52%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG L + + FEQ G VE +++DK T R RGFGFVT E+V E V Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEN-EDVVEKVCE 169 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGG 541 ++ + ++ + ++ PK+ P G R ++ G Sbjct: 170 IHFHEINNKMVECKKA--QPKEVMFPPGTRGRARG 202 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/58 (32%), Positives = 30/58 (51%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 ++F+G L + L F + G + V+ D T RSRGFGFVT + V++ + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 50.4 bits (119), Expect = 4e-06 Identities = 37/124 (29%), Positives = 57/124 (45%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VF+ NL S+D+ L F G++ +V D + GRS+G+GFV E + A+++L Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 192 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 NG +L+ + + V F + R +S PS VYV NL + Sbjct: 193 NGMLLNDKQVFVGH-------------FVRRQDRARSESGAVPS--FTNVYVKNLPKEIT 237 Query: 620 DSAL 631 D L Sbjct: 238 DDEL 241 Score = 47.4 bits (111), Expect = 4e-05 Identities = 37/124 (29%), Positives = 56/124 (45%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 V+V NLP + +L F + G + V+ D+ +G SR FGFV + E AVE++ Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 285 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 NG L L V + R EQ R + +G + +Y+ NL +V+ Sbjct: 286 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQG-----SNLYLKNLDDSVN 340 Query: 620 DSAL 631 D L Sbjct: 341 DEKL 344 Score = 42.7 bits (99), Expect = 9e-04 Identities = 25/72 (34%), Positives = 42/72 (58%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +++ NL SV+ +L +F + G+V +V+ + G SRGFGFV S EE A++ + Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKEM 388 Query: 440 NGYVLDGRALKV 475 NG ++ + L V Sbjct: 389 NGKMIGRKPLYV 400
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 50.1 bits (118), Expect = 6e-06 Identities = 22/73 (30%), Positives = 41/73 (56%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FVG + S+ +L+ LF + G + +++IYDK G G+GF++ + ++ L Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 440 NGYVLDGRALKVN 478 NG ++G L +N Sbjct: 257 NGRTVNGSTLFIN 269 Score = 30.0 bits (66), Expect = 6.0 Identities = 12/34 (35%), Positives = 20/34 (58%) Frame = +2 Query: 377 RGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVN 478 +G+GF+ + E+ A+E NG++ G L VN Sbjct: 381 KGYGFIKLINHEQALAAIETFNGFMWHGNRLVVN 414 Score = 29.6 bits (65), Expect = 7.8 Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 19/131 (14%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIY-------------------DKLTG 370 ++ ++V ++P S L ++ G + V+VI D G Sbjct: 538 QESNLYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVG 597 Query: 371 RSRGFGFVTMSTVEEVEEAVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQ 550 SRG+GFV+ + + +A+ +GY + KDQ F ++ G Sbjct: 598 SSRGYGFVSFESPLDAAKAILNTDGYQVS-------------KDQVLSVSFAQKRGNLSS 644 Query: 551 QSSRGPSGGDN 583 S DN Sbjct: 645 SDDDDQSQTDN 655
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 50.1 bits (118), Expect = 6e-06 Identities = 24/74 (32%), Positives = 38/74 (51%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++++G L D L F V V+ +K+TGRSRG+GFV + + A+ Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91 Query: 437 LNGYVLDGRALKVN 478 +NG L+G + VN Sbjct: 92 MNGQELNGFNISVN 105
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 49.7 bits (117), Expect = 7e-06 Identities = 35/128 (27%), Positives = 64/128 (50%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 E V++ N ++ +L +F + G V+V+ D G+S+GFGFV+ E+ ++A Sbjct: 189 EFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKA 247 Query: 428 VERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLS 607 V+ +NG ++G+++ V + Q+ + EQ R +G + +YV NL Sbjct: 248 VDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-----LYVKNLD 302 Query: 608 WNVDDSAL 631 +DD L Sbjct: 303 DGIDDERL 310 Score = 47.0 bits (110), Expect = 5e-05 Identities = 24/72 (33%), Positives = 42/72 (58%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL S+D+ L F G++ +V+ D+ S+G+GFV T E E A++++ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158 Query: 440 NGYVLDGRALKV 475 NG +L+ R + V Sbjct: 159 NGMLLNDRKVFV 170 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/76 (32%), Positives = 43/76 (56%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 + + ++V NL +D +L F G++ +V+ + GRS+GFGFV S+ EE +A Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKA 349 Query: 428 VERLNGYVLDGRALKV 475 V +NG ++ + L V Sbjct: 350 VTEMNGRIVATKPLYV 365
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 49.7 bits (117), Expect = 7e-06 Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLF-EQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 RVF+ N+P+ + + L E+ G V VE+ D G+SRG G V E V++A+E Sbjct: 92 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKD-AEGKSRGCGVVEFKDEEFVKKALE 150 Query: 434 RLNGYVLDGRALKVNSGP 487 +N Y L GR L + P Sbjct: 151 TMNKYDLSGRPLNIKEDP 168 Score = 46.6 bits (109), Expect = 6e-05 Identities = 34/105 (32%), Positives = 46/105 (43%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV NL F V +L +F AG+V+ ++ DK G+SRG G VT E +A+ Sbjct: 226 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDK-DGKSRGMGTVTFEQAIEAVQAISMF 284 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSG 574 NG L R + V D+S P Q RG G Sbjct: 285 NGQFLFDRPMHVKM-----DDKSVPHEDYRSHDSKTSQLPRGLGG 324 Score = 46.2 bits (108), Expect = 8e-05 Identities = 26/77 (33%), Positives = 40/77 (51%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S+ ++FV NLPF + +L F Q G V E+ + G+S+G G V + E E+ Sbjct: 511 SKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN--GKSKGCGTVRFESAESAEK 568 Query: 425 AVERLNGYVLDGRALKV 475 A +NG + GR + V Sbjct: 569 ACRIMNGIKISGREIDV 585
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 49.7 bits (117), Expect = 7e-06 Identities = 26/72 (36%), Positives = 41/72 (56%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L F L +EQ G++ V+ D + RSRGFGFVT S + EV+ A+ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAM-A 68 Query: 437 LNGYVLDGRALK 472 + +DGR ++ Sbjct: 69 TRPHTIDGRVVE 80 Score = 48.5 bits (114), Expect = 2e-05 Identities = 28/103 (27%), Positives = 49/103 (47%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG + + L FE+ G ++ +E+I DK +G+ RGF FVT + V++ V + Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQ 160 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRG 565 + ++G +V + Q + G F SRG Sbjct: 161 -KYHTINGHNAEVRKALSKQEMQDVQNTRNNRGGNFGFGDSRG 202
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 49.3 bits (116), Expect = 9e-06 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 5/109 (4%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 V+VGNLP + ++ LF + G V +++ K+ R G+ FV + E+A+ Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGR 65 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSG-----GFRQQSSRGPS 571 +GY DG L+V + RG G G SRGPS Sbjct: 66 DGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPS 114
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 49.3 bits (116), Expect = 9e-06 Identities = 26/76 (34%), Positives = 44/76 (57%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 + + +F+ NL VD +L F G++ +++ D+ G+S+GFGFV +T EE +A Sbjct: 362 QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDE-QGKSKGFGFVCYTTPEEANKA 420 Query: 428 VERLNGYVLDGRALKV 475 V +N +L G+ L V Sbjct: 421 VTEMNQRMLAGKPLYV 436 Score = 46.2 bits (108), Expect = 8e-05 Identities = 24/72 (33%), Positives = 41/72 (56%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VF+ NL ++D+ L F G + +V D+L G ++G+GFV +VE A+E + Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDEL-GNAKGYGFVHFDSVESANAAIEHV 228 Query: 440 NGYVLDGRALKV 475 NG +L+ + + V Sbjct: 229 NGMLLNDKKVYV 240 Score = 44.7 bits (104), Expect = 2e-04 Identities = 32/124 (25%), Positives = 56/124 (45%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 V++ NL + + + LF Q G + + ++ D+ + RGFGFV + E ++AV+ L Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDEL 321 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 N G+ L V + + R EQ + +G + +++ NL VD Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVN-----LFIKNLQDEVD 376 Query: 620 DSAL 631 D L Sbjct: 377 DERL 380
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 49.3 bits (116), Expect = 9e-06 Identities = 23/63 (36%), Positives = 39/63 (61%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFVG +P + +L LFE+AG + + ++ D L+G++RG+ F+T E +EAV+ Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 226 Query: 440 NGY 448 + Y Sbjct: 227 DSY 229 Score = 33.9 bits (76), Expect = 0.41 Identities = 22/92 (23%), Positives = 41/92 (44%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV NL +V L F + G +E V+ + D + FV +A++ + Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 394 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQS 535 NG ++G +++ PP K + + R+ S Sbjct: 395 NGKEIEGEEIEIVLAKPPDKKRKERQAARQAS 426
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 48.9 bits (115), Expect = 1e-05 Identities = 26/77 (33%), Positives = 39/77 (50%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 +E R+FV NLP++ L LF + G + + D LT + +GF F+T E + Sbjct: 399 AESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVK 458 Query: 425 AVERLNGYVLDGRALKV 475 A ++G V GR L V Sbjct: 459 AYSEVDGQVFQGRMLHV 475 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGR---SRGFGFVTMSTVEEVEEAV 430 +F+ NL F +L +F + G+V+ + K S GFGFV E+ ++A+ Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791 Query: 431 ERLNGYVLDGRALKV 475 ++L G+V+DG L+V Sbjct: 792 KQLQGHVVDGHKLEV 806 Score = 36.6 bits (83), Expect = 0.064 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKL-TGRSRGFGFVTMSTVEEVEEAVE 433 ++ V N+PF S ++ LF G ++ V + TG RGFGFV T ++ + A Sbjct: 833 KILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFN 892 Query: 434 RL 439 L Sbjct: 893 AL 894
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/91 (29%), Positives = 48/91 (52%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 E ++F+G L + L F + G+V ++++ D TGRSRGFGF++ V+E Sbjct: 157 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEV 216 Query: 428 VERLNGYVLDGRALKVNSGPPPPKDQSSPRG 520 V+ ++LDG+ ++ P+D+ G Sbjct: 217 VK--TQHILDGKV--IDPKRAIPRDEQDKTG 243 Score = 46.6 bits (109), Expect = 6e-05 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG + V + F Q G++ +++ DK TG+SRGFGFVT + + V+ + Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ- 302 Query: 437 LNGYV-LDGRALKVNSGPPPPKDQSSPRGFREQSGG--FRQQSSRGPSGGDNRVY 592 N ++ R +++ P Q S G R+ + G G N++Y Sbjct: 303 -NKFIDFKDRKIEIKRAEPRHMQQKSSNNGGNNGGNNMNRRGGNFGNQGDFNQMY 356
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 48.5 bits (114), Expect = 2e-05 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 6/133 (4%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQA-GSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 + +FVG+L + + + L F S ++I D +TG SR +GFV S+ +E + A Sbjct: 181 EFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHA 240 Query: 428 VERLNGYVLDGRALKVNSGPPPPKDQ---SSPRGFREQSGGFRQ--QSSRGPSGGDNRVY 592 + + GY+ GR L+++ P + S G S RQ Q + V+ Sbjct: 241 LMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVF 300 Query: 593 VGNLSWNVDDSAL 631 VG L+ N+ + L Sbjct: 301 VGGLASNLSEKDL 313
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 48.5 bits (114), Expect = 2e-05 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VGN+ + + +L F GSV V ++ DK +G +GF ++ S E V ++ L Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL 231 Query: 440 NGYVLDGRALKV-----NSGPPPPKDQSSPRG-FREQSGGFRQQSSRGPSGGDNR 586 + + GR +KV N D+ PR +R ++ + SR SG ++R Sbjct: 232 DESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSR 286
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 48.5 bits (114), Expect = 2e-05 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VGN+ + + +L F GSV V ++ DK +G +GF ++ S E V ++ L Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL 231 Query: 440 NGYVLDGRALKV-----NSGPPPPKDQSSPRG-FREQSGGFRQQSSRGPSGGDNR 586 + + GR +KV N D+ PR +R ++ + SR SG ++R Sbjct: 232 DESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSR 286
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 48.5 bits (114), Expect = 2e-05 Identities = 27/78 (34%), Positives = 41/78 (52%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L + L FEQ G + V V+ D T RSRGFGF+T S V++A + Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDA-QN 76 Query: 437 LNGYVLDGRALKVNSGPP 490 + +DGR ++ P Sbjct: 77 ARPHKVDGRVVEPKRAVP 94 Score = 40.0 bits (92), Expect = 0.006 Identities = 29/107 (27%), Positives = 48/107 (44%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG + ++ L F+Q G+V ++ DK T + RGF FV + V++ Sbjct: 109 KLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLS 168 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGG 577 N + + G+ + V P +P G + GG R G GG Sbjct: 169 RN-HQIRGKHIDVKKALP---KGDAPGG---RGGGGRGGVGGGAGGG 208
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 48.5 bits (114), Expect = 2e-05 Identities = 37/106 (34%), Positives = 49/106 (46%), Gaps = 5/106 (4%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 D VFVGNL V L LF QAG + V + D+ G+ + FGFV E V A+ Sbjct: 9 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAI 67 Query: 431 ERLNGYVLDGRALKV-----NSGPPPPKDQSSPRGFREQSGGFRQQ 553 LNG L GR + V +S P +QS + S +R + Sbjct: 68 ALLNGIRLYGRPINVQYRFGSSRSSEPANQSFESCVKINSHNYRNE 113
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 48.5 bits (114), Expect = 2e-05 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VGN+ + + +L F GSV V ++ DK +G +GF ++ S E V ++ L Sbjct: 169 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL 227 Query: 440 NGYVLDGRALKV-----NSGPPPPKDQSSPRG-FREQSGGFRQQSSRGPSGGDNR 586 + + GR +KV N D+ PR +R ++ + SR SG ++R Sbjct: 228 DESLFRGRQIKVIPKRTNRPGISTTDRGFPRSRYRARTTNYNSSRSRFYSGFNSR 282
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 48.1 bits (113), Expect = 2e-05 Identities = 25/72 (34%), Positives = 43/72 (59%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++V N+ +V +L F Q G++ +++ D+ G+S+GFGFV ST EE +AV+ Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKTF 364 Query: 440 NGYVLDGRALKV 475 +G + G+ L V Sbjct: 365 HGQMFHGKPLYV 376 Score = 42.4 bits (98), Expect = 0.001 Identities = 24/72 (33%), Positives = 41/72 (56%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFV NLP SV +A L +F++ G++ +V + G+SRG+GFV + A++ L Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLE-DGKSRGYGFVQFEQEDAAHAAIQTL 172 Query: 440 NGYVLDGRALKV 475 N ++ + + V Sbjct: 173 NSTIVADKEIYV 184 Score = 37.4 bits (85), Expect = 0.037 Identities = 20/72 (27%), Positives = 39/72 (54%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VG+L SV L F + S+ V + D +GRS +G+ + ++ A+E+ Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85 Query: 440 NGYVLDGRALKV 475 N +L+G+ ++V Sbjct: 86 NNSLLNGKMIRV 97
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/74 (36%), Positives = 42/74 (56%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 V V NLP SV+ L +F++ G+V +V D G S G G V+ ++++ A+E+ Sbjct: 238 VIVKNLPASVNWQALKDIFKECGNVAHADVELDG-DGVSTGSGTVSFYDIKDLHRAIEKY 296 Query: 440 NGYVLDGRALKVNS 481 NGY ++G L V S Sbjct: 297 NGYSIEGNVLDVKS 310 Score = 46.2 bits (108), Expect = 8e-05 Identities = 25/86 (29%), Positives = 39/86 (45%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FVGNL + L F Q G V ++I + G RG G V + ++V+ A+ + Sbjct: 138 IFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEFTNSDDVDRAIRQY 195 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPR 517 +G R + V PPP + R Sbjct: 196 DGAFFMDRKIFVRQDNPPPSNNIKER 221 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/73 (34%), Positives = 35/73 (47%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++ NLPFS + L LFE G V E+ YD G G V V++ + +ERL Sbjct: 353 IYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDS-KGAPTGIAVVEYDNVDDADVCIERL 411 Query: 440 NGYVLDGRALKVN 478 N Y G L ++ Sbjct: 412 NNYNYGGCDLDIS 424
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 48.1 bits (113), Expect = 2e-05 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 1/108 (0%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 +VF+G LP +V L F + G V V ++YD+ +SRGFGF++ VE Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTN- 155 Query: 437 LNGYV-LDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGG 577 Y+ L+G+ +++ P R+ SGG Q S+ GG Sbjct: 156 -ERYINLNGKQVEIKKAEP-----------RDGSGG--QNSNNSTVGG 189 Score = 46.6 bits (109), Expect = 6e-05 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 1/126 (0%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG L + L+ F + G + V+ + +GRSRGFGFVT + V ++ Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ- 66 Query: 437 LNG-YVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWN 613 NG + LDGR ++ P P+ P+ GG +V++G L N Sbjct: 67 -NGPHTLDGRT--IDPKPCNPRTLQKPK-----------------KGGGYKVFLGGLPSN 106 Query: 614 VDDSAL 631 V ++ L Sbjct: 107 VTETDL 112
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 47.8 bits (112), Expect = 3e-05 Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 21/123 (17%) Frame = +2 Query: 266 VGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNG 445 VGNL F + L F + V + ++ D LT RSRGFG+V T + + A+ L+G Sbjct: 98 VGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFETADTLSAAL-ALSG 154 Query: 446 YVLDGRALK--------------------VNSGP-PPPKDQSSPRGFREQSGGFRQQSSR 562 L GR ++ V GP PP + SP G R + G + +R Sbjct: 155 EDLMGRPVRITVAEPRRSFAREERSTGDWVRRGPLPPAEPAESPFGKRRTNSGRFRDPAR 214 Query: 563 GPS 571 PS Sbjct: 215 DPS 217
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 47.8 bits (112), Expect = 3e-05 Identities = 30/83 (36%), Positives = 51/83 (61%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFVG + ++ A++ FEQ G+V+ V++I D+ TG S+G+GFV+ +V++ VE Sbjct: 38 VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSFLDNVDVQKIVE-- 94 Query: 440 NGYVLDGRALKVNSGPPPPKDQS 508 + + G+ LK+ GP K Q+ Sbjct: 95 SQISVHGKRLKL--GPAIRKQQN 115
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 47.8 bits (112), Expect = 3e-05 Identities = 25/74 (33%), Positives = 36/74 (48%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 E R+F+ NLPF+ ++ FE G+V+ V + DK T S+G FV+ S A Sbjct: 312 ESGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAA 371 Query: 428 VERLNGYVLDGRAL 469 +G GR L Sbjct: 372 YRAKDGSTFQGRLL 385 Score = 45.8 bits (107), Expect = 1e-04 Identities = 26/71 (36%), Positives = 36/71 (50%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++ + NLPF + LF G ++ V + K +RGFGFV STV E + A+E Sbjct: 720 KILIKNLPFEATKRDIRDLFSSQGQLKSVR-LPKKFDNTTRGFGFVEYSTVREAQSAMEA 778 Query: 437 LNGYVLDGRAL 469 L L GR L Sbjct: 779 LKHTHLLGRHL 789 Score = 30.0 bits (66), Expect = 6.0 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 5/77 (6%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGR-----SRGFGFVTMSTVEEVEE 424 ++V NL FS +L F + R S G+GFV +++ Sbjct: 623 LYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAART 682 Query: 425 AVERLNGYVLDGRALKV 475 A + ++G VLD L V Sbjct: 683 AQKAMDGKVLDAHTLVV 699
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 47.8 bits (112), Expect = 3e-05 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 19/102 (18%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE-- 433 VFVG + +D ++ G F + GSV+ V++I D+ TG S+G+GFV+ +V++ VE Sbjct: 42 VFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVESQ 100 Query: 434 -----------------RLNGYVLDGRALKVNSGPPPPKDQS 508 L Y + R L N PPPP+ Q+ Sbjct: 101 INFHGKKLKLGPAIRKQNLCAYHVQPRPLVFNH-PPPPQFQN 141
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 47.4 bits (111), Expect = 4e-05 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Frame = +2 Query: 248 EDLR-VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 E+LR +FVG L + + + Q G + + V+ D T RSRGFGFVT S EV+ Sbjct: 20 ENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDA 79 Query: 425 AVERLNGYVLDGRALKVNSGPP 490 A+++ +++DG+ + P Sbjct: 80 AMKQ-RPHIIDGKTVDPKRAVP 100 Score = 44.3 bits (103), Expect = 3e-04 Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 3/110 (2%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R++V + L F + G+V E+I DK T + RGFGFVT + V++ V + Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ 174 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGF---REQSGGFRQQSSRGPSGG 577 ++++G V G KD+ S RE GG + RG G Sbjct: 175 -KSHMVNGHRCDVRKG--LSKDEMSKAQMNRDRETRGGRSRDGQRGGYNG 221
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 47.4 bits (111), Expect = 4e-05 Identities = 31/107 (28%), Positives = 50/107 (46%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++ V NL F V A + LF + G+++ V YD+ +GRS G V + +A+++ Sbjct: 106 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 164 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGG 577 NG LDGR + + Q P + G R + + G GG Sbjct: 165 YNGVPLDGRPMNIQLVTSQIDAQRRPAQSVNRGGMTRNRGAGGFGGG 211
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 47.4 bits (111), Expect = 4e-05 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+G LP + +L L E+ G + + ++ D G +RG+ FVT S +E + A+++L Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKQEAKNAIKQL 116 Query: 440 NGY-VLDGRALKV 475 N Y + +GR L V Sbjct: 117 NNYEIRNGRLLGV 129 Score = 39.7 bits (91), Expect = 0.008 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFE--QAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 ++V NL S + F + G+VE V+ I D + FV S E+ EA++ Sbjct: 233 LYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD--------YAFVHFSNREDAVEAMK 284 Query: 434 RLNGYVLDGRALKVNSGPPPPKD 502 LNG VLDG ++V P KD Sbjct: 285 ALNGKVLDGSPIEVTLAKPVDKD 307
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 47.4 bits (111), Expect = 4e-05 Identities = 26/80 (32%), Positives = 40/80 (50%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++V LP +L+ F Q G ++ V + +K TG SR +GF+ E+ A E + Sbjct: 93 IYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESM 152 Query: 440 NGYVLDGRALKVNSGPPPPK 499 N Y+L G L+V P K Sbjct: 153 NNYLLMGHLLQVRVLPKGAK 172
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 47.4 bits (111), Expect = 4e-05 Identities = 27/76 (35%), Positives = 43/76 (56%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEA 427 + + +FV NL SVD +L F G++ +V+ + G+S+GFGFV ST EE +A Sbjct: 319 QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKA 377 Query: 428 VERLNGYVLDGRALKV 475 + N ++ G+ L V Sbjct: 378 ITEKNQQIVAGKPLYV 393 Score = 47.0 bits (110), Expect = 5e-05 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VG+L SV A L +F GSV + V D +T S G+ +V + E +A+E+L Sbjct: 39 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 98 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPS---GGDNRVYVGNLSW 610 N + GR ++ S R PS G +++ NL Sbjct: 99 NYTPIKGRLCRI------------------------MWSQRDPSLRKKGSGNIFIKNLHP 134 Query: 611 NVDDSAL 631 ++D+ AL Sbjct: 135 DIDNKAL 141 Score = 43.9 bits (102), Expect = 4e-04 Identities = 23/72 (31%), Positives = 40/72 (55%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+ NL +D+ L F G + ++ D+ G+S+GFGFV +EA++ L Sbjct: 127 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDAL 185 Query: 440 NGYVLDGRALKV 475 NG +L+G+ + V Sbjct: 186 NGMLLNGQEIYV 197 Score = 39.7 bits (91), Expect = 0.008 Identities = 34/124 (27%), Positives = 53/124 (42%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++V N+ Q LF + G + + D G+ +GFGFV E+ +AVE L Sbjct: 220 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEAL 278 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 N L+G L V K ++Q +R + G + ++V NL +VD Sbjct: 279 NDSELNGEKLYVGRA---QKKNERMHVLKKQYEAYRLEKMAKYQGVN--LFVKNLDDSVD 333 Query: 620 DSAL 631 D L Sbjct: 334 DEKL 337
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 47.4 bits (111), Expect = 4e-05 Identities = 24/77 (31%), Positives = 39/77 (50%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 V+V +LP +D Q+ F Q G+V + K TG S+G+ FV + + + E + Sbjct: 47 VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETM 106 Query: 440 NGYVLDGRALKVNSGPP 490 N Y+ R L+ + PP Sbjct: 107 NNYLFGERLLECHFMPP 123
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 47.0 bits (110), Expect = 5e-05 Identities = 22/73 (30%), Positives = 43/73 (58%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FVGN+ V Q+ F+ G ++ + ++YD+ TG +G+G++ + E+A++ L Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQ-L 124 Query: 440 NGYVLDGRALKVN 478 NG L G+ + V+ Sbjct: 125 NGGELKGKKIAVS 137
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 47.0 bits (110), Expect = 5e-05 Identities = 29/109 (26%), Positives = 52/109 (47%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +++G++P ++ QL F Q G+V + + K TG S+G+ +V E + + + Sbjct: 43 IYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADTM 102 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNR 586 N Y+ R LK PP ++ PR F + FR+ + S + R Sbjct: 103 NNYLFCERLLKCEFVPP---EKVHPRLFIGCTAKFRKPTKPAVSRYNKR 148
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 47.0 bits (110), Expect = 5e-05 Identities = 22/73 (30%), Positives = 36/73 (49%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R+F+ N+ + LF Q G++E V + D TG+S+GF +V E+ A Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370 Query: 437 LNGYVLDGRALKV 475 L+ + GR L + Sbjct: 371 LDKQIFQGRLLHI 383 Score = 42.7 bits (99), Expect = 9e-04 Identities = 26/82 (31%), Positives = 40/82 (48%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++ + NLPF L LF G ++ V V K +RGF FV + ++E E A+ + Sbjct: 718 KIIIKNLPFEATRKDLLELFGAFGQLKSVRVP-KKFDQSARGFAFVEFNLMKEAETAMSQ 776 Query: 437 LNGYVLDGRALKVNSGPPPPKD 502 L G L GR L + P++ Sbjct: 777 LEGVHLLGRRLVMQYAEQDPEN 798 Score = 40.8 bits (94), Expect = 0.003 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 5/77 (6%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGS--VEMVEVIYD-KLTGR--SRGFGFVTMSTVEEVEE 424 VFV NL F+ L+ LF+ V V+ D K +G+ S GFGFV T E+ Sbjct: 619 VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANV 678 Query: 425 AVERLNGYVLDGRALKV 475 A+ L+G+VLDG L++ Sbjct: 679 AISTLDGHVLDGHKLQL 695
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 47.0 bits (110), Expect = 5e-05 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 8/118 (6%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++ V NL F V A + LF + G+++ V YD+ +GRS G V + +A+++ Sbjct: 76 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQ 134 Query: 437 LNGYVLDGRALKV-----NSGPPPPKDQSSPRGFREQ---SGGFRQQSSRGPSGGDNR 586 G LDGR + + P QS RG + SGGF + S+G G R Sbjct: 135 YKGVPLDGRPMDIQLVASQIDPQRRPAQSGNRGGMTRSRGSGGFGGRGSQGRGRGTGR 192
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 46.6 bits (109), Expect = 6e-05 Identities = 27/89 (30%), Positives = 44/89 (49%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S ++V L S +A L LF + G V +V+ + + +R +GFVTMST +E + Sbjct: 448 SSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATK 507 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSS 511 + L+ L GR + V P ++ S Sbjct: 508 CISHLHRTELHGRMISVEKAKNEPSEKKS 536
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/76 (31%), Positives = 41/76 (53%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R+ V N+ F++ + +FE G +E V + D RS+GFG++ A+E+ Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDD-QNRSKGFGYIQYRNPISARNALEK 399 Query: 437 LNGYVLDGRALKVNSG 484 +NG+ L GR ++V G Sbjct: 400 MNGFDLAGRNMRVCLG 415 Score = 45.8 bits (107), Expect = 1e-04 Identities = 37/121 (30%), Positives = 59/121 (48%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 VFV L + S +L FEQAG V +++ DK++GRS+G +V + V+ A+ L Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI-AL 300 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 +G L G + V + R RE + R S+ P +R+ V N+ +N+ Sbjct: 301 SGKRLLGLPVIVQL-----TEAEKNRKAREAAELARAASAEIPF---HRLCVSNIHFNLT 352 Query: 620 D 622 D Sbjct: 353 D 353
>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 46.6 bits (109), Expect = 6e-05 Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 4/124 (3%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRG--FGFVTMSTVEEV 418 + D R++VGNLP + + + +F + G++ ++ L R G F FV + Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDID-----LKNRRGGPPFAFVEFEDPRDA 66 Query: 419 EEAVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSG--GDNRVY 592 E+AV +GY DG L+V P + + RG GG + GP +NRV Sbjct: 67 EDAVYGRDGYDYDGYRLRVEF---PRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVV 123 Query: 593 VGNL 604 V L Sbjct: 124 VSGL 127
>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 46.6 bits (109), Expect = 6e-05 Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 4/124 (3%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRG--FGFVTMSTVEEV 418 + D R++VGNLP + + + +F + G++ ++ L R G F FV + Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDID-----LKNRRGGPPFAFVEFEDPRDA 66 Query: 419 EEAVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSG--GDNRVY 592 E+AV +GY DG L+V P + + RG GG + GP +NRV Sbjct: 67 EDAVYGRDGYDYDGYRLRVEF---PRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVV 123 Query: 593 VGNL 604 V L Sbjct: 124 VSGL 127
>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing| factor SF2, P33 subunit) (Alternative splicing factor ASF-1) Length = 247 Score = 46.6 bits (109), Expect = 6e-05 Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 4/124 (3%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRG--FGFVTMSTVEEV 418 + D R++VGNLP + + + +F + G++ ++ L R G F FV + Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDID-----LKNRRGGPPFAFVEFEDPRDA 66 Query: 419 EEAVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSG--GDNRVY 592 E+AV +GY DG L+V P + + RG GG + GP +NRV Sbjct: 67 EDAVYGRDGYDYDGYRLRVEF---PRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVV 123 Query: 593 VGNL 604 V L Sbjct: 124 VSGL 127
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 46.6 bits (109), Expect = 6e-05 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+G LP + +L L E+ G + + ++ D G +RG+ FVT S +E + A+++L Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMD-FNGNNRGYAFVTFSNKQEAKNAIKQL 116 Query: 440 NGY-VLDGRALKV 475 N Y + GR L V Sbjct: 117 NNYEIRTGRLLGV 129 Score = 39.7 bits (91), Expect = 0.008 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFE--QAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 ++V NL S + F + G+VE V+ I D + FV S E+ EA++ Sbjct: 233 LYVRNLMLSTSEEMIEKEFNSIKPGAVERVKKIRD--------YAFVHFSNREDAVEAMK 284 Query: 434 RLNGYVLDGRALKVNSGPPPPKD 502 LNG VLDG ++V P KD Sbjct: 285 ALNGKVLDGSPIEVTLAKPVDKD 307
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 46.6 bits (109), Expect = 6e-05 Identities = 26/86 (30%), Positives = 40/86 (46%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VG L VD L F G + +++ D T + RGF FV E+ A++ + Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPR 517 N L GR ++VN P + S R Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSR 93
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 46.6 bits (109), Expect = 6e-05 Identities = 26/86 (30%), Positives = 40/86 (46%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VG L VD L F G + +++ D T + RGF FV E+ A++ + Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPR 517 N L GR ++VN P + S R Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSR 93
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 46.6 bits (109), Expect = 6e-05 Identities = 34/124 (27%), Positives = 56/124 (45%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV NLP+ V ++ +FE A V +V G S+G ++ T E E+A+E Sbjct: 373 LFVKNLPYRVTEDEMKNVFENALEVRLVL----NKEGSSKGMAYIEFKTEAEAEKALEEK 428 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 G +DGRA+ ++ + +S Q GG ++S + V NLS+ Sbjct: 429 QGTEVDGRAMVIDYTGEKSQQES-------QKGGGERES--------KTLIVNNLSYAAS 473 Query: 620 DSAL 631 + L Sbjct: 474 EETL 477 Score = 44.7 bits (104), Expect = 2e-04 Identities = 34/106 (32%), Positives = 50/106 (47%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FV L L FE GS+ ++ D+ TG S+GFGFV S+ E+ + A E + Sbjct: 555 LFVRGLSEDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGG 577 +DG + ++ P + Q GF GGF + RG GG Sbjct: 612 EDGEIDGNKVTLDFAKPKGEFQRG-GGF---GGGFGGRGGRGGRGG 653
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 46.2 bits (108), Expect = 8e-05 Identities = 22/73 (30%), Positives = 37/73 (50%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R+FV NL + ++L +F G +E + V +D S+GF +V + + EA Sbjct: 296 RLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRN 355 Query: 437 LNGYVLDGRALKV 475 L+G + GR L + Sbjct: 356 LDGKIFQGRLLHI 368 Score = 38.5 bits (88), Expect = 0.017 Identities = 23/71 (32%), Positives = 32/71 (45%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++ + NLPF + LF G + V V K +RGFGF + E E A++ Sbjct: 698 KIIIKNLPFQATKKDVRSLFGAYGQLRSVRVP-KKFDRSARGFGFADFVSAREAENAMDA 756 Query: 437 LNGYVLDGRAL 469 L L GR L Sbjct: 757 LKNTHLLGRRL 767 Score = 31.6 bits (70), Expect = 2.0 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 5/79 (6%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYD---KLTGR--SRGFGFVTMSTVEEVEE 424 +F+ NL FS + L F + K G+ S GFGF T + + Sbjct: 594 LFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQAQA 653 Query: 425 AVERLNGYVLDGRALKVNS 481 A+ +NGY LD L V + Sbjct: 654 ALAVMNGYTLDRHTLVVRA 672
>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2| Length = 218 Score = 46.2 bits (108), Expect = 8e-05 Identities = 32/106 (30%), Positives = 49/106 (46%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VGNL F QL LF + GS+E + + D+ GF F+ T +E A++ L Sbjct: 48 IYVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFIIYQTPQEALAALKYL 107 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGG 577 + LD R + ++ P GF E +Q RG +GG Sbjct: 108 SKTKLDDREITIDLDP----------GFEE-----GRQFGRGKNGG 138
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 45.8 bits (107), Expect = 1e-04 Identities = 30/75 (40%), Positives = 38/75 (50%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 D +FVGNL V L LF QAG V V++ DK G+ + F FV V A+ Sbjct: 9 DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVPYAM 67 Query: 431 ERLNGYVLDGRALKV 475 LNG L GR +K+ Sbjct: 68 NLLNGIKLFGRPIKI 82
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/72 (30%), Positives = 42/72 (58%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+G+L +V L G+F++ S +V D +T +S G G++ EE E+A+E L Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152 Query: 440 NGYVLDGRALKV 475 N ++G+ +++ Sbjct: 153 NYTKVNGKEIRI 164
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+G LP + +L L E+ G + + ++ D G +RG+ FVT S E + A+++L Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQL 116 Query: 440 NGY-VLDGRALKV 475 N Y + +GR L V Sbjct: 117 NNYEIRNGRLLGV 129 Score = 39.7 bits (91), Expect = 0.008 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFE--QAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 ++V NL S + F + G+VE V+ I D + FV S E+ EA++ Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD--------YAFVHFSNREDAVEAMK 284 Query: 434 RLNGYVLDGRALKVNSGPPPPKD 502 LNG VLDG ++V P KD Sbjct: 285 ALNGKVLDGSPIEVTLAKPVDKD 307
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 45.8 bits (107), Expect = 1e-04 Identities = 41/122 (33%), Positives = 55/122 (45%), Gaps = 17/122 (13%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 RV+VGNL V L G F + G + V + ++ GF FV ++ E+A + Sbjct: 8 RVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNP-----PGFAFVEFEHRDDAEKACDI 62 Query: 437 LNGYVLDGRALKV--NSGPP------PPKDQSSPRG-FREQS--------GGFRQQSSRG 565 LNG L G L+V + G P P D+ RG F S GGFRQ+ S G Sbjct: 63 LNGSELLGSQLRVEISKGRPRQGRRGGPMDRGGRRGDFGRHSITSGGSGGGGFRQRGSSG 122 Query: 566 PS 571 S Sbjct: 123 SS 124
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 45.8 bits (107), Expect = 1e-04 Identities = 30/75 (40%), Positives = 38/75 (50%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 D +FVGNL V L LF QAG V V++ DK G+ + F FV V A+ Sbjct: 9 DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVPYAM 67 Query: 431 ERLNGYVLDGRALKV 475 LNG L GR +K+ Sbjct: 68 NLLNGIKLYGRPIKI 82
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 45.8 bits (107), Expect = 1e-04 Identities = 32/109 (29%), Positives = 52/109 (47%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VGNL F Q+ LF ++G ++ + + DK+ + GF FV + + E A+ + Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNR 586 NG LD R ++ + GF+E +Q RG SGG R Sbjct: 102 NGTRLDDRIIRTD----------WDAGFKE-----GRQYGRGRSGGQVR 135
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 45.8 bits (107), Expect = 1e-04 Identities = 32/109 (29%), Positives = 52/109 (47%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VGNL F Q+ LF ++G ++ + + DK+ + GF FV + + E A+ + Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNR 586 NG LD R ++ + GF+E +Q RG SGG R Sbjct: 102 NGTRLDDRIIRTD----------WDAGFKE-----GRQYGRGRSGGQVR 135
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 45.8 bits (107), Expect = 1e-04 Identities = 32/109 (29%), Positives = 52/109 (47%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VGNL F Q+ LF ++G ++ + + DK+ + GF FV + + E A+ + Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNR 586 NG LD R ++ + GF+E +Q RG SGG R Sbjct: 102 NGTRLDDRIIRTD----------WDAGFKE-----GRQYGRGRSGGQVR 135
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 45.8 bits (107), Expect = 1e-04 Identities = 21/73 (28%), Positives = 38/73 (52%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R+FV NLP+ + L +F + G +E + V +D + S+GF +V + +A + Sbjct: 302 RLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYKE 361 Query: 437 LNGYVLDGRALKV 475 L+G GR + + Sbjct: 362 LDGKHFQGRLMHI 374 Score = 38.5 bits (88), Expect = 0.017 Identities = 23/71 (32%), Positives = 32/71 (45%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++ + NLPF + LF G + V V K +RGFGF + E E A++ Sbjct: 703 KIIIKNLPFQATKKDVRSLFGAYGQLRSVRVP-KKFDRSARGFGFADFVSAREAENAMDA 761 Query: 437 LNGYVLDGRAL 469 L L GR L Sbjct: 762 LKNTHLLGRRL 772 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYD---KLTGR--SRGFGFVTMSTVEEVEE 424 +FV NL FS + + +F+ + K G+ S GFGFV T + + Sbjct: 599 LFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQAQA 658 Query: 425 AVERLNGYVLDGRALKVNS 481 A+ ++GY LD L V + Sbjct: 659 ALAAMDGYKLDQHELVVRA 677
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/69 (31%), Positives = 41/69 (59%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 S +++FVG++P + ++ FEQ G+V V +I DK TG+ +G FV +T ++ + Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176 Query: 425 AVERLNGYV 451 A+ L+ + Sbjct: 177 AIRALHNQI 185 Score = 43.5 bits (101), Expect = 5e-04 Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 13/123 (10%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 + ++FVG+L ++ +F Q G VE V ++ D+ +SRG GFV S+ E A+ Sbjct: 210 EFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAI 268 Query: 431 ERLNG-YVLDG--RALKVN-SGPPPPKDQSSPR---------GFREQSGGFRQQSSRGPS 571 + LNG Y + G + L V + P PK S G R Q+ G R S+ G S Sbjct: 269 DGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRFQASGPRPTSNFGDS 328 Query: 572 GGD 580 GD Sbjct: 329 SGD 331
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGR---SRGFGFVTMSTVEEVEEAV 430 +F+ NL FS L G+F + G+++ + K S GFGFV E+ ++A+ Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 783 Query: 431 ERLNGYVLDGRALKV 475 ++L G+ +DG L+V Sbjct: 784 KQLQGHTVDGHKLEV 798 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/73 (34%), Positives = 35/73 (47%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R+FV NL ++ L LF G + + D LT + +GF FVT E +A Sbjct: 401 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 460 Query: 437 LNGYVLDGRALKV 475 ++G V GR L V Sbjct: 461 VDGQVFQGRMLHV 473 Score = 36.2 bits (82), Expect = 0.083 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKL-TGRSRGFGFVTMSTVEEVEEAVE 433 ++ V N+PF + ++ LF G ++ V + TG RGFGFV T ++ ++A Sbjct: 825 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFN 884 Query: 434 RL 439 L Sbjct: 885 AL 886
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 45.4 bits (106), Expect = 1e-04 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 19/102 (18%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE-- 433 VFVG + +D ++ F + GSV+ V++I D+ TG S+G+GFV+ +V++ VE Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVESQ 100 Query: 434 -----------------RLNGYVLDGRALKVNSGPPPPKDQS 508 L Y + R L N PPPP+ Q+ Sbjct: 101 INFHGKKLKLGPAIRKQNLCAYHVQPRPLVFNH-PPPPQFQN 141
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 45.4 bits (106), Expect = 1e-04 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 19/102 (18%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE-- 433 VFVG + +D ++ F + GSV+ V++I D+ TG S+G+GFV+ +V++ VE Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVESQ 100 Query: 434 -----------------RLNGYVLDGRALKVNSGPPPPKDQS 508 L Y + R L N PPPP+ Q+ Sbjct: 101 INFHGKKLKLGPAIRKQNLCAYHVQPRPLVFNH-PPPPQFQN 141
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 45.4 bits (106), Expect = 1e-04 Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 3/108 (2%) Frame = +2 Query: 263 FVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLN 442 +VGNLPF+ + +F+ S+ V ++ DK T + +GF +V V+ ++EA+ + Sbjct: 44 YVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD 101 Query: 443 GYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQ---SSRGPSGG 577 G +L R+L+V+ +D+ GF + GG + SSR GG Sbjct: 102 GALLGDRSLRVDIAEGRKQDKG---GFGFRKGGPDDRGMGSSRESRGG 146
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 45.4 bits (106), Expect = 1e-04 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 7/125 (5%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG L + ++ F Q G++ VE+ +DK + +GF F+T + E+V + + Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDS-EQVVTDLLK 195 Query: 437 LNGYVLDGRALKVNSGPPPPKDQ------SSPR-GFREQSGGFRQQSSRGPSGGDNRVYV 595 + G+ + V P P++Q PR G R GG+ G GG N + Sbjct: 196 TPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGY------GGRGGYNNQWD 249 Query: 596 GNLSW 610 G S+ Sbjct: 250 GQGSY 254 Score = 45.4 bits (106), Expect = 1e-04 Identities = 20/59 (33%), Positives = 33/59 (55%) Frame = +2 Query: 248 EDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 +D ++FVG L + +L F + G +E + V D TGRSRGF F+ + E +++ Sbjct: 54 DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDK 112
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 45.4 bits (106), Expect = 1e-04 Identities = 30/75 (40%), Positives = 38/75 (50%) Frame = +2 Query: 251 DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 D +FVGNL V L LF QAG V V++ DK G+ + F FV V A+ Sbjct: 9 DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKLKQFAFVNFKHEVSVPYAM 67 Query: 431 ERLNGYVLDGRALKV 475 LNG L GR +K+ Sbjct: 68 NLLNGIKLFGRPIKI 82
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +F+G LP + +L L E+ G + + ++ D G +RG+ FVT S E + A+++L Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAKNAIKQL 116 Query: 440 NGY-VLDGRALKV 475 N Y + +GR L V Sbjct: 117 NNYEIRNGRLLGV 129 Score = 39.7 bits (91), Expect = 0.008 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFE--QAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 ++V NL S + F + G+VE V+ I D + FV S E+ EA++ Sbjct: 233 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD--------YAFVHFSNREDAVEAMK 284 Query: 434 RLNGYVLDGRALKVNSGPPPPKD 502 LNG VLDG ++V P KD Sbjct: 285 ALNGKVLDGSPIEVTLAKPVDKD 307
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 45.4 bits (106), Expect = 1e-04 Identities = 34/125 (27%), Positives = 55/125 (44%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L L + Q G V V V+ D T RSRGFGF+T + V+ A E Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNV 616 +++DG+ ++ P P ++ SR + +++VG L N Sbjct: 93 -RPHIIDGKTVEAKRALPRP-----------------ERESRETNISVKKLFVGGLKDNH 134 Query: 617 DDSAL 631 D+ L Sbjct: 135 DEECL 139 Score = 43.1 bits (100), Expect = 7e-04 Identities = 22/58 (37%), Positives = 34/58 (58%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 ++FVG L + D L F Q G+V V+++ DK TG+ RGF FV + V++A+ Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 45.4 bits (106), Expect = 1e-04 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 19/102 (18%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE-- 433 VFVG + +D ++ F + GSV+ V++I D+ TG S+G+GFV+ +V++ VE Sbjct: 42 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQ 100 Query: 434 -----------------RLNGYVLDGRALKVNSGPPPPKDQS 508 L Y + R L N PPPP+ QS Sbjct: 101 INFHGKKLKLGPAIRKQNLCTYHVQPRPLIFNP-PPPPQFQS 141
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/79 (27%), Positives = 42/79 (53%) Frame = +2 Query: 242 FSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVE 421 + ++ +++GNL + + +F + G V + D+ TG S+GF ++ Sbjct: 27 YKDNAYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTI 86 Query: 422 EAVERLNGYVLDGRALKVN 478 AV+ LNG+ + GRALK++ Sbjct: 87 LAVDNLNGFKIGGRALKID 105
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 45.1 bits (105), Expect = 2e-04 Identities = 36/129 (27%), Positives = 55/129 (42%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEE 424 ++D +++GNL V + L L QAG V + + D++ GFGF ++VE Sbjct: 8 NQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEY 67 Query: 425 AVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNL 604 A + LN L G+ ++VN S RG G ++VGNL Sbjct: 68 ACQILNQVKLFGKPIRVNRA-------SQDRGVNTLIGA--------------NLFVGNL 106 Query: 605 SWNVDDSAL 631 VD+ L Sbjct: 107 DPLVDERVL 115 Score = 42.7 bits (99), Expect = 9e-04 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +FVGNL VD L F G + + GRS+G+GFV+ + E + A+E + Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160 Query: 440 NGYVLDGRALKVN 478 N L + + V+ Sbjct: 161 NNQFLMNKPITVS 173
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/88 (30%), Positives = 44/88 (50%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++F+G L + L FE+ G++ V V+ D T RSRGFGF+T S ++ A + Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNA-QN 83 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRG 520 + +DGR ++ P + S G Sbjct: 84 ARPHKIDGRTVEPKRAVPRQEIDSPNAG 111 Score = 42.0 bits (97), Expect = 0.002 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 3/110 (2%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG L D L F+ G + V ++ DK TG+ RGF F+ + V++ + + Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ 175 Query: 437 LNGYVLDGRALKVNSG-PPPPKDQSSPRGFR--EQSGGFRQQSSRGPSGG 577 + + + L V D+ G R ++GG Q RG GG Sbjct: 176 -KTHSIKNKTLDVKKAIAKQDMDRQGGGGGRGGPRAGGRGGQGDRGQGGG 224
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE- 433 ++FVG L + L F + G V + D TGRSRGFGF+ VE+ ++ Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 128 Query: 434 ---RLNGYVLDGRALKVNSGPPPPK 499 RL+G V+D + P K Sbjct: 129 KEHRLDGRVIDPKKAMAMKKDPVKK 153 Score = 43.1 bits (100), Expect = 7e-04 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 1/108 (0%) Frame = +2 Query: 257 RVFVGNL-PFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE 433 ++FVG L P S ++ F + G +E +E+ D + RGF F+T E V++ +E Sbjct: 153 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 212 Query: 434 RLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGG 577 + + + G ++ PK+ + + G R + +RG GG Sbjct: 213 K-KFHTVSGSKCEIKVA--QPKEVYQQQQYGSGGRGNRNRGNRGSGGG 257
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 45.1 bits (105), Expect = 2e-04 Identities = 15/45 (33%), Positives = 30/45 (66%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFV 394 +F+G LP+ +D +L F + G +E + ++ DK+T +S+G+ F+ Sbjct: 109 IFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFI 153
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 45.1 bits (105), Expect = 2e-04 Identities = 32/124 (25%), Positives = 51/124 (41%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 + V LP + +L LF G + ++ D TG S G+GFV + + A+ L Sbjct: 80 LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNL 139 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVGNLSWNVD 619 NG + + +KV+ P GG + + D +YV NLS ++ Sbjct: 140 NGITVRNKRIKVSFARP---------------GGEQLR--------DTNLYVTNLSRSIT 176 Query: 620 DSAL 631 D L Sbjct: 177 DEQL 180
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 44.7 bits (104), Expect = 2e-04 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVE- 433 ++FVG L + L F + G V + D TGRSRGFGF+ VE+ ++ Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135 Query: 434 ---RLNGYVLDGRALKVNSGPPPPK 499 RL+G V+D + P K Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDPVKK 160 Score = 43.9 bits (102), Expect = 4e-04 Identities = 27/114 (23%), Positives = 50/114 (43%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++FVG L ++ F Q G +E +E+ D + RGF F+T + V++ +E+ Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNRVYVG 598 + + G ++ PK+ + + G R + +RG GG G Sbjct: 220 -KFHTVSGSKCEIKVA--QPKEVYQQQQYGSGGRGNRNRGNRGSGGGQGSTNYG 270
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/93 (30%), Positives = 51/93 (54%) Frame = +2 Query: 263 FVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLN 442 +VGNLPF+ + +F+ S+ V ++ DK T + +GF +V V+ ++EA+ + Sbjct: 44 YVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD 101 Query: 443 GYVLDGRALKVNSGPPPPKDQSSPRGFREQSGG 541 G +L R+L+V+ +D+ GF + GG Sbjct: 102 GALLGDRSLRVDIAEGRKQDKG---GFGFRKGG 131
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 44.3 bits (103), Expect = 3e-04 Identities = 33/109 (30%), Positives = 51/109 (46%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 ++VGNL F Q+ LF ++G V+ + + DK+ + GF FV T + A+ + Sbjct: 34 LYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRADAGTAMRFI 93 Query: 440 NGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSGGDNR 586 NG LD R ++ + GF+E +Q RG SGG R Sbjct: 94 NGTRLDDRIVRTD----------WDAGFKE-----GRQYGRGKSGGQVR 127
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/70 (34%), Positives = 37/70 (52%) Frame = +2 Query: 266 VGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERLNG 445 V NLP ++ +L LF + G V + + DK+TG +GF FVT + ++ A+ LN Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239 Query: 446 YVLDGRALKV 475 + LKV Sbjct: 240 IRMYHMVLKV 249
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12| Length = 396 Score = 43.9 bits (102), Expect = 4e-04 Identities = 21/57 (36%), Positives = 31/57 (54%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAV 430 VFVGNL F D L F GS+E V ++ D T +GF +V + ++ V +A+ Sbjct: 230 VFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKAL 286
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 43.9 bits (102), Expect = 4e-04 Identities = 21/62 (33%), Positives = 33/62 (53%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +++ NLP S+D +L + + G V V+ D +G SRG GF M + E+ E + Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRVLRDS-SGASRGVGFARMESTEKCEAVIGHF 201 Query: 440 NG 445 NG Sbjct: 202 NG 203
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 43.9 bits (102), Expect = 4e-04 Identities = 28/86 (32%), Positives = 42/86 (48%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R+FVG + A L +F G+V+ ++I D+ G S+G+GFVT T +E + Sbjct: 34 RIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEAQRLQAD 92 Query: 437 LNGYVLDGRALKVNSGPPPPKDQSSP 514 VL R L + P K Q +P Sbjct: 93 GECVVLRDRKLNI---APAIKKQPNP 115
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 43.9 bits (102), Expect = 4e-04 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 26/131 (19%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGR-SRGFGFVTMSTVEEVEEAVE 433 +V +G L +V + +F G ++M+++ D+ S+G+ +V EE E+A++ Sbjct: 139 KVHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALK 198 Query: 434 RLNGYVLDGRALKVNSG--------------------PPPPKDQSSPRGFREQSGGFRQQ 553 ++G +DG+ + ++ PPPP + SP R +S R++ Sbjct: 199 HMDGGQIDGQEITASAVLTPWPMRPMPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRR 258 Query: 554 S-----SRGPS 571 S SR P+ Sbjct: 259 SPVRRRSRSPA 269
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 43.5 bits (101), Expect = 5e-04 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 R+F+ N+ +S LF G ++ V V D TG S+GF +V + EE +A Sbjct: 326 RLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIE 385 Query: 437 LNGYVLDGRALKV 475 L+ + GR L + Sbjct: 386 LDKQIFQGRLLHI 398 Score = 40.4 bits (93), Expect = 0.004 Identities = 25/71 (35%), Positives = 35/71 (49%) Frame = +2 Query: 257 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 436 ++ V NLPF + LF G ++ V V K +RGF FV +E E A+++ Sbjct: 739 KIIVKNLPFEATRKDVFELFNSFGQLKSVRVP-KKFDKSARGFAFVEFVLPKEAENAMDQ 797 Query: 437 LNGYVLDGRAL 469 L G L GR L Sbjct: 798 LQGVHLLGRRL 808 Score = 35.8 bits (81), Expect = 0.11 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIY-----DKLTGRSRGFGFVTMSTVEEVEE 424 +F+ NL F S QL F+ + +V K S GFGFV T E+ Sbjct: 642 IFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTKEQATA 701 Query: 425 AVERLNGYVLDGRALKV 475 + ++G V+DG +++ Sbjct: 702 VISAMDGTVIDGHKIQL 718
>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1| Length = 256 Score = 43.5 bits (101), Expect = 5e-04 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 4/124 (3%) Frame = +2 Query: 245 SEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRG--FGFVTMSTVEEV 418 + D R++VGNLP + + + +F + G++ ++ L R G F FV + Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDID-----LKNRRGGPPFAFVEFEDPRDA 66 Query: 419 EEAVERLNGYVLDGRALKVNSGPPPPKDQSSPRGFREQSGGFRQQSSRGPSG--GDNRVY 592 E+AV +GY DG L+V P + + RG GG + GP + RV Sbjct: 67 EDAVYGRDGYDYDGYRLRVEF---PRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVI 123 Query: 593 VGNL 604 V L Sbjct: 124 VSGL 127
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 43.5 bits (101), Expect = 5e-04 Identities = 20/62 (32%), Positives = 33/62 (53%) Frame = +2 Query: 260 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVERL 439 +++ NLP S+D +L + + G V ++ D +G SRG GF M + E+ E + Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHF 201 Query: 440 NG 445 NG Sbjct: 202 NG 203 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,610,480 Number of Sequences: 219361 Number of extensions: 1319953 Number of successful extensions: 6796 Number of sequences better than 10.0: 414 Number of HSP's better than 10.0 without gapping: 5241 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6646 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
