ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal35i22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TTC6_HUMAN (Q86TZ1) Tetratricopeptide repeat protein 6 (TPR repe... 31 2.1
2UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 30 4.7
3UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 30 4.7
4CD2A2_MOUSE (Q64364) Cyclin-dependent kinase inhibitor 2A, isofo... 29 6.2

>TTC6_HUMAN (Q86TZ1) Tetratricopeptide repeat protein 6 (TPR repeat protein 6)|
          Length = 520

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +3

Query: 45  NHRLSPFLK--NVFDLACYHNLEAHLHLLDGYQGRGKEFKLGGRDPALVNKAADFLVDEH 218
           +HR++ F +  N F  A    L+ +   LD Y GRG  +   G D A      DFL   H
Sbjct: 220 HHRINEFEEAVNFFTWA----LKINPCFLDAYVGRGNSYMEYGHDEATKQAQKDFLKALH 275

Query: 219 MVPPVWRQEFNKGLVRTEDGRWQ 287
           + P   +   + G      G++Q
Sbjct: 276 INPAYIKARISFGYNLQAQGKFQ 298



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>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +3

Query: 39  ALNHRLSPFLKNVFDLACYHNLEAHLHLLDGYQGR 143
           AL +R SP  +NVF+ A + NL+A ++ LD    R
Sbjct: 541 ALQNRASPETENVFNDAFWENLDAVVNALDNVTAR 575



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>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +3

Query: 39  ALNHRLSPFLKNVFDLACYHNLEAHLHLLDGYQGR 143
           AL +R SP  +NVF+ A + NL+A ++ LD    R
Sbjct: 541 ALQNRASPETENVFNDAFWENLDAVVNALDNVTAR 575



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>CD2A2_MOUSE (Q64364) Cyclin-dependent kinase inhibitor 2A, isoform 3 (p19ARF)|
          Length = 169

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = +2

Query: 173 PGARQQGGRLPRGRAHGAARV 235
           PGAR+  GRLP G A GAARV
Sbjct: 94  PGARRSAGRLP-GHAGGAARV 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,512,940
Number of Sequences: 219361
Number of extensions: 907588
Number of successful extensions: 3085
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3085
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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