| Clone Name | baal35k07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ456882.1| Triticum aestivum tocopherol cyclase (TC) mRNA, complete cds Length = 1769 Score = 842 bits (425), Expect = 0.0 Identities = 491/513 (95%) Strand = Plus / Plus Query: 5 ctcggaaacactttcatacccagtaaaggctcaactcccccggagcgggaaatccctcct 64 ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| Sbjct: 476 ctcggaaacactttcattcccaataaaggctcaactcccccggagcgtgaaatccctcct 535 Query: 65 caggaattttctaatcgcgttttggaaggctaccaagtcactccaacttggcatcagggc 124 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 536 caggaattttctaatcgcgttttggaaggctaccaagtcacaccaacttggcatcagggc 595 Query: 125 ttcatacgtgatgatggaaggtcaaagtatgtgcctaatgtccaaacagctcgttgggag 184 |||||||||||||| ||||||||||||||||| || || ||||||||||||||||||||| Sbjct: 596 ttcatacgtgatgacggaaggtcaaagtatgtaccaaacgtccaaacagctcgttgggag 655 Query: 185 tacagcactcgtccagtgtatggctggggtgatgtcacatctaagcagaagtcaacagct 244 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 656 tacagcacccgtccagtgtatggctggggtgatgtcacatctaagcagaagtcaacagct 715 Query: 245 ggttggcttgctgcttttccattctttgaacctcattggcagatatgcatggctggtggc 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 716 ggttggcttgctgcttttccattctttgaacctcattggcagatatgcatggctggtggc 775 Query: 305 ctatccacaggatggatagaatgggatggagaacggtatgaatttgaaaatgctccctcc 364 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 776 ctatccacaggatggatagaatgggatggagaacggtttgaatttgaaaatgctccctcc 835 Query: 365 tactcagagaagaactggggtgggggtttcccaaggaagtggtactggatccagtgtaat 424 ||||||||||||||||||||||| || |||||||| |||||||||||||||||||| ||| Sbjct: 836 tactcagagaagaactggggtggagggttcccaagaaagtggtactggatccagtgcaat 895 Query: 425 gtcttcccgggcgcatctggtgaagttgctttaactgctgccggtggattaaggaaaatt 484 |||||| | || |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 896 gtcttctcaggaacatctggtgaagttgctttaactgctgctggtggattaaggaaaatt 955 Query: 485 ggattgggagatacctacgagagcccttcactg 517 ||| |||||||||||||||| || ||||||||| Sbjct: 956 ggactgggagatacctacgaaagtccttcactg 988
>ref|XM_464939.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1994 Score = 551 bits (278), Expect = e-153 Identities = 455/514 (88%) Strand = Plus / Plus Query: 4 gctcggaaacactttcatacccagtaaaggctcaactcccccggagcgggaaatccctcc 63 |||||||||||||||||| |||| ||| || ||||| ||||| || |||| | || || Sbjct: 487 gctcggaaacactttcattcccaataatggttcaacacccccagaaggggaggttccccc 546 Query: 64 tcaggaattttctaatcgcgttttggaaggctaccaagtcactccaacttggcatcaggg 123 |||||||||||||| ||| ||||||||||||| |||||| || || | ||||||||| || Sbjct: 547 tcaggaattttctagtcgagttttggaaggcttccaagtgacaccgatttggcatcaagg 606 Query: 124 cttcatacgtgatgatggaaggtcaaagtatgtgcctaatgtccaaacagctcgttggga 183 ||| |||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| Sbjct: 607 ctttatacgtgatgatggaaggtcaaagtatgtgccaaatgtccaaacagctaggtggga 666 Query: 184 gtacagcactcgtccagtgtatggctggggtgatgtcacatctaagcagaagtcaacagc 243 |||||||||||| ||||| |||||||||||||||||||| || |||||||| ||||| || Sbjct: 667 gtacagcactcgaccagtatatggctggggtgatgtcacgtcaaagcagaaatcaactgc 726 Query: 244 tggttggcttgctgcttttccattctttgaacctcattggcagatatgcatggctggtgg 303 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 727 tggttggcttgctgcttttcctttctttgaacctcattggcaaatatgcatggctggtgg 786 Query: 304 cctatccacaggatggatagaatgggatggagaacggtatgaatttgaaaatgctccctc 363 | |||||||||||||||| |||||||| ||||| |||| |||||||||||||||||| || Sbjct: 787 cttatccacaggatggattgaatgggacggagagcggtttgaatttgaaaatgctccttc 846 Query: 364 ctactcagagaagaactggggtgggggtttcccaaggaagtggtactggatccagtgtaa 423 || ||||| ||||||||||||| ||||| || ||||||||||| ||| ||||||| || Sbjct: 847 ttattcagaaaagaactggggtgcaggttttccgaggaagtggtattgggtccagtgcaa 906 Query: 424 tgtcttcccgggcgcatctggtgaagttgctttaactgctgccggtggattaaggaaaat 483 ||||||| | |||||||||||||||||||| ||||| ||||| || |||||||||||||| Sbjct: 907 tgtcttctcaggcgcatctggtgaagttgcattaacggctgctggcggattaaggaaaat 966 Query: 484 tggattgggagatacctacgagagcccttcactg 517 ||||||||| || ||||| || || ||||||||| Sbjct: 967 tggattgggcgaaacctatgaaagtccttcactg 1000
>dbj|AK072052.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111I10, full insert sequence Length = 1995 Score = 551 bits (278), Expect = e-153 Identities = 455/514 (88%) Strand = Plus / Plus Query: 4 gctcggaaacactttcatacccagtaaaggctcaactcccccggagcgggaaatccctcc 63 |||||||||||||||||| |||| ||| || ||||| ||||| || |||| | || || Sbjct: 488 gctcggaaacactttcattcccaataatggttcaacacccccagaaggggaggttccccc 547 Query: 64 tcaggaattttctaatcgcgttttggaaggctaccaagtcactccaacttggcatcaggg 123 |||||||||||||| ||| ||||||||||||| |||||| || || | ||||||||| || Sbjct: 548 tcaggaattttctagtcgagttttggaaggcttccaagtgacaccgatttggcatcaagg 607 Query: 124 cttcatacgtgatgatggaaggtcaaagtatgtgcctaatgtccaaacagctcgttggga 183 ||| |||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| Sbjct: 608 ctttatacgtgatgatggaaggtcaaagtatgtgccaaatgtccaaacagctaggtggga 667 Query: 184 gtacagcactcgtccagtgtatggctggggtgatgtcacatctaagcagaagtcaacagc 243 |||||||||||| ||||| |||||||||||||||||||| || |||||||| ||||| || Sbjct: 668 gtacagcactcgaccagtatatggctggggtgatgtcacgtcaaagcagaaatcaactgc 727 Query: 244 tggttggcttgctgcttttccattctttgaacctcattggcagatatgcatggctggtgg 303 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct: 728 tggttggcttgctgcttttcctttctttgaacctcattggcaaatatgcatggctggtgg 787 Query: 304 cctatccacaggatggatagaatgggatggagaacggtatgaatttgaaaatgctccctc 363 | |||||||||||||||| |||||||| ||||| |||| |||||||||||||||||| || Sbjct: 788 cttatccacaggatggattgaatgggacggagagcggtttgaatttgaaaatgctccttc 847 Query: 364 ctactcagagaagaactggggtgggggtttcccaaggaagtggtactggatccagtgtaa 423 || ||||| ||||||||||||| ||||| || ||||||||||| ||| ||||||| || Sbjct: 848 ttattcagaaaagaactggggtgcaggttttccgaggaagtggtattgggtccagtgcaa 907 Query: 424 tgtcttcccgggcgcatctggtgaagttgctttaactgctgccggtggattaaggaaaat 483 ||||||| | |||||||||||||||||||| ||||| ||||| || |||||||||||||| Sbjct: 908 tgtcttctcaggcgcatctggtgaagttgcattaacggctgctggcggattaaggaaaat 967 Query: 484 tggattgggagatacctacgagagcccttcactg 517 ||||||||| || ||||| || || ||||||||| Sbjct: 968 tggattgggcgaaacctatgaaagtccttcactg 1001
>ref|XM_464940.1| Oryza sativa (japonica cultivar-group), mRNA Length = 987 Score = 519 bits (262), Expect = e-144 Identities = 403/450 (89%) Strand = Plus / Plus Query: 68 gaattttctaatcgcgttttggaaggctaccaagtcactccaacttggcatcagggcttc 127 |||||||||| ||| ||||||||||||| |||||| || || | ||||||||| ||||| Sbjct: 97 gaattttctagtcgagttttggaaggcttccaagtgacaccgatttggcatcaaggcttt 156 Query: 128 atacgtgatgatggaaggtcaaagtatgtgcctaatgtccaaacagctcgttgggagtac 187 |||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| Sbjct: 157 atacgtgatgatggaaggtcaaagtatgtgccaaatgtccaaacagctaggtgggagtac 216 Query: 188 agcactcgtccagtgtatggctggggtgatgtcacatctaagcagaagtcaacagctggt 247 |||||||| ||||| |||||||||||||||||||| || |||||||| ||||| |||||| Sbjct: 217 agcactcgaccagtatatggctggggtgatgtcacgtcaaagcagaaatcaactgctggt 276 Query: 248 tggcttgctgcttttccattctttgaacctcattggcagatatgcatggctggtggccta 307 ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| || Sbjct: 277 tggcttgctgcttttcctttctttgaacctcattggcaaatatgcatggctggtggctta 336 Query: 308 tccacaggatggatagaatgggatggagaacggtatgaatttgaaaatgctccctcctac 367 |||||||||||||| |||||||| ||||| |||| |||||||||||||||||| || || Sbjct: 337 tccacaggatggattgaatgggacggagagcggtttgaatttgaaaatgctccttcttat 396 Query: 368 tcagagaagaactggggtgggggtttcccaaggaagtggtactggatccagtgtaatgtc 427 ||||| ||||||||||||| ||||| || ||||||||||| ||| ||||||| |||||| Sbjct: 397 tcagaaaagaactggggtgcaggttttccgaggaagtggtattgggtccagtgcaatgtc 456 Query: 428 ttcccgggcgcatctggtgaagttgctttaactgctgccggtggattaaggaaaattgga 487 ||| | |||||||||||||||||||| ||||| ||||| || |||||||||||||||||| Sbjct: 457 ttctcaggcgcatctggtgaagttgcattaacggctgctggcggattaaggaaaattgga 516 Query: 488 ttgggagatacctacgagagcccttcactg 517 ||||| || ||||| || || ||||||||| Sbjct: 517 ttgggcgaaacctatgaaagtccttcactg 546
>gb|AF302187.1|AF302187 Zea mays sucrose export defective 1 (sdx1) mRNA, complete cds Length = 1521 Score = 484 bits (244), Expect = e-133 Identities = 403/456 (88%) Strand = Plus / Plus Query: 62 cctcaggaattttctaatcgcgttttggaaggctaccaagtcactccaacttggcatcag 121 |||||||| || |||| || ||||||||||| ||||||||| |||| |||||||| Sbjct: 529 cctcaggatttctctaggcgtgttttggaagggctccaagtcaccccaatatggcatcaa 588 Query: 122 ggcttcatacgtgatgatggaaggtcaaagtatgtgcctaatgtccaaacagctcgttgg 181 || |||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||| Sbjct: 589 ggtttcatacgtgatgatggaaggtcaaactacgtgccaaatgtccaaacagctcgctgg 648 Query: 182 gagtacagcactcgtccagtgtatggctggggtgatgtcacatctaagcagaagtcaaca 241 |||||||||||||||||||| ||||| ||||||||||||| |||||||||| ||| ||| Sbjct: 649 gagtacagcactcgtccagtttatgggtggggtgatgtcaaatctaagcagttgtccaca 708 Query: 242 gctggttggcttgctgcttttccattctttgaacctcattggcagatatgcatggctggt 301 |||||||||||||| |||||||| |||||||||||||||||||| || ||||||||| | Sbjct: 709 gctggttggcttgcagcttttcctttctttgaacctcattggcaaatttgcatggctaga 768 Query: 302 ggcctatccacaggatggatagaatgggatggagaacggtatgaatttgaaaatgctccc 361 ||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 769 ggcttgtccacaggatggatagaatgggatggagaacggtttgaatttgaaaatgctcca 828 Query: 362 tcctactcagagaagaactggggtgggggtttcccaaggaagtggtactggatccagtgt 421 || |||||||| ||||||||||| || ||||| ||||| |||||||| ||||||||||| Sbjct: 829 tcttactcagaaaagaactggggcggaggttttccaagaaagtggtattggatccagtgc 888 Query: 422 aatgtcttcccgggcgcatctggtgaagttgctttaactgctgccggtggattaaggaaa 481 ||||||||||| || || |||||||||||| ||||||||||||| |||||||| |||||| Sbjct: 889 aatgtcttcccaggagcttctggtgaagtttctttaactgctgctggtggattgaggaaa 948 Query: 482 attggattgggagatacctacgagagcccttcactg 517 |||||| | || |||||||| || || ||||||||| Sbjct: 949 attggacttggtgatacctatgaaagtccttcactg 984
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 248 bits (125), Expect = 2e-62 Identities = 161/173 (93%) Strand = Plus / Minus Query: 143 aggtcaaagtatgtgcctaatgtccaaacagctcgttgggagtacagcactcgtccagtg 202 ||||||||||||||||| ||||||||||||||| | ||||||||||||||||| ||||| Sbjct: 10159765 aggtcaaagtatgtgccaaatgtccaaacagctaggtgggagtacagcactcgaccagta 10159706 Query: 203 tatggctggggtgatgtcacatctaagcagaagtcaacagctggttggcttgctgctttt 262 |||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||| Sbjct: 10159705 tatggctggggtgatgtcacgtcaaagcagaaatcaactgctggttggcttgctgctttt 10159646 Query: 263 ccattctttgaacctcattggcagatatgcatggctggtggcctatccacagg 315 || |||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct: 10159645 cctttctttgaacctcattggcaaatatgcatggctggtggcttatccacagg 10159593 Score = 115 bits (58), Expect = 2e-22 Identities = 94/106 (88%) Strand = Plus / Minus Query: 414 tccagtgtaatgtcttcccgggcgcatctggtgaagttgctttaactgctgccggtggat 473 ||||||| ||||||||| | |||||||||||||||||||| ||||| ||||| || |||| Sbjct: 10158280 tccagtgcaatgtcttctcaggcgcatctggtgaagttgcattaacggctgctggcggat 10158221 Query: 474 taaggaaaattggattgggagatacctacgagagcccttcactggt 519 ||||||||||||||||||| || ||||| || || ||||||||||| Sbjct: 10158220 taaggaaaattggattgggcgaaacctatgaaagtccttcactggt 10158175 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 312 caggatggatagaatgggatggagaacggtatgaatttgaaaatgctccctcctactcag 371 |||||||||| |||||||| ||||| |||| |||||||||||||||||| || || |||| Sbjct: 10159150 caggatggattgaatgggacggagagcggtttgaatttgaaaatgctccttcttattcag 10159091 Query: 372 agaagaactggggtgggggtttcccaaggaagtggta 408 | ||||||||||||| ||||| || ||||||||||| Sbjct: 10159090 aaaagaactggggtgcaggttttccgaggaagtggta 10159054 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 66 aggaattttctaatcgcgttttggaaggctaccaagtcactccaacttggcatcagggct 125 |||||||||||| ||| ||||||||||||| |||||| || || | ||||||||| |||| Sbjct: 10161257 aggaattttctagtcgagttttggaaggcttccaagtgacaccgatttggcatcaaggct 10161198 Query: 126 tcatacgtgatgatggaagg 145 | |||||||||||||||||| Sbjct: 10161197 ttatacgtgatgatggaagg 10161178 Score = 44.1 bits (22), Expect = 0.57 Identities = 37/42 (88%) Strand = Plus / Minus Query: 4 gctcggaaacactttcatacccagtaaaggctcaactccccc 45 |||||||||||||||||| |||| ||| || ||||| ||||| Sbjct: 10161990 gctcggaaacactttcattcccaataatggttcaacaccccc 10161949
>dbj|AP005536.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0055M07 Length = 150901 Score = 248 bits (125), Expect = 2e-62 Identities = 161/173 (93%) Strand = Plus / Minus Query: 143 aggtcaaagtatgtgcctaatgtccaaacagctcgttgggagtacagcactcgtccagtg 202 ||||||||||||||||| ||||||||||||||| | ||||||||||||||||| ||||| Sbjct: 32131 aggtcaaagtatgtgccaaatgtccaaacagctaggtgggagtacagcactcgaccagta 32072 Query: 203 tatggctggggtgatgtcacatctaagcagaagtcaacagctggttggcttgctgctttt 262 |||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||| Sbjct: 32071 tatggctggggtgatgtcacgtcaaagcagaaatcaactgctggttggcttgctgctttt 32012 Query: 263 ccattctttgaacctcattggcagatatgcatggctggtggcctatccacagg 315 || |||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct: 32011 cctttctttgaacctcattggcaaatatgcatggctggtggcttatccacagg 31959 Score = 115 bits (58), Expect = 2e-22 Identities = 94/106 (88%) Strand = Plus / Minus Query: 414 tccagtgtaatgtcttcccgggcgcatctggtgaagttgctttaactgctgccggtggat 473 ||||||| ||||||||| | |||||||||||||||||||| ||||| ||||| || |||| Sbjct: 30646 tccagtgcaatgtcttctcaggcgcatctggtgaagttgcattaacggctgctggcggat 30587 Query: 474 taaggaaaattggattgggagatacctacgagagcccttcactggt 519 ||||||||||||||||||| || ||||| || || ||||||||||| Sbjct: 30586 taaggaaaattggattgggcgaaacctatgaaagtccttcactggt 30541 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 312 caggatggatagaatgggatggagaacggtatgaatttgaaaatgctccctcctactcag 371 |||||||||| |||||||| ||||| |||| |||||||||||||||||| || || |||| Sbjct: 31516 caggatggattgaatgggacggagagcggtttgaatttgaaaatgctccttcttattcag 31457 Query: 372 agaagaactggggtgggggtttcccaaggaagtggta 408 | ||||||||||||| ||||| || ||||||||||| Sbjct: 31456 aaaagaactggggtgcaggttttccgaggaagtggta 31420 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 66 aggaattttctaatcgcgttttggaaggctaccaagtcactccaacttggcatcagggct 125 |||||||||||| ||| ||||||||||||| |||||| || || | ||||||||| |||| Sbjct: 33623 aggaattttctagtcgagttttggaaggcttccaagtgacaccgatttggcatcaaggct 33564 Query: 126 tcatacgtgatgatggaagg 145 | |||||||||||||||||| Sbjct: 33563 ttatacgtgatgatggaagg 33544 Score = 44.1 bits (22), Expect = 0.57 Identities = 37/42 (88%) Strand = Plus / Minus Query: 4 gctcggaaacactttcatacccagtaaaggctcaactccccc 45 |||||||||||||||||| |||| ||| || ||||| ||||| Sbjct: 34356 gctcggaaacactttcattcccaataatggttcaacaccccc 34315
>dbj|AP004770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017G06 Length = 150628 Score = 248 bits (125), Expect = 2e-62 Identities = 161/173 (93%) Strand = Plus / Minus Query: 143 aggtcaaagtatgtgcctaatgtccaaacagctcgttgggagtacagcactcgtccagtg 202 ||||||||||||||||| ||||||||||||||| | ||||||||||||||||| ||||| Sbjct: 107459 aggtcaaagtatgtgccaaatgtccaaacagctaggtgggagtacagcactcgaccagta 107400 Query: 203 tatggctggggtgatgtcacatctaagcagaagtcaacagctggttggcttgctgctttt 262 |||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||| Sbjct: 107399 tatggctggggtgatgtcacgtcaaagcagaaatcaactgctggttggcttgctgctttt 107340 Query: 263 ccattctttgaacctcattggcagatatgcatggctggtggcctatccacagg 315 || |||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct: 107339 cctttctttgaacctcattggcaaatatgcatggctggtggcttatccacagg 107287 Score = 115 bits (58), Expect = 2e-22 Identities = 94/106 (88%) Strand = Plus / Minus Query: 414 tccagtgtaatgtcttcccgggcgcatctggtgaagttgctttaactgctgccggtggat 473 ||||||| ||||||||| | |||||||||||||||||||| ||||| ||||| || |||| Sbjct: 105974 tccagtgcaatgtcttctcaggcgcatctggtgaagttgcattaacggctgctggcggat 105915 Query: 474 taaggaaaattggattgggagatacctacgagagcccttcactggt 519 ||||||||||||||||||| || ||||| || || ||||||||||| Sbjct: 105914 taaggaaaattggattgggcgaaacctatgaaagtccttcactggt 105869 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 312 caggatggatagaatgggatggagaacggtatgaatttgaaaatgctccctcctactcag 371 |||||||||| |||||||| ||||| |||| |||||||||||||||||| || || |||| Sbjct: 106844 caggatggattgaatgggacggagagcggtttgaatttgaaaatgctccttcttattcag 106785 Query: 372 agaagaactggggtgggggtttcccaaggaagtggta 408 | ||||||||||||| ||||| || ||||||||||| Sbjct: 106784 aaaagaactggggtgcaggttttccgaggaagtggta 106748 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 66 aggaattttctaatcgcgttttggaaggctaccaagtcactccaacttggcatcagggct 125 |||||||||||| ||| ||||||||||||| |||||| || || | ||||||||| |||| Sbjct: 108951 aggaattttctagtcgagttttggaaggcttccaagtgacaccgatttggcatcaaggct 108892 Query: 126 tcatacgtgatgatggaagg 145 | |||||||||||||||||| Sbjct: 108891 ttatacgtgatgatggaagg 108872 Score = 44.1 bits (22), Expect = 0.57 Identities = 37/42 (88%) Strand = Plus / Minus Query: 4 gctcggaaacactttcatacccagtaaaggctcaactccccc 45 |||||||||||||||||| |||| ||| || ||||| ||||| Sbjct: 109684 gctcggaaacactttcattcccaataatggttcaacaccccc 109643
>gb|AY107807.1| Zea mays PCO145578 mRNA sequence Length = 736 Score = 141 bits (71), Expect = 3e-30 Identities = 125/143 (87%) Strand = Plus / Plus Query: 375 agaactggggtgggggtttcccaaggaagtggtactggatccagtgtaatgtcttcccgg 434 |||||||||| || ||||| ||||| |||||||| ||||||||||| ||||||||||| | Sbjct: 8 agaactggggcggaggttttccaagaaagtggtattggatccagtgcaatgtcttcccag 67 Query: 435 gcgcatctggtgaagttgctttaactgctgccggtggattaaggaaaattggattgggag 494 | || |||||||||||| ||||||||||||| |||||||| |||||||||||| | || | Sbjct: 68 gagcttctggtgaagtttctttaactgctgctggtggattgaggaaaattggacttggtg 127 Query: 495 atacctacgagagcccttcactg 517 ||||||| || || ||||||||| Sbjct: 128 atacctatgaaagtccttcactg 150
>gb|DQ456881.1| Gossypium hirsutum tocopherol cyclase (TC) mRNA, complete cds Length = 1529 Score = 135 bits (68), Expect = 2e-28 Identities = 176/212 (83%) Strand = Plus / Plus Query: 176 cgttgggagtacagcactcgtccagtgtatggctggggtgatgtcacatctaagcagaag 235 |||||||||||||| ||||| || ||||| ||||||||||| || ||||||||| Sbjct: 759 cgttgggagtacagtactcgccccacctatggatggggtgatgttgggtccaagcagaag 818 Query: 236 tcaacagctggttggcttgctgcttttccattctttgaacctcattggcagatatgcatg 295 ||||||||||| ||||||||||||||||| | || ||||| |||||||| || |||||| Sbjct: 819 tcaacagctggctggcttgctgcttttcccatattcgaaccccattggcaaatttgcatg 878 Query: 296 gctggtggcctatccacaggatggatagaatgggatggagaacggtatgaatttgaaaat 355 |||||||| || || ||||| |||||||| |||||||| ||| ||| ||| ||| || || Sbjct: 879 gctggtggactttcaacaggttggatagagtgggatggtgaaaggtttgagtttcaagat 938 Query: 356 gctccctcctactcagagaagaactggggtgg 387 ||||| || ||||| || ||||| |||||||| Sbjct: 939 gctccttcatactcggaaaagaattggggtgg 970
>ref|NM_119430.3| Arabidopsis thaliana VTE1 (VITAMIN E DEFICIENT 1) AT4G32770 (VTE1) mRNA, complete cds Length = 1689 Score = 133 bits (67), Expect = 8e-28 Identities = 232/287 (80%) Strand = Plus / Plus Query: 173 gctcgttgggagtacagcactcgtccagtgtatggctggggtgatgtcacatctaagcag 232 |||||||||||||| || |||||||| || || || ||||||||||| | || ||| Sbjct: 703 gctcgttgggagtatagtactcgtcccgtttacggttggggtgatgttggggccaaacag 762 Query: 233 aagtcaacagctggttggcttgctgcttttccattctttgaacctcattggcagatatgc 292 |||||||| || || |||| ||| |||||||| | ||||| |||||||||||||||||| Sbjct: 763 aagtcaactgcaggctggcctgcagcttttcctgtatttgagcctcattggcagatatgc 822 Query: 293 atggctggtggcctatccacaggatggatagaatgggatggagaacggtatgaatttgaa 352 ||||| || ||||| |||||||| ||||||||||||| || ||| ||| ||| ||| Sbjct: 823 atggcaggaggcctttccacagggtggatagaatggggcggtgaaaggtttgagtttcgg 882 Query: 353 aatgctccctcctactcagagaagaactggggtgggggtttcccaaggaagtggtactgg 412 |||| || || || ||||||||||| |||||||| || |||||||| || |||| ||| Sbjct: 883 gatgcaccttcttattcagagaagaattggggtggaggcttcccaagaaaatggttttgg 942 Query: 413 atccagtgtaatgtcttcccgggcgcatctggtgaagttgctttaac 459 |||||||||||||||| || ||| |||| |||||||||||||| Sbjct: 943 gtccagtgtaatgtctttgaaggggcaactggagaagttgctttaac 989
>gb|AF302188.1|AF302188 Arabidopsis thaliana sucrose export defective 1 precursor (SXD1) mRNA, complete cds Length = 1467 Score = 133 bits (67), Expect = 8e-28 Identities = 232/287 (80%) Strand = Plus / Plus Query: 173 gctcgttgggagtacagcactcgtccagtgtatggctggggtgatgtcacatctaagcag 232 |||||||||||||| || |||||||| || || || ||||||||||| | || ||| Sbjct: 673 gctcgttgggagtatagtactcgtcccgtttacggttggggtgatgttggggccaaacag 732 Query: 233 aagtcaacagctggttggcttgctgcttttccattctttgaacctcattggcagatatgc 292 |||||||| || || |||| ||| |||||||| | ||||| |||||||||||||||||| Sbjct: 733 aagtcaactgcaggctggcctgcagcttttcctgtatttgagcctcattggcagatatgc 792 Query: 293 atggctggtggcctatccacaggatggatagaatgggatggagaacggtatgaatttgaa 352 ||||| || ||||| |||||||| ||||||||||||| || ||| ||| ||| ||| Sbjct: 793 atggcaggaggcctttccacagggtggatagaatggggcggtgaaaggtttgagtttcgg 852 Query: 353 aatgctccctcctactcagagaagaactggggtgggggtttcccaaggaagtggtactgg 412 |||| || || || ||||||||||| |||||||| || |||||||| || |||| ||| Sbjct: 853 gatgcaccttcttattcagagaagaattggggtggaggcttcccaagaaaatggttttgg 912 Query: 413 atccagtgtaatgtcttcccgggcgcatctggtgaagttgctttaac 459 |||||||||||||||| || ||| |||| |||||||||||||| Sbjct: 913 gtccagtgtaatgtctttgaaggggcaactggagaagttgctttaac 959
>emb|BX826499.1|CNS0A35G Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB31ZD07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1625 Score = 133 bits (67), Expect = 8e-28 Identities = 232/287 (80%) Strand = Plus / Plus Query: 173 gctcgttgggagtacagcactcgtccagtgtatggctggggtgatgtcacatctaagcag 232 |||||||||||||| || |||||||| || || || ||||||||||| | || ||| Sbjct: 702 gctcgttgggagtatagtactcgtcccgtttacggttggggtgatgttggggccaaacag 761 Query: 233 aagtcaacagctggttggcttgctgcttttccattctttgaacctcattggcagatatgc 292 |||||||| || || |||| ||| |||||||| | ||||| |||||||||||||||||| Sbjct: 762 aagtcaactgcaggctggcctgcagcttttcctgtatttgagcctcattggcagatatgc 821 Query: 293 atggctggtggcctatccacaggatggatagaatgggatggagaacggtatgaatttgaa 352 ||||| || ||||| |||||||| ||||||||||||| || ||| ||| ||| ||| Sbjct: 822 atggcaggaggcctttccacagggtggatagaatggggcggtgaaaggtttgagtttcgg 881 Query: 353 aatgctccctcctactcagagaagaactggggtgggggtttcccaaggaagtggtactgg 412 |||| || || || ||||||||||| |||||||| || |||||||| || |||| ||| Sbjct: 882 gatgcaccttcttattcagagaagaattggggtggaggcttcccaagaaaatggttttgg 941 Query: 413 atccagtgtaatgtcttcccgggcgcatctggtgaagttgctttaac 459 |||||||||||||||| || ||| |||| |||||||||||||| Sbjct: 942 gtccagtgtaatgtctttgaaggggcaactggagaagttgctttaac 988
>gb|DQ229849.1| Helianthus annuus cultivar RHA801 tocopherol cyclase (TC) gene, complete cds Length = 5354 Score = 121 bits (61), Expect = 3e-24 Identities = 109/125 (87%) Strand = Plus / Plus Query: 176 cgttgggagtacagcactcgtccagtgtatggctggggtgatgtcacatctaagcagaag 235 ||||||||||||||||| || || || ||||| ||||||||||| ||||| |||||| Sbjct: 2320 cgttgggagtacagcacacgccctgtttatggttggggtgatgtagggtctaaacagaag 2379 Query: 236 tcaacagctggttggcttgctgcttttccattctttgaacctcattggcagatatgcatg 295 || |||||||| ||||||||||||||||| | ||||||||||||||||| ||||||||| Sbjct: 2380 tccacagctggctggcttgctgcttttcctgtatttgaacctcattggcaaatatgcatg 2439 Query: 296 gctgg 300 ||||| Sbjct: 2440 gctgg 2444 Score = 48.1 bits (24), Expect = 0.037 Identities = 78/96 (81%) Strand = Plus / Plus Query: 312 caggatggatagaatgggatggagaacggtatgaatttgaaaatgctccctcctactcag 371 |||| |||||||| |||| || ||| | ||||| |||||||||||||| || || | | Sbjct: 4249 caggttggatagagtggggtgatgaaagatatgagtttgaaaatgctccttcttattgtg 4308 Query: 372 agaagaactggggtgggggtttcccaaggaagtggt 407 ||||||| |||||||| ||||| || || ||||||| Sbjct: 4309 agaagaattggggtggaggttttcctagaaagtggt 4344 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 113 tggcatcagggcttcatacgtgatgatggaaggt 146 |||||||| || ||||| |||||||||||||||| Sbjct: 1210 tggcatcaaggtttcatccgtgatgatggaaggt 1243
>gb|DQ229848.1| Helianthus annuus cultivar RHA280 tocopherol cyclase (TC) gene, complete cds Length = 5354 Score = 121 bits (61), Expect = 3e-24 Identities = 109/125 (87%) Strand = Plus / Plus Query: 176 cgttgggagtacagcactcgtccagtgtatggctggggtgatgtcacatctaagcagaag 235 ||||||||||||||||| || || || ||||| ||||||||||| ||||| |||||| Sbjct: 2320 cgttgggagtacagcacacgccctgtttatggttggggtgatgtagggtctaaacagaag 2379 Query: 236 tcaacagctggttggcttgctgcttttccattctttgaacctcattggcagatatgcatg 295 || |||||||| ||||||||||||||||| | ||||||||||||||||| ||||||||| Sbjct: 2380 tccacagctggctggcttgctgcttttcctgtatttgaacctcattggcaaatatgcatg 2439 Query: 296 gctgg 300 ||||| Sbjct: 2440 gctgg 2444 Score = 48.1 bits (24), Expect = 0.037 Identities = 78/96 (81%) Strand = Plus / Plus Query: 312 caggatggatagaatgggatggagaacggtatgaatttgaaaatgctccctcctactcag 371 |||| |||||||| |||| || ||| | ||||| |||||||||||||| || || | | Sbjct: 4249 caggttggatagagtggggtgatgaaagatatgagtttgaaaatgctccttcttattgtg 4308 Query: 372 agaagaactggggtgggggtttcccaaggaagtggt 407 ||||||| |||||||| ||||| || || ||||||| Sbjct: 4309 agaagaattggggtggaggttttcctagaaagtggt 4344 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 113 tggcatcagggcttcatacgtgatgatggaaggt 146 |||||||| || ||||| |||||||||||||||| Sbjct: 1210 tggcatcaaggtttcatccgtgatgatggaaggt 1243
>gb|DQ229847.1| Helianthus annuus cultivar LG24 tocopherol cyclase (TC) gene, complete cds Length = 5354 Score = 121 bits (61), Expect = 3e-24 Identities = 109/125 (87%) Strand = Plus / Plus Query: 176 cgttgggagtacagcactcgtccagtgtatggctggggtgatgtcacatctaagcagaag 235 ||||||||||||||||| || || || ||||| ||||||||||| ||||| |||||| Sbjct: 2320 cgttgggagtacagcacacgccctgtttatggttggggtgatgtagggtctaaacagaag 2379 Query: 236 tcaacagctggttggcttgctgcttttccattctttgaacctcattggcagatatgcatg 295 || |||||||| ||||||||||||||||| | ||||||||||||||||| ||||||||| Sbjct: 2380 tccacagctggctggcttgctgcttttcctgtatttgaacctcattggcaaatatgcatg 2439 Query: 296 gctgg 300 ||||| Sbjct: 2440 gctgg 2444 Score = 48.1 bits (24), Expect = 0.037 Identities = 78/96 (81%) Strand = Plus / Plus Query: 312 caggatggatagaatgggatggagaacggtatgaatttgaaaatgctccctcctactcag 371 |||| |||||||| |||| || ||| | ||||| |||||||||||||| || || | | Sbjct: 4249 caggttggatagagtggggtgatgaaagatatgagtttgaaaatgctccttcttattgtg 4308 Query: 372 agaagaactggggtgggggtttcccaaggaagtggt 407 ||||||| |||||||| ||||| || || ||||||| Sbjct: 4309 agaagaattggggtggaggttttcctagaaagtggt 4344 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 113 tggcatcagggcttcatacgtgatgatggaaggt 146 |||||||| || ||||| |||||||||||||||| Sbjct: 1210 tggcatcaaggtttcatccgtgatgatggaaggt 1243
>gb|DQ229846.1| Helianthus annuus cultivar R112 tocopherol cyclase (TC) gene, complete cds Length = 5389 Score = 121 bits (61), Expect = 3e-24 Identities = 109/125 (87%) Strand = Plus / Plus Query: 176 cgttgggagtacagcactcgtccagtgtatggctggggtgatgtcacatctaagcagaag 235 ||||||||||||||||| || || || ||||| ||||||||||| ||||| |||||| Sbjct: 2320 cgttgggagtacagcacacgccctgtttatggttggggtgatgtagggtctaaacagaag 2379 Query: 236 tcaacagctggttggcttgctgcttttccattctttgaacctcattggcagatatgcatg 295 || |||||||| ||||||||||||||||| | ||||||||||||||||| ||||||||| Sbjct: 2380 tccacagctggctggcttgctgcttttcctgtatttgaacctcattggcaaatatgcatg 2439 Query: 296 gctgg 300 ||||| Sbjct: 2440 gctgg 2444 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 113 tggcatcagggcttcatacgtgatgatggaaggt 146 |||||||| || ||||| |||||||||||||||| Sbjct: 1210 tggcatcaaggtttcatccgtgatgatggaaggt 1243
>gb|DQ229845.1| Helianthus annuus cultivar NMS373 tocopherol cyclase (TC) gene, complete cds Length = 5354 Score = 121 bits (61), Expect = 3e-24 Identities = 109/125 (87%) Strand = Plus / Plus Query: 176 cgttgggagtacagcactcgtccagtgtatggctggggtgatgtcacatctaagcagaag 235 ||||||||||||||||| || || || ||||| ||||||||||| ||||| |||||| Sbjct: 2320 cgttgggagtacagcacacgccctgtttatggttggggtgatgtagggtctaaacagaag 2379 Query: 236 tcaacagctggttggcttgctgcttttccattctttgaacctcattggcagatatgcatg 295 || |||||||| ||||||||||||||||| | ||||||||||||||||| ||||||||| Sbjct: 2380 tccacagctggctggcttgctgcttttcctgtatttgaacctcattggcaaatatgcatg 2439 Query: 296 gctgg 300 ||||| Sbjct: 2440 gctgg 2444 Score = 48.1 bits (24), Expect = 0.037 Identities = 78/96 (81%) Strand = Plus / Plus Query: 312 caggatggatagaatgggatggagaacggtatgaatttgaaaatgctccctcctactcag 371 |||| |||||||| |||| || ||| | ||||| |||||||||||||| || || | | Sbjct: 4249 caggttggatagagtggggtgatgaaagatatgagtttgaaaatgctccttcttattgtg 4308 Query: 372 agaagaactggggtgggggtttcccaaggaagtggt 407 ||||||| |||||||| ||||| || || ||||||| Sbjct: 4309 agaagaattggggtggaggttttcctagaaagtggt 4344 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 113 tggcatcagggcttcatacgtgatgatggaaggt 146 |||||||| || ||||| |||||||||||||||| Sbjct: 1210 tggcatcaaggtttcatccgtgatgatggaaggt 1243
>emb|AL161582.2|ATCHRIV78 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78 Length = 198669 Score = 85.7 bits (43), Expect = 2e-13 Identities = 118/143 (82%) Strand = Plus / Plus Query: 173 gctcgttgggagtacagcactcgtccagtgtatggctggggtgatgtcacatctaagcag 232 |||||||||||||| || |||||||| || || || ||||||||||| | || ||| Sbjct: 28192 gctcgttgggagtatagtactcgtcccgtttacggttggggtgatgttggggccaaacag 28251 Query: 233 aagtcaacagctggttggcttgctgcttttccattctttgaacctcattggcagatatgc 292 |||||||| || || |||| ||| |||||||| | ||||| |||||||||||||||||| Sbjct: 28252 aagtcaactgcaggctggcctgcagcttttcctgtatttgagcctcattggcagatatgc 28311 Query: 293 atggctggtggcctatccacagg 315 ||||| || ||||| |||||||| Sbjct: 28312 atggcaggaggcctttccacagg 28334 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 368 tcagagaagaactggggtgggggtttcccaag 399 ||||||||||| |||||||| || |||||||| Sbjct: 28536 tcagagaagaattggggtggaggcttcccaag 28567
>emb|AL022537.1|ATF4D11 Arabidopsis thaliana DNA chromosome 4, BAC clone F4D11 (ESSAII project) Length = 101715 Score = 85.7 bits (43), Expect = 2e-13 Identities = 118/143 (82%) Strand = Plus / Minus Query: 173 gctcgttgggagtacagcactcgtccagtgtatggctggggtgatgtcacatctaagcag 232 |||||||||||||| || |||||||| || || || ||||||||||| | || ||| Sbjct: 10627 gctcgttgggagtatagtactcgtcccgtttacggttggggtgatgttggggccaaacag 10568 Query: 233 aagtcaacagctggttggcttgctgcttttccattctttgaacctcattggcagatatgc 292 |||||||| || || |||| ||| |||||||| | ||||| |||||||||||||||||| Sbjct: 10567 aagtcaactgcaggctggcctgcagcttttcctgtatttgagcctcattggcagatatgc 10508 Query: 293 atggctggtggcctatccacagg 315 ||||| || ||||| |||||||| Sbjct: 10507 atggcaggaggcctttccacagg 10485 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 368 tcagagaagaactggggtgggggtttcccaag 399 ||||||||||| |||||||| || |||||||| Sbjct: 10283 tcagagaagaattggggtggaggcttcccaag 10252
>gb|AY536918.1| Solanum tuberosum tocopherol cyclase (SXD1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1721 Score = 83.8 bits (42), Expect = 7e-13 Identities = 156/194 (80%) Strand = Plus / Plus Query: 227 aagcagaagtcaacagctggttggcttgctgcttttccattctttgaacctcattggcag 286 ||||||||||| || || || |||| ||||||||||||| | ||||| || |||||||| Sbjct: 818 aagcagaagtccacggcaggatggcctgctgcttttccagtatttgagccacattggcaa 877 Query: 287 atatgcatggctggtggcctatccacaggatggatagaatgggatggagaacggtatgaa 346 | |||||||| | ||| || || ||||| |||||||| |||||||| | |||| ||| Sbjct: 878 gtttgcatggcagctggactttcaacaggctggatagagtgggatggtcagcggtttgag 937 Query: 347 tttgaaaatgctccctcctactcagagaagaactggggtgggggtttcccaaggaagtgg 406 ||| ||||||| || || ||||| || |||||||||||||| |||||||| |||||| Sbjct: 938 tttcaaaatgccccttcttactccgaaaagaactggggtggttccttcccaagaaagtgg 997 Query: 407 tactggatccagtg 420 | ||| ||||||| Sbjct: 998 ttttgggtccagtg 1011
>gb|AY336944.1| Eucalyptus gunnii tocopherol cyclase (Sxd1) mRNA, complete cds Length = 1947 Score = 67.9 bits (34), Expect = 4e-08 Identities = 142/178 (79%) Strand = Plus / Plus Query: 230 cagaagtcaacagctggttggcttgctgcttttccattctttgaacctcattggcagata 289 ||||||||||| || |||||| | || |||||||| | || ||||| |||||||| || Sbjct: 980 cagaagtcaaccgcgggttggttagcagcttttcctgtattcgaaccccattggcaaatt 1039 Query: 290 tgcatggctggtggcctatccacaggatggatagaatgggatggagaacggtatgaattt 349 |||||||| || || || || || || |||||||||||||| |||||| | | ||| || Sbjct: 1040 tgcatggcaggcgggctgtcaactggttggatagaatgggaaggagaaagatttgagttc 1099 Query: 350 gaaaatgctccctcctactcagagaagaactggggtgggggtttcccaaggaagtggt 407 || | || ||||| || ||||| || || |||||||||| |||||||||||||||| Sbjct: 1100 caagacgcgccctcttattcagaaaaaaattggggtggggccttcccaaggaagtggt 1157
>ref|XM_471841.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1953 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 543 aggaatgtgtgttccatctatggccccaata 573 ||||||||| ||||||||||| ||||||||| Sbjct: 1662 aggaatgtgggttccatctatcgccccaata 1632
>ref|XM_471525.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1236 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 534 cacaacgcaaggaatgtgtgttccatc 560 ||||| ||||||||||||||||||||| Sbjct: 846 cacaatgcaaggaatgtgtgttccatc 820
>emb|AL663005.3|OSJN00208 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0062H02, complete sequence Length = 166747 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 543 aggaatgtgtgttccatctatggccccaata 573 ||||||||| ||||||||||| ||||||||| Sbjct: 72069 aggaatgtgggttccatctatcgccccaata 72039
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 543 aggaatgtgtgttccatctatggccccaata 573 ||||||||| ||||||||||| ||||||||| Sbjct: 14915331 aggaatgtgggttccatctatcgccccaata 14915301 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 543 aggaatgtgtgttccatctatggccccaata 573 ||||||||| ||||||||||| ||||||||| Sbjct: 14513531 aggaatgtgggttccatctatcgccccaata 14513501 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 534 cacaacgcaaggaatgtgtgttccatc 560 ||||| ||||||||||||||||||||| Sbjct: 11647707 cacaatgcaaggaatgtgtgttccatc 11647733
>emb|AL663008.3|OSJN00209 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0058J09, complete sequence Length = 164911 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 534 cacaacgcaaggaatgtgtgttccatc 560 ||||| ||||||||||||||||||||| Sbjct: 130717 cacaatgcaaggaatgtgtgttccatc 130743
>ref|XM_382108.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01932.1) partial mRNA Length = 1311 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 247 ttggcttgctgcttttccattc 268 |||||||||||||||||||||| Sbjct: 860 ttggcttgctgcttttccattc 839
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Plus Query: 543 aggaatgtgtgttccatctatggccccaat 572 ||||||||| ||||||||||| |||||||| Sbjct: 8594416 aggaatgtgggttccatctattgccccaat 8594445
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Plus Query: 543 aggaatgtgtgttccatctatggccccaat 572 ||||||||| ||||||||||| |||||||| Sbjct: 38706468 aggaatgtgggttccatctattgccccaat 38706497
>dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1099D03 Length = 191022 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Plus Query: 543 aggaatgtgtgttccatctatggccccaat 572 ||||||||| ||||||||||| |||||||| Sbjct: 164441 aggaatgtgggttccatctattgccccaat 164470
>dbj|AP005824.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0669H03 Length = 167878 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Plus Query: 543 aggaatgtgtgttccatctatggccccaat 572 ||||||||| ||||||||||| |||||||| Sbjct: 126884 aggaatgtgggttccatctattgccccaat 126913
>dbj|AP005255.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0087F05 Length = 143908 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Plus Query: 543 aggaatgtgtgttccatctatggccccaat 572 ||||||||| ||||||||||| |||||||| Sbjct: 8156 aggaatgtgggttccatctattgccccaat 8185
>dbj|AP006077.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT46B01, TM0116, complete sequence Length = 121207 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 546 aatgtgtgttccatctatggccccaa 571 |||||||||||||||||| ||||||| Sbjct: 82564 aatgtgtgttccatctattgccccaa 82589
>gb|AC100212.8| Mus musculus chromosome 18, clone RP23-60D22, complete sequence Length = 225698 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 tcaaagtatgtgcctaatgtc 166 ||||||||||||||||||||| Sbjct: 30213 tcaaagtatgtgcctaatgtc 30233
>emb|AL137141.10| Human DNA sequence from clone RP11-139H14 on chromosome 13 Contains the 5' end of the CPB2 gene for carboxypeptidase B2 (plasma, carboxypeptidase U), 2 novel genes, the LCP1 gene for lymphocyte cytosolic protein 1 (L-plastin) and a CpG Island, complete sequence Length = 180680 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 380 tggggtgggggtttcccaaggaagt 404 |||||||||| |||||||||||||| Sbjct: 69543 tggggtggggctttcccaaggaagt 69567
>emb|BX842623.1| Neurospora crassa DNA linkage group I BAC clone B2I10 Length = 83703 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 tccattctttgaacctcattg 282 ||||||||||||||||||||| Sbjct: 61216 tccattctttgaacctcattg 61236
>emb|AL442164.1|NCB2J23 Neurospora crassa DNA linkage group I BAC clone B2J23 Length = 65725 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 262 tccattctttgaacctcattg 282 ||||||||||||||||||||| Sbjct: 65415 tccattctttgaacctcattg 65395
>gb|AC007538.5| Homo sapiens Xq28 PAC RPCI6-224C24 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 178544 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 217 tgtcacatctaagcagaagtc 237 ||||||||||||||||||||| Sbjct: 13368 tgtcacatctaagcagaagtc 13348
>gb|S54531.1| L-plastin {exon 1, promoter} [human, Genomic, 3231 nt] Length = 3231 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 380 tggggtgggggtttcccaaggaagt 404 |||||||||| |||||||||||||| Sbjct: 1839 tggggtggggctttcccaaggaagt 1863
>gb|L05490.1|HUMLPLSTN1 Homo sapiens L-plastin gene, exon 1 and promoter region Length = 3231 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 380 tggggtgggggtttcccaaggaagt 404 |||||||||| |||||||||||||| Sbjct: 1839 tggggtggggctttcccaaggaagt 1863
>gb|AC166107.4| Mus musculus BAC clone RP23-205A7 from chromosome 6, complete sequence Length = 177843 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 ctgcttttccattctttgaa 274 |||||||||||||||||||| Sbjct: 172985 ctgcttttccattctttgaa 172966
>gb|AY366190.1| Pichia angusta coiled-coil protein Pdd18p (PDD18) gene, complete cds Length = 4348 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 tgctctgcttccggcacaac 539 |||||||||||||||||||| Sbjct: 3663 tgctctgcttccggcacaac 3644
>gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosome 8, complete sequence Length = 177226 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 204 atggctggggtgatgtcacatcta 227 |||||||||||| ||||||||||| Sbjct: 47238 atggctggggtggtgtcacatcta 47215
>emb|CR933520.10| Zebrafish DNA sequence from clone CH211-28A20 in linkage group 8, complete sequence Length = 165296 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 tgaagttgctttaactgctg 464 |||||||||||||||||||| Sbjct: 71603 tgaagttgctttaactgctg 71584
>gb|AC024608.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-333I24, complete sequence Length = 215829 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 agtacagcactcgtccagtgtatg 206 ||||||||||| |||||||||||| Sbjct: 185306 agtacagcacttgtccagtgtatg 185283
>gb|AE004095.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 3 of 251 of the complete chromosome Length = 15112 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 cgttttggaaggctaccaag 101 |||||||||||||||||||| Sbjct: 3752 cgttttggaaggctaccaag 3733
>gb|AC138263.8| Mus musculus chromosome 6, clone RP23-291O5, complete sequence Length = 206016 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 ctgcttttccattctttgaa 274 |||||||||||||||||||| Sbjct: 150162 ctgcttttccattctttgaa 150181
>gb|AC115802.10| Mus musculus, clone RP23-408J7, complete sequence Length = 185710 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 aagtatgtgcctaatgtcca 168 |||||||||||||||||||| Sbjct: 176719 aagtatgtgcctaatgtcca 176700
>gb|AC044849.12| Homo sapiens chromosome 8, clone RP11-489E7, complete sequence Length = 149301 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 351 aaaatgctccctcctactcagaga 374 |||| ||||||||||||||||||| Sbjct: 63172 aaaaagctccctcctactcagaga 63149
>ref|NM_001016308.2| Xenopus tropicalis apoptosis antagonizing transcription factor (aatf), mRNA Length = 1864 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 ttctttgaacctcattggca 285 |||||||||||||||||||| Sbjct: 1807 ttctttgaacctcattggca 1826
>emb|AL596181.10| Mouse DNA sequence from clone RP23-234K24 on chromosome 11 Contains nine novel genes, the Trpv2 for member 2 transient receptor potential cation channel subfamily V, the Ubb gene for ubiquitin B, the 3' end of the gene for the ortholog of human and rat phosphatidylinositol glycan class L PIGL and five CpG islands, complete sequence Length = 195339 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 268 ctttgaacctcattggcagatatg 291 |||||||| ||||||||||||||| Sbjct: 1317 ctttgaacatcattggcagatatg 1340
>emb|AL627097.6| Mouse DNA sequence from clone RP23-59B16 on chromosome 11 Contains a novel pseudogene, the Zfp287 gene for zinc finger protein 287, three novel genes (4921522H14Rik), a WD repeat and SOCS box containing protein 2 pseudogene (LOC213946), the gene for a novel protein (MGC39058) and the 5' end of the Trim16 gene for tripartite motif protein 16, complete sequence Length = 161686 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 ctttgaacctcattggcagatatg 291 |||||||| ||||||||||||||| Sbjct: 684 ctttgaacatcattggcagatatg 661
>emb|CR847543.13| Zebrafish DNA sequence from clone DKEY-183P4 in linkage group 8, complete sequence Length = 207382 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 624 cttggctgaaagtttcatct 643 |||||||||||||||||||| Sbjct: 86477 cttggctgaaagtttcatct 86496
>gb|AC083963.6| Homo sapiens chromosome 8, clone RP11-91A19, complete sequence Length = 146377 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 cctcctactcagagaagaac 379 |||||||||||||||||||| Sbjct: 45469 cctcctactcagagaagaac 45450
>gb|AC091165.15| Homo sapiens chromosome 8, clone RP11-366G13, complete sequence Length = 188456 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 351 aaaatgctccctcctactcagaga 374 |||| ||||||||||||||||||| Sbjct: 532 aaaaagctccctcctactcagaga 555
>gb|AF218255.2|AF218255 Mus musculus equilibrative nucleoside transporter 1 gene, complete cds, alternatively spliced Length = 11873 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 371 gagaagaactggggtggggg 390 |||||||||||||||||||| Sbjct: 1542 gagaagaactggggtggggg 1561
>gb|AC139722.1| Homo sapiens BAC clone RP11-100N20 from 4, complete sequence Length = 116694 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 tccctcctcaggaattttctaatc 80 |||||||||| ||||||||||||| Sbjct: 84687 tccctcctcaagaattttctaatc 84664
>emb|CT573363.8| Mouse DNA sequence from clone RP23-443F11 on chromosome 17, complete sequence Length = 86313 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 agagaagaactggggtgggg 389 |||||||||||||||||||| Sbjct: 30519 agagaagaactggggtgggg 30538
>gb|AC154388.4| Mus musculus BAC clone RP23-14P7 from chromosome 14, complete sequence Length = 246800 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 tagaatgggatggagaacgg 340 |||||||||||||||||||| Sbjct: 137451 tagaatgggatggagaacgg 137432
>emb|CR761495.2| Xenopus tropicalis finished cDNA, clone TGas064l20 Length = 1864 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 ttctttgaacctcattggca 285 |||||||||||||||||||| Sbjct: 1807 ttctttgaacctcattggca 1826
>emb|CT030647.17| Mouse DNA sequence from clone RP23-379I9 on chromosome 14, complete sequence Length = 205598 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 tagaatgggatggagaacgg 340 |||||||||||||||||||| Sbjct: 2961 tagaatgggatggagaacgg 2942
>emb|AL928949.12| Mouse DNA sequence from clone RP23-226K16 on chromosome 2, complete sequence Length = 200500 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gatagaatgggatggagaac 338 |||||||||||||||||||| Sbjct: 6691 gatagaatgggatggagaac 6710
>emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chromosome 8, complete sequence Length = 183975 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 204 atggctggggtgatgtcacatcta 227 |||||||||||| ||||||||||| Sbjct: 156654 atggctggggtggtgtcacatcta 156631
>gb|AC164120.2| Mus musculus BAC clone RP24-289J17 from chromosome 14, complete sequence Length = 147050 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 441 ctggtgaagttgctttaactgctg 464 |||||||||| ||||||||||||| Sbjct: 88278 ctggtgaagtggctttaactgctg 88255
>emb|AL683809.7| Mouse DNA sequence from clone RP23-440B21 on chromosome X, complete sequence Length = 213187 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 gaatttgaaaatgctccctc 363 |||||||||||||||||||| Sbjct: 97333 gaatttgaaaatgctccctc 97314
>emb|AJ409369.1|ACA409369 Acianthus caudatus chloroplast tRNA-Leu gene for transfer RNA-Leu and trnL-F intergenic spacer Length = 761 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 aaaattggattgggagatac 498 |||||||||||||||||||| Sbjct: 561 aaaattggattgggagatac 542 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,675,763 Number of Sequences: 3902068 Number of extensions: 5675763 Number of successful extensions: 95357 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95094 Number of HSP's gapped (non-prelim): 249 length of query: 655 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 632 effective length of database: 17,143,297,704 effective search space: 10834564148928 effective search space used: 10834564148928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)