ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal35h01 |
|---|---|
| Clone Library Name | barley_pub |
>SRCA_MOUSE (Q7TQ48) Sarcalumenin precursor| Length = 910 Score = 36.2 bits (82), Expect = 0.054 Identities = 21/61 (34%), Positives = 29/61 (47%) Frame = -2 Query: 207 APGANGLRLHYHGAATLTVLDQAPHGAVASANSRYPAWRRHLSHEGEKPSSTAPPSAIAG 28 APG L LHY L+Q P GA ++AN + LS+ + +APP + G Sbjct: 60 APGDKNLLLHYPDGREAESLEQTPAGAPSTANGQGSETEASLSN--TSAAESAPPGDVEG 117 Query: 27 P 25 P Sbjct: 118 P 118
>LEG3_MOUSE (P16110) Galectin-3 (Galactose-specific lectin 3) (Mac-2 antigen)| (IgE-binding protein) (35 kDa lectin) (Carbohydrate-binding protein 35) (CBP 35) (Laminin-binding protein) (Lectin L-29) (L-34 galactoside-binding lectin) Length = 263 Score = 31.2 bits (69), Expect = 1.7 Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Frame = -2 Query: 216 WGEAPGANGLRLHYHGAATLTVLD-QAPHGAVASANSRYPAWRRHLSHEGEKPSSTAPPS 40 WG PGA G Y GAA QAP GA YP ++ G+ APPS Sbjct: 25 WGNQPGAGG----YPGAAYPGAYPGQAPPGA-------YPGQAPPGAYPGQ-----APPS 68 Query: 39 AIAGPARPSS 10 A GP P + Sbjct: 69 AYPGPTAPGA 78
>FA62A_MOUSE (Q3U7R1) Protein FAM62A (Membrane bound C2 domain-containing protein)| Length = 1092 Score = 30.8 bits (68), Expect = 2.3 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = -2 Query: 153 VLDQAPHGAVASANSRYPAWRRHLSHEGEKPSSTAPPSAIAGPARPSSP 7 VL +A G + S +S A SH S P A+ GP P+SP Sbjct: 890 VLMRAQLGILVSQHSGVEAHSHSYSHSHSSSSLNDEPEALGGPTHPASP 938
>TRUB_MOOTA (Q2RJM2) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 305 Score = 29.6 bits (65), Expect = 5.0 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%) Frame = +3 Query: 75 HATDGVAMPGTGCLLMPPLRE------EPGRG-LSA*PRRGNASGGRWLLVPHPITR 224 H ++GVA+ G C +P LRE E G G L A R + G +LL PH + + Sbjct: 249 HVSNGVAIKGDVCRPLPSLREGDIVRLETGEGQLLALARVEPDTRGSFLLKPHKVLK 305
>NAC2_CHLRE (Q9LEM8) PsbD mRNA maturation factor Nac2, chloroplast precursor| Length = 1385 Score = 29.6 bits (65), Expect = 5.0 Identities = 29/85 (34%), Positives = 39/85 (45%) Frame = -2 Query: 255 PTLAVQLASIL**WGEAPGANGLRLHYHGAATLTVLDQAPHGAVASANSRYPAWRRHLSH 76 P LA+Q+A+ A GA R GA+T +D GA++ A+ A Sbjct: 832 PPLALQMAA-----RRATGAG--RRRRRGASTTASMD-GDDGALSVADGSSSA------D 877 Query: 75 EGEKPSSTAPPSAIAGPARPSSPQR 1 P+S A PSA AGP PS+ R Sbjct: 878 AAIDPASGASPSAAAGPPAPSARPR 902
>POXB_STRPN (Q54970) Pyruvate oxidase (EC 1.2.3.3) (Pyruvic oxidase) (POX)| Length = 591 Score = 29.3 bits (64), Expect = 6.6 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +3 Query: 57 WRASPLHATDGVAMPG 104 WR SPL AT G+A+PG Sbjct: 407 WRTSPLFATMGIALPG 422
>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)| (Obscurin-MLCK) (Obscurin-RhoGEF) Length = 7968 Score = 29.3 bits (64), Expect = 6.6 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -2 Query: 183 LHYHGAATLTVLDQAPHGAVASANSRYPAWRRHLSHEG 70 L YH A + HGA+A + R+PA RRHL G Sbjct: 6873 LFYHQAG-----ESPEHGALAPGSRRHPARRRHLLKGG 6905
>B2L12_HUMAN (Q9HB09) Bcl-2-related proline-rich protein (Bcl-2-like 12 protein)| Length = 334 Score = 29.3 bits (64), Expect = 6.6 Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 8/100 (8%) Frame = +3 Query: 36 WQREEPCWRASPLHATDGVAMPGTGCLLMPPLREEPGRGLSA*PRRGNASGGRWLLVPHP 215 W+R + WR G +M G+ L LRE+ R L+A RRG A+G P Sbjct: 65 WRRPQVEWRRRRWGPGPGASMAGSEEL---GLREDTLRVLAAFLRRGEAAGSPVPTPPRS 121 Query: 216 ITRGWRPAGRPRL-VILPCTV-------RAKQPCSKPTNP 311 + RL LPC++ + +PCS P P Sbjct: 122 PAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPCSLPIRP 161
>AMYD_THETU (P37730) Probable starch degradation products transport system| permease protein amyD Length = 292 Score = 29.3 bits (64), Expect = 6.6 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = -3 Query: 353 FFFFHCFVHTIDSTGIGWLGAWL 285 F F F D+T IGWLG WL Sbjct: 127 FIFVDVFQTISDATHIGWLGGWL 149
>UBP10_HUMAN (Q14694) Ubiquitin carboxyl-terminal hydrolase 10 (EC 3.1.2.15)| (Ubiquitin thioesterase 10) (Ubiquitin-specific-processing protease 10) (Deubiquitinating enzyme 10) Length = 798 Score = 29.3 bits (64), Expect = 6.6 Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 9/98 (9%) Frame = -2 Query: 312 RDWLAWSMAASPSLYTGESPTLAVQLASIL**WGEAPGANGLRLHYHGAATL--TVLDQA 139 RD L+ + A P + T + L V IL GE NG+ LH + L T + A Sbjct: 261 RDTLSRTAGAQPCVGTDTTENLGVANGQILESSGEGTATNGVELHTTESIDLDPTKPESA 320 Query: 138 --PHGAVASANSRYP-----AWRRHLSHEGEKPSSTAP 46 P SA+ P +W L H+ KPSS++P Sbjct: 321 SPPADGTGSASGTLPVSQPKSW-ASLFHD-SKPSSSSP 356
>MBR3_YEAST (P32488) Protein MBR3 (Increasing suppression factor 1) (Protein| ISF1) Length = 338 Score = 28.9 bits (63), Expect = 8.6 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 8/104 (7%) Frame = -2 Query: 294 SMAASPSLYTGESPTLAVQLASIL**WGE-----APGANGLRLHYHGAATLTVLDQAPHG 130 S AA PS Y ++L S G+ PG +G HYH T + L + Sbjct: 212 SSAAYPSSYLSNEKNNRLKLIS----HGKISSNNVPGHSGNLNHYHRERTPSNLRRESFS 267 Query: 129 AVASANSRYPAWRRHLSHEG---EKPSSTAPPSAIAGPARPSSP 7 +++ +S P R+ S+ + PS+++ +++A SSP Sbjct: 268 LLSNGSSSSPLQTRNNSYSNSLVKSPSNSSLNTSVASSNEESSP 311
>E75BC_DROME (P17671) Ecdysone-induced protein 75B isoforms C/D (E75-A)| Length = 1199 Score = 28.9 bits (63), Expect = 8.6 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -2 Query: 135 HGAVASANS--RYPAWRRHLSHEGEKPSSTAPPSAIAGPARPSSP 7 H VA+AN+ RYP ++ S+ PPSA A PA SSP Sbjct: 1136 HALVAAANAVQRYPTLSADVTVTA---SNGGPPSAAASPAPSSSP 1177
>E75BA_DROME (P17672) Ecdysone-induced protein 75B isoform A (E75-B)| Length = 1355 Score = 28.9 bits (63), Expect = 8.6 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -2 Query: 135 HGAVASANS--RYPAWRRHLSHEGEKPSSTAPPSAIAGPARPSSP 7 H VA+AN+ RYP ++ S+ PPSA A PA SSP Sbjct: 1292 HALVAAANAVQRYPTLSADVTVTA---SNGGPPSAAASPAPSSSP 1333
>TLE1_BRARE (O13168) Groucho 1 protein (Fragment)| Length = 535 Score = 28.9 bits (63), Expect = 8.6 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Frame = -2 Query: 174 HGAATLTVLDQAPH-------GAVASANSRYPAWRRHLSHEGEKPSSTAPPSAIAGPARP 16 +G ++ D PH ++ S PA+ H+S +G+ PP A+ GP P Sbjct: 178 YGRTSMPGFDPHPHMRAPVLPASLTSIPGGKPAYSFHVSADGQMQPVPFPPDALIGPGIP 237
>ZCHC4_MOUSE (Q8BKW4) Zinc finger CCHC domain-containing protein 4| Length = 512 Score = 28.9 bits (63), Expect = 8.6 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -1 Query: 343 FIASCTQLILPGLVGLEHGCFALTVHGRITNLGRPAG-LHPL 221 F SC QL+LP EHG L+ + LGRP+ L+PL Sbjct: 123 FCQSCQQLLLPA-DWREHGTHQLSADISVAQLGRPSQLLYPL 163
>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 28.9 bits (63), Expect = 8.6 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = -2 Query: 138 PHGAVASANSRYPAWRRHLSHEGEKPSSTAPPSAIAGPARPSSPQR 1 P + S PA ++ S E P PP +A PARP+ PQR Sbjct: 1078 PPSSQGSPVDTQPAAQKDSSQTLE-PKRPPPPRPVAPPARPAPPQR 1122
>E75BB_DROME (P13055) Ecdysone-induced protein 75B isoform B (E75-C)| Length = 1412 Score = 28.9 bits (63), Expect = 8.6 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -2 Query: 135 HGAVASANS--RYPAWRRHLSHEGEKPSSTAPPSAIAGPARPSSP 7 H VA+AN+ RYP ++ S+ PPSA A PA SSP Sbjct: 1349 HALVAAANAVQRYPTLSADVTVTA---SNGGPPSAAASPAPSSSP 1390 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,230,992 Number of Sequences: 219361 Number of extensions: 1608281 Number of successful extensions: 5592 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5323 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5583 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
