ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal35l17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC117547.19| Mus musculus chromosome 1, clone RP23-221M20, co... 42 2.4
2gb|DQ191684.1| Squilla empusa mitochondrion, complete genome 42 2.4
3emb|CR626941.10| Zebrafish DNA sequence from clone DKEY-12J5 in ... 42 2.4
4gb|AC164373.4| Mus musculus chromosome 1, clone RP23-36O22, comp... 42 2.4
5gb|AC146526.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.7
6gb|AC146946.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.7
7gb|AC108500.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.7
8ref|XM_616959.2| PREDICTED: Bos taurus similar to roundabout 1 i... 40 9.7
9gb|AC140332.3| Mus musculus BAC clone RP23-408K9 from chromosome... 40 9.7
10gb|AC126454.3| Mus musculus BAC clone RP23-256L12 from 19, compl... 40 9.7
11emb|AL133548.6| Human DNA sequence from clone RP11-235O14 on chr... 40 9.7
12dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.7
13dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.7
14dbj|AK105760.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.7
15dbj|AK099541.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.7
16gb|AC003694.1|AC003694 Mus musculus chromosome 19, clone CIT282B... 40 9.7
17gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.7

>gb|AC117547.19| Mus musculus chromosome 1, clone RP23-221M20, complete sequence
          Length = 195598

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 72   ccacaccagccaagaaaccagtgga 96
            |||||||||||||||| ||||||||
Sbjct: 2553 ccacaccagccaagaagccagtgga 2577



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>gb|DQ191684.1| Squilla empusa mitochondrion, complete genome
          Length = 15828

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 630   ttcttgtatgaattgtcattt 650
             |||||||||||||||||||||
Sbjct: 15534 ttcttgtatgaattgtcattt 15514



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>emb|CR626941.10| Zebrafish DNA sequence from clone DKEY-12J5 in linkage group 16,
            complete sequence
          Length = 238554

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 637  atgaattgtcatttgtaaact 657
            |||||||||||||||||||||
Sbjct: 3099 atgaattgtcatttgtaaact 3119



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>gb|AC164373.4| Mus musculus chromosome 1, clone RP23-36O22, complete sequence
          Length = 171278

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 72     ccacaccagccaagaaaccagtgga 96
              |||||||||||||||| ||||||||
Sbjct: 114212 ccacaccagccaagaagccagtgga 114236



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>gb|AC146526.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0027D12 map near 50283S, complete sequence
          Length = 128988

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    acaccagccaagaaaccagtggag 97
             ||||||||||||||||||| ||||
Sbjct: 96585 acaccagccaagaaaccagaggag 96562



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>gb|AC146946.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0037B06
              map near 50283S, complete sequence
          Length = 149398

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 74     acaccagccaagaaaccagtggag 97
              ||||||||||||||||||| ||||
Sbjct: 137544 acaccagccaagaaaccagaggag 137567



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>gb|AC108500.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1280_A04,
             complete sequence
          Length = 88553

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 104   acggttgaagcacgagatgagaaa 127
             |||| |||||||||||||||||||
Sbjct: 35933 acggctgaagcacgagatgagaaa 35956



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>ref|XM_616959.2| PREDICTED: Bos taurus similar to roundabout 1 isoform b (LOC536815),
            partial mRNA
          Length = 4566

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 66   agaaggccacaccagccaagaaac 89
            ||||||||| ||||||||||||||
Sbjct: 3448 agaaggccagaccagccaagaaac 3471



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>gb|AC140332.3| Mus musculus BAC clone RP23-408K9 from chromosome 19, complete sequence
          Length = 206515

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 248    agaaaggctagctagctcac 267
              ||||||||||||||||||||
Sbjct: 126185 agaaaggctagctagctcac 126166



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>gb|AC126454.3| Mus musculus BAC clone RP23-256L12 from 19, complete sequence
          Length = 188518

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 248    agaaaggctagctagctcac 267
              ||||||||||||||||||||
Sbjct: 174276 agaaaggctagctagctcac 174295



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>emb|AL133548.6| Human DNA sequence from clone RP11-235O14 on chromosome 9q13-21.2
             Contains a novel gene (FLJ20559), the OSTF1 gene for
             osteoclast stimulating factor 1 (OSF, SH3P2) and a CpG
             island, complete sequence
          Length = 153392

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 410   taacatatatttggccccat 429
             ||||||||||||||||||||
Sbjct: 65074 taacatatatttggccccat 65093



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 74       acaccagccaagaaaccagtggag 97
                ||||||||||||||||||| ||||
Sbjct: 14597172 acaccagccaagaaaccagaggag 14597149



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 104      acggttgaagcacgagatgagaaa 127
                |||| |||||||||||||||||||
Sbjct: 22623395 acggctgaagcacgagatgagaaa 22623418



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>dbj|AK105760.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D06, full
            insert sequence
          Length = 1994

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 104  acggttgaagcacgagatgagaaa 127
            |||| |||||||||||||||||||
Sbjct: 1270 acggctgaagcacgagatgagaaa 1293



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>dbj|AK099541.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013032J01, full
            insert sequence
          Length = 1752

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 104  acggttgaagcacgagatgagaaa 127
            |||| |||||||||||||||||||
Sbjct: 1059 acggctgaagcacgagatgagaaa 1082



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>gb|AC003694.1|AC003694 Mus musculus chromosome 19, clone CIT282B21, complete sequence
          Length = 186314

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 248    agaaaggctagctagctcac 267
              ||||||||||||||||||||
Sbjct: 164109 agaaaggctagctagctcac 164090



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 74       acaccagccaagaaaccagtggag 97
                ||||||||||||||||||| ||||
Sbjct: 14679173 acaccagccaagaaaccagaggag 14679150


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,092,544
Number of Sequences: 3902068
Number of extensions: 5092544
Number of successful extensions: 87366
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87248
Number of HSP's gapped (non-prelim): 118
length of query: 705
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 682
effective length of database: 17,143,297,704
effective search space: 11691729034128
effective search space used: 11691729034128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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