| Clone Name | baal34p17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105951.1| Zea mays PCO080381 mRNA sequence Length = 826 Score = 571 bits (288), Expect = e-159 Identities = 387/420 (92%) Strand = Plus / Plus Query: 76 gatccggttcgtgctgctggtgaacaagcaggggcagacgcggctggcgcagtactacga 135 |||||||||||||||| | || ||||||||||| |||||||||||||||||||||||||| Sbjct: 124 gatccggttcgtgctgttcgtcaacaagcagggccagacgcggctggcgcagtactacga 183 Query: 136 gcacctctccctcgacgagcgccgcgccctcgagggcgagatcgtccgcaagtgcctcgc 195 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 184 gcacctctccctcgacgagcgacgggccctcgagggcgagatcgtccgcaagtgcctcgc 243 Query: 196 ccgcaccgaccagcagtgctctttcgtggagcaccggaactacaaggtcgtctacaggcg 255 |||||| ||||||||||| || || |||||||||||||||||||||||||| |||||||| Sbjct: 244 ccgcactgaccagcagtgttcgtttgtggagcaccggaactacaaggtcgtttacaggcg 303 Query: 256 ctacgcctccctcttcttcctcgtcggcgtggacaacgatgagaatgagttagccatcct 315 |||||||||||| ||||||||||||||||| |||| |||||||||||||||||| ||||| Sbjct: 304 ctacgcctcccttttcttcctcgtcggcgtcgacagcgatgagaatgagttagctatcct 363 Query: 316 tgaattcatacatcttctcgtggaaaccatggaccgccactttggcaacgtgtgcgagct 375 |||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||||||||| Sbjct: 364 tgaattcatacatcttctggtggaaactatggatcgccacttcggcaatgtgtgcgagct 423 Query: 376 cgacatcatgttccatctggaaaaagtgcacttcatgctcgaagagatggtgatgaacgg 435 ||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||||| || Sbjct: 424 cgatatcatgttccatctggagaaagtgcacttcatgttggaagagatggtgatgaatgg 483 Query: 436 ttgcatcgtggagacgagcaaacagaacatattggcgcccatccagcttatggagaaaac 495 |||||| |||||||| || ||||||||||| ||||| || || || |||||||||||||| Sbjct: 484 ttgcattgtggagacaagtaaacagaacatcttggcaccaatacaacttatggagaaaac 543
>ref|NM_196093.1| Oryza sativa (japonica cultivar-group) putative clathrin assembly protein (OSJNBa0083M08.3), mRNA Length = 622 Score = 551 bits (278), Expect = e-153 Identities = 389/426 (91%) Strand = Plus / Plus Query: 70 gatggggatccggttcgtgctgctggtgaacaagcaggggcagacgcggctggcgcagta 129 ||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| || Sbjct: 13 gatggggatccggttcgtggtgatggtgaacaagcaggggcagacgcgggtggcgcaata 72 Query: 130 ctacgagcacctctccctcgacgagcgccgcgccctcgagggcgagatcgtccgcaagtg 189 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73 ctacgagcacctctccgtcgacgagcgccgcgccctcgagggcgagatcgtccgcaagtg 132 Query: 190 cctcgcccgcaccgaccagcagtgctctttcgtggagcaccggaactacaaggtcgtcta 249 |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| || || Sbjct: 133 cctcgcccgcaccgaccaccagtgttctttcgtggagcaccgcaactacaaggtggtgta 192 Query: 250 caggcgctacgcctccctcttcttcctcgtcggcgtggacaacgatgagaatgagttagc 309 | ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct: 193 ccggcgctacgcctccctcttcttcctagtcggcgtcgacaacgatgagaatgagttagc 252 Query: 310 catccttgaattcatacatcttctcgtggaaaccatggaccgccactttggcaacgtgtg 369 |||||||||||||| |||||| | || ||||| |||||||| ||||||||||| ||||| Sbjct: 253 tatccttgaattcattcatcttttggttgaaactatggaccgtcactttggcaatgtgtg 312 Query: 370 cgagctcgacatcatgttccatctggaaaaagtgcacttcatgctcgaagagatggtgat 429 ||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||| Sbjct: 313 tgagctcgacattatgttccatctggagaaggtgcacttcatgctggaagagatggtgat 372 Query: 430 gaacggttgcatcgtggagacgagcaaacagaacatattggcgcccatccagcttatgga 489 ||| |||||||| || || || || ||||||||||| ||||| || ||||| || ||||| Sbjct: 373 gaatggttgcattgtcgaaactagtaaacagaacatcttggcaccaatccacctgatgga 432 Query: 490 gaaaac 495 |||||| Sbjct: 433 gaaaac 438
>dbj|AK120131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026P11, full insert sequence Length = 761 Score = 543 bits (274), Expect = e-151 Identities = 388/426 (91%) Strand = Plus / Plus Query: 70 gatggggatccggttcgtgctgctggtgaacaagcaggggcagacgcggctggcgcagta 129 |||||||| |||||||||| || |||||||||||||||||||||||||| ||||||| || Sbjct: 52 gatggggacccggttcgtggtgatggtgaacaagcaggggcagacgcgggtggcgcaata 111 Query: 130 ctacgagcacctctccctcgacgagcgccgcgccctcgagggcgagatcgtccgcaagtg 189 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 112 ctacgagcacctctccgtcgacgagcgccgcgccctcgagggcgagatcgtccgcaagtg 171 Query: 190 cctcgcccgcaccgaccagcagtgctctttcgtggagcaccggaactacaaggtcgtcta 249 |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| || || Sbjct: 172 cctcgcccgcaccgaccaccagtgttctttcgtggagcaccgcaactacaaggtggtgta 231 Query: 250 caggcgctacgcctccctcttcttcctcgtcggcgtggacaacgatgagaatgagttagc 309 | ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct: 232 ccggcgctacgcctccctcttcttcctagtcggcgtcgacaacgatgagaatgagttagc 291 Query: 310 catccttgaattcatacatcttctcgtggaaaccatggaccgccactttggcaacgtgtg 369 |||||||||||||| |||||| | || ||||| |||||||| ||||||||||| ||||| Sbjct: 292 tatccttgaattcattcatcttttggttgaaactatggaccgtcactttggcaatgtgtg 351 Query: 370 cgagctcgacatcatgttccatctggaaaaagtgcacttcatgctcgaagagatggtgat 429 ||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||| Sbjct: 352 tgagctcgacattatgttccatctggagaaggtgcacttcatgctggaagagatggtgat 411 Query: 430 gaacggttgcatcgtggagacgagcaaacagaacatattggcgcccatccagcttatgga 489 ||| |||||||| || || || || ||||||||||| ||||| || ||||| || ||||| Sbjct: 412 gaatggttgcattgtcgaaactagtaaacagaacatcttggcaccaatccacctgatgga 471 Query: 490 gaaaac 495 |||||| Sbjct: 472 gaaaac 477
>ref|XM_482218.1| Oryza sativa (japonica cultivar-group), mRNA Length = 432 Score = 525 bits (265), Expect = e-146 Identities = 385/425 (90%) Strand = Plus / Plus Query: 71 atggggatccggttcgtgctgctggtgaacaagcaggggcagacgcggctggcgcagtac 130 ||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||| Sbjct: 1 atggggatccggttcgtgctgttcgtgaacaagcaggggcagacgcggctggcccagtac 60 Query: 131 tacgagcacctctccctcgacgagcgccgcgccctcgagggcgagatcgtccgcaagtgc 190 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tacgagcacctctccatcgacgagcgccgcgccctcgagggcgagatcgtccgcaagtgc 120 Query: 191 ctcgcccgcaccgaccagcagtgctctttcgtggagcaccggaactacaaggtcgtctac 250 ||||||||||||||||||||||| || |||||||||||||||||||||||||| || ||| Sbjct: 121 ctcgcccgcaccgaccagcagtgttcgttcgtggagcaccggaactacaaggtggtgtac 180 Query: 251 aggcgctacgcctccctcttcttcctcgtcggcgtggacaacgatgagaatgagttagcc 310 |||| ||||| ||||||||||||||||||||||| |||||||| ||||||||| |||| Sbjct: 181 cggcggtacgcttccctcttcttcctcgtcggcgtcgacaacgacgagaatgagctagct 240 Query: 311 atccttgaattcatacatcttctcgtggaaaccatggaccgccactttggcaacgtgtgc 370 || || |||||||| |||||| | |||||||| |||||||||||||| || || ||||| Sbjct: 241 attctcgaattcattcatctttttgtggaaactatggaccgccacttcggaaatgtgtgt 300 Query: 371 gagctcgacatcatgttccatctggaaaaagtgcacttcatgctcgaagagatggtgatg 430 || |||||||||||||||||||| || || |||||||||||||| ||||||||||||||| Sbjct: 301 gaactcgacatcatgttccatctagagaaggtgcacttcatgctggaagagatggtgatg 360 Query: 431 aacggttgcatcgtggagacgagcaaacagaacatattggcgcccatccagcttatggag 490 || || ||||| || ||||| || ||||||||||| || || || ||||||||||||||| Sbjct: 361 aatggctgcatagtagagacaagtaaacagaacatcttagcaccaatccagcttatggag 420 Query: 491 aaaac 495 ||||| Sbjct: 421 aaaac 425
>gb|BT017687.1| Zea mays clone EL01N0444B12.c mRNA sequence Length = 566 Score = 505 bits (255), Expect = e-140 Identities = 348/379 (91%) Strand = Plus / Plus Query: 117 ggctggcgcagtactacgagcacctctccctcgacgagcgccgcgccctcgagggcgaga 176 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct: 9 ggctggcgcagtactacgagcacctctccctcgacgagcgacgggccctcgagggcgaga 68 Query: 177 tcgtccgcaagtgcctcgcccgcaccgaccagcagtgctctttcgtggagcaccggaact 236 ||||||||||||||||||||||||| ||||||||||| || || |||||||||||||||| Sbjct: 69 tcgtccgcaagtgcctcgcccgcactgaccagcagtgttcgtttgtggagcaccggaact 128 Query: 237 acaaggtcgtctacaggcgctacgcctccctcttcttcctcgtcggcgtggacaacgatg 296 |||||||||| |||||||||||||||||||| |||||||| |||||||| |||| ||||| Sbjct: 129 acaaggtcgtttacaggcgctacgcctcccttttcttccttgtcggcgtcgacagcgatg 188 Query: 297 agaatgagttagccatccttgaattcatacatcttctcgtggaaaccatggaccgccact 356 ||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct: 189 agaatgagttagctatccttgaattcatacatcttctggtggaaactatggatcgccact 248 Query: 357 ttggcaacgtgtgcgagctcgacatcatgttccatctggaaaaagtgcacttcatgctcg 416 | ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| | | Sbjct: 249 tcggcaatgtgtgcgagctcgatatcatgttccatctggagaaagtgcacttcatgttgg 308 Query: 417 aagagatggtgatgaacggttgcatcgtggagacgagcaaacagaacatattggcgccca 476 |||||||||||||||| |||||||| |||||||| || |||||||| || ||||| || | Sbjct: 309 aagagatggtgatgaatggttgcattgtggagacaagtaaacagaatatcttggcaccaa 368 Query: 477 tccagcttatggagaaaac 495 | || |||||||||||||| Sbjct: 369 tacaacttatggagaaaac 387
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 250 bits (126), Expect = 5e-63 Identities = 138/142 (97%) Strand = Plus / Plus Query: 70 gatggggatccggttcgtgctgctggtgaacaagcaggggcagacgcggctggcgcagta 129 |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| Sbjct: 18751382 gatggggatccggttcgtgctgttcgtgaacaagcaggggcagacgcggctggcccagta 18751441 Query: 130 ctacgagcacctctccctcgacgagcgccgcgccctcgagggcgagatcgtccgcaagtg 189 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18751442 ctacgagcacctctccatcgacgagcgccgcgccctcgagggcgagatcgtccgcaagtg 18751501 Query: 190 cctcgcccgcaccgaccagcag 211 |||||||||||||||||||||| Sbjct: 18751502 cctcgcccgcaccgaccagcag 18751523 Score = 131 bits (66), Expect = 3e-27 Identities = 108/122 (88%) Strand = Plus / Plus Query: 374 ctcgacatcatgttccatctggaaaaagtgcacttcatgctcgaagagatggtgatgaac 433 |||||||||||||||||||| || || |||||||||||||| ||||||||||||||||| Sbjct: 18752767 ctcgacatcatgttccatctagagaaggtgcacttcatgctggaagagatggtgatgaat 18752826 Query: 434 ggttgcatcgtggagacgagcaaacagaacatattggcgcccatccagcttatggagaaa 493 || ||||| || ||||| || ||||||||||| || || || |||||||||||||||||| Sbjct: 18752827 ggctgcatagtagagacaagtaaacagaacatcttagcaccaatccagcttatggagaaa 18752886 Query: 494 ac 495 || Sbjct: 18752887 ac 18752888 Score = 117 bits (59), Expect = 5e-23 Identities = 83/91 (91%) Strand = Plus / Plus Query: 208 gcagtgctctttcgtggagcaccggaactacaaggtcgtctacaggcgctacgcctccct 267 |||||| || |||||||||||||||||||||||||| || ||| |||| ||||| ||||| Sbjct: 18772712 gcagtgttcgttcgtggagcaccggaactacaaggtggtgtaccggcggtacgcttccct 18772771 Query: 268 cttcttcctcgtcggcgtggacaacgatgag 298 |||||||||||||||||| |||||||||||| Sbjct: 18772772 cttcttcctcgtcggcgtcgacaacgatgag 18772802 Score = 109 bits (55), Expect = 1e-20 Identities = 79/87 (90%) Strand = Plus / Plus Query: 208 gcagtgctctttcgtggagcaccggaactacaaggtcgtctacaggcgctacgcctccct 267 |||||| || |||||||||||||||||||||||||| || ||| |||| ||||| ||||| Sbjct: 18751735 gcagtgttcgttcgtggagcaccggaactacaaggtggtgtaccggcggtacgcttccct 18751794 Query: 268 cttcttcctcgtcggcgtggacaacga 294 |||||||||||||||||| |||||||| Sbjct: 18751795 cttcttcctcgtcggcgtcgacaacga 18751821 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 297 agaatgagttagccatccttgaattcatacatcttctcgtggaaaccatggaccgccact 356 |||||||| |||| || || |||||||| |||||| | |||||||| ||||||||||||| Sbjct: 18752591 agaatgagctagctattctcgaattcattcatctttttgtggaaactatggaccgccact 18752650 Query: 357 t 357 | Sbjct: 18752651 t 18752651
>dbj|AP003880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1123_G08 Length = 146944 Score = 250 bits (126), Expect = 5e-63 Identities = 138/142 (97%) Strand = Plus / Plus Query: 70 gatggggatccggttcgtgctgctggtgaacaagcaggggcagacgcggctggcgcagta 129 |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| Sbjct: 54831 gatggggatccggttcgtgctgttcgtgaacaagcaggggcagacgcggctggcccagta 54890 Query: 130 ctacgagcacctctccctcgacgagcgccgcgccctcgagggcgagatcgtccgcaagtg 189 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 54891 ctacgagcacctctccatcgacgagcgccgcgccctcgagggcgagatcgtccgcaagtg 54950 Query: 190 cctcgcccgcaccgaccagcag 211 |||||||||||||||||||||| Sbjct: 54951 cctcgcccgcaccgaccagcag 54972 Score = 131 bits (66), Expect = 3e-27 Identities = 108/122 (88%) Strand = Plus / Plus Query: 374 ctcgacatcatgttccatctggaaaaagtgcacttcatgctcgaagagatggtgatgaac 433 |||||||||||||||||||| || || |||||||||||||| ||||||||||||||||| Sbjct: 56216 ctcgacatcatgttccatctagagaaggtgcacttcatgctggaagagatggtgatgaat 56275 Query: 434 ggttgcatcgtggagacgagcaaacagaacatattggcgcccatccagcttatggagaaa 493 || ||||| || ||||| || ||||||||||| || || || |||||||||||||||||| Sbjct: 56276 ggctgcatagtagagacaagtaaacagaacatcttagcaccaatccagcttatggagaaa 56335 Query: 494 ac 495 || Sbjct: 56336 ac 56337 Score = 117 bits (59), Expect = 5e-23 Identities = 83/91 (91%) Strand = Plus / Plus Query: 208 gcagtgctctttcgtggagcaccggaactacaaggtcgtctacaggcgctacgcctccct 267 |||||| || |||||||||||||||||||||||||| || ||| |||| ||||| ||||| Sbjct: 76161 gcagtgttcgttcgtggagcaccggaactacaaggtggtgtaccggcggtacgcttccct 76220 Query: 268 cttcttcctcgtcggcgtggacaacgatgag 298 |||||||||||||||||| |||||||||||| Sbjct: 76221 cttcttcctcgtcggcgtcgacaacgatgag 76251 Score = 109 bits (55), Expect = 1e-20 Identities = 79/87 (90%) Strand = Plus / Plus Query: 208 gcagtgctctttcgtggagcaccggaactacaaggtcgtctacaggcgctacgcctccct 267 |||||| || |||||||||||||||||||||||||| || ||| |||| ||||| ||||| Sbjct: 55184 gcagtgttcgttcgtggagcaccggaactacaaggtggtgtaccggcggtacgcttccct 55243 Query: 268 cttcttcctcgtcggcgtggacaacga 294 |||||||||||||||||| |||||||| Sbjct: 55244 cttcttcctcgtcggcgtcgacaacga 55270 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 297 agaatgagttagccatccttgaattcatacatcttctcgtggaaaccatggaccgccact 356 |||||||| |||| || || |||||||| |||||| | |||||||| ||||||||||||| Sbjct: 56040 agaatgagctagctattctcgaattcattcatctttttgtggaaactatggaccgccact 56099 Query: 357 t 357 | Sbjct: 56100 t 56100
>gb|AC096691.6| Oryza sativa chromosome 10 BAC OSJNBa0083M08 genomic sequence, complete sequence Length = 106110 Score = 234 bits (118), Expect = 3e-58 Identities = 133/138 (96%) Strand = Plus / Plus Query: 70 gatggggatccggttcgtgctgctggtgaacaagcaggggcagacgcggctggcgcagta 129 ||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| || Sbjct: 37949 gatggggatccggttcgtggtgatggtgaacaagcaggggcagacgcgggtggcgcaata 38008 Query: 130 ctacgagcacctctccctcgacgagcgccgcgccctcgagggcgagatcgtccgcaagtg 189 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38009 ctacgagcacctctccgtcgacgagcgccgcgccctcgagggcgagatcgtccgcaagtg 38068 Query: 190 cctcgcccgcaccgacca 207 |||||||||||||||||| Sbjct: 38069 cctcgcccgcaccgacca 38086 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Plus Query: 371 gagctcgacatcatgttccatctggaaaaagtgcacttcatgctcgaagagatggtgatg 430 ||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 40413 gagctcgacattatgttccatctggagaaggtgcacttcatgctggaagagatggtgatg 40472 Query: 431 aacggttgcatcgtggagacgagcaaacagaacatattggcgcccatccagcttatggag 490 || |||||||| || || || || ||||||||||| ||||| || ||||| || |||||| Sbjct: 40473 aatggttgcattgtcgaaactagtaaacagaacatcttggcaccaatccacctgatggag 40532 Query: 491 aaaac 495 ||||| Sbjct: 40533 aaaac 40537 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Plus Query: 208 gcagtgctctttcgtggagcaccggaactacaaggtcgtctacaggcgctacgcctccct 267 |||||| ||||||||||||||||| ||||||||||| || ||| |||||||||||||||| Sbjct: 38221 gcagtgttctttcgtggagcaccgcaactacaaggtggtgtaccggcgctacgcctccct 38280 Query: 268 cttcttcctcgtcggcgtggacaacgatgag 298 ||||||||| |||||||| |||||||||||| Sbjct: 38281 cttcttcctagtcggcgtcgacaacgatgag 38311 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/67 (89%) Strand = Plus / Plus Query: 297 agaatgagttagccatccttgaattcatacatcttctcgtggaaaccatggaccgccact 356 ||||||||||||| |||||||||||||| |||||| | || ||||| |||||||| |||| Sbjct: 40241 agaatgagttagctatccttgaattcattcatcttttggttgaaactatggaccgtcact 40300 Query: 357 ttggcaa 363 ||||||| Sbjct: 40301 ttggcaa 40307
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 234 bits (118), Expect = 3e-58 Identities = 133/138 (96%) Strand = Plus / Minus Query: 70 gatggggatccggttcgtgctgctggtgaacaagcaggggcagacgcggctggcgcagta 129 ||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| || Sbjct: 11030287 gatggggatccggttcgtggtgatggtgaacaagcaggggcagacgcgggtggcgcaata 11030228 Query: 130 ctacgagcacctctccctcgacgagcgccgcgccctcgagggcgagatcgtccgcaagtg 189 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11030227 ctacgagcacctctccgtcgacgagcgccgcgccctcgagggcgagatcgtccgcaagtg 11030168 Query: 190 cctcgcccgcaccgacca 207 |||||||||||||||||| Sbjct: 11030167 cctcgcccgcaccgacca 11030150 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Minus Query: 371 gagctcgacatcatgttccatctggaaaaagtgcacttcatgctcgaagagatggtgatg 430 ||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 11027823 gagctcgacattatgttccatctggagaaggtgcacttcatgctggaagagatggtgatg 11027764 Query: 431 aacggttgcatcgtggagacgagcaaacagaacatattggcgcccatccagcttatggag 490 || |||||||| || || || || ||||||||||| ||||| || ||||| || |||||| Sbjct: 11027763 aatggttgcattgtcgaaactagtaaacagaacatcttggcaccaatccacctgatggag 11027704 Query: 491 aaaac 495 ||||| Sbjct: 11027703 aaaac 11027699 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Minus Query: 208 gcagtgctctttcgtggagcaccggaactacaaggtcgtctacaggcgctacgcctccct 267 |||||| ||||||||||||||||| ||||||||||| || ||| |||||||||||||||| Sbjct: 11030015 gcagtgttctttcgtggagcaccgcaactacaaggtggtgtaccggcgctacgcctccct 11029956 Query: 268 cttcttcctcgtcggcgtggacaacgatgag 298 ||||||||| |||||||| |||||||||||| Sbjct: 11029955 cttcttcctagtcggcgtcgacaacgatgag 11029925 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 297 agaatgagttagccatccttgaattcatacatcttctcgtggaaaccatggaccgccact 356 ||||||||||||| |||||||||||||| |||||| | || ||||| |||||||| |||| Sbjct: 11027995 agaatgagttagctatccttgaattcattcatcttttggttgaaactatggaccgtcact 11027936 Query: 357 ttggcaa 363 ||||||| Sbjct: 11027935 ttggcaa 11027929
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 234 bits (118), Expect = 3e-58 Identities = 133/138 (96%) Strand = Plus / Minus Query: 70 gatggggatccggttcgtgctgctggtgaacaagcaggggcagacgcggctggcgcagta 129 ||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| || Sbjct: 11036727 gatggggatccggttcgtggtgatggtgaacaagcaggggcagacgcgggtggcgcaata 11036668 Query: 130 ctacgagcacctctccctcgacgagcgccgcgccctcgagggcgagatcgtccgcaagtg 189 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11036667 ctacgagcacctctccgtcgacgagcgccgcgccctcgagggcgagatcgtccgcaagtg 11036608 Query: 190 cctcgcccgcaccgacca 207 |||||||||||||||||| Sbjct: 11036607 cctcgcccgcaccgacca 11036590 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Minus Query: 371 gagctcgacatcatgttccatctggaaaaagtgcacttcatgctcgaagagatggtgatg 430 ||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 11034263 gagctcgacattatgttccatctggagaaggtgcacttcatgctggaagagatggtgatg 11034204 Query: 431 aacggttgcatcgtggagacgagcaaacagaacatattggcgcccatccagcttatggag 490 || |||||||| || || || || ||||||||||| ||||| || ||||| || |||||| Sbjct: 11034203 aatggttgcattgtcgaaactagtaaacagaacatcttggcaccaatccacctgatggag 11034144 Query: 491 aaaac 495 ||||| Sbjct: 11034143 aaaac 11034139 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Minus Query: 208 gcagtgctctttcgtggagcaccggaactacaaggtcgtctacaggcgctacgcctccct 267 |||||| ||||||||||||||||| ||||||||||| || ||| |||||||||||||||| Sbjct: 11036455 gcagtgttctttcgtggagcaccgcaactacaaggtggtgtaccggcgctacgcctccct 11036396 Query: 268 cttcttcctcgtcggcgtggacaacgatgag 298 ||||||||| |||||||| |||||||||||| Sbjct: 11036395 cttcttcctagtcggcgtcgacaacgatgag 11036365 Score = 77.8 bits (39), Expect = 4e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 297 agaatgagttagccatccttgaattcatacatcttctcgtggaaaccatggaccgccact 356 ||||||||||||| |||||||||||||| |||||| | || ||||| |||||||| |||| Sbjct: 11034435 agaatgagttagctatccttgaattcattcatcttttggttgaaactatggaccgtcact 11034376 Query: 357 ttggcaa 363 ||||||| Sbjct: 11034375 ttggcaa 11034369
>ref|NM_127537.2| Arabidopsis thaliana unknown protein AT2G19790 mRNA, complete cds Length = 631 Score = 153 bits (77), Expect = 9e-34 Identities = 293/365 (80%) Strand = Plus / Plus Query: 93 tggtgaacaagcaggggcagacgcggctggcgcagtactacgagcacctctccctcgacg 152 ||||||||||||| || ||||| || || || ||||||||||| ||| | ||||| | Sbjct: 94 tggtgaacaagcaaggccagactcgtcttgctcagtactacgaatggctcactctcgagg 153 Query: 153 agcgccgcgccctcgagggcgagatcgtccgcaagtgcctcgcccgcaccgaccagcagt 212 | || ||||| ||||| ||||| |||||||| || |||||||| |||| |||||| |||| Sbjct: 154 aacgtcgcgctctcgaaggcgaaatcgtccgtaaatgcctcgctcgcaacgaccaacagt 213 Query: 213 gctctttcgtggagcaccggaactacaaggtcgtctacaggcgctacgcctccctcttct 272 | || || || ||||| || ||||||||| | ||||||||||| ||||| || ||||||| Sbjct: 214 gttcgtttgtcgagcatcgcaactacaagatagtctacaggcgttacgcatctctcttct 273 Query: 273 tcctcgtcggcgtggacaacgatgagaatgagttagccatccttgaattcatacatcttc 332 || | || || || || ||||||| || ||| | || || || || |||||||||||| Sbjct: 274 tcatggttggggttgatgacgatgaaaacgagctggcgattctagagttcatacatcttt 333 Query: 333 tcgtggaaaccatggaccgccactttggcaacgtgtgcgagctcgacatcatgttccatc 392 | || || || |||||| || ||||| || ||||| ||||| ||||| |||||||||| Sbjct: 334 tggtcgagacaatggacaagcattttggaaatgtgtgtgagctagacataatgttccatc 393 Query: 393 tggaaaaagtgcacttcatgctcgaagagatggtgatgaacggttgcatcgtggagacga 452 |||| |||| || |||||||| ||||| ||||||||||| |||||||| |||||||| | Sbjct: 394 tggagaaagctcatttcatgctggaagaaatggtgatgaatggttgcattgtggagacaa 453 Query: 453 gcaaa 457 ||||| Sbjct: 454 gcaaa 458
>gb|AY059143.1| Arabidopsis thaliana putative clathrin assembly protein (At2g19790) mRNA, complete cds Length = 463 Score = 153 bits (77), Expect = 9e-34 Identities = 293/365 (80%) Strand = Plus / Plus Query: 93 tggtgaacaagcaggggcagacgcggctggcgcagtactacgagcacctctccctcgacg 152 ||||||||||||| || ||||| || || || ||||||||||| ||| | ||||| | Sbjct: 23 tggtgaacaagcaaggccagactcgtcttgctcagtactacgaatggctcactctcgagg 82 Query: 153 agcgccgcgccctcgagggcgagatcgtccgcaagtgcctcgcccgcaccgaccagcagt 212 | || ||||| ||||| ||||| |||||||| || |||||||| |||| |||||| |||| Sbjct: 83 aacgtcgcgctctcgaaggcgaaatcgtccgtaaatgcctcgctcgcaacgaccaacagt 142 Query: 213 gctctttcgtggagcaccggaactacaaggtcgtctacaggcgctacgcctccctcttct 272 | || || || ||||| || ||||||||| | ||||||||||| ||||| || ||||||| Sbjct: 143 gttcgtttgtcgagcatcgcaactacaagatagtctacaggcgttacgcatctctcttct 202 Query: 273 tcctcgtcggcgtggacaacgatgagaatgagttagccatccttgaattcatacatcttc 332 || | || || || || ||||||| || ||| | || || || || |||||||||||| Sbjct: 203 tcatggttggggttgatgacgatgaaaacgagctggcgattctagagttcatacatcttt 262 Query: 333 tcgtggaaaccatggaccgccactttggcaacgtgtgcgagctcgacatcatgttccatc 392 | || || || |||||| || ||||| || ||||| ||||| ||||| |||||||||| Sbjct: 263 tggtcgagacaatggacaagcattttggaaatgtgtgtgagctagacataatgttccatc 322 Query: 393 tggaaaaagtgcacttcatgctcgaagagatggtgatgaacggttgcatcgtggagacga 452 |||| |||| || |||||||| ||||| ||||||||||| |||||||| |||||||| | Sbjct: 323 tggagaaagctcatttcatgctggaagaaatggtgatgaatggttgcattgtggagacaa 382 Query: 453 gcaaa 457 ||||| Sbjct: 383 gcaaa 387
>gb|AF370185.1| Arabidopsis thaliana putative clathrin assembly protein (At2g19790) mRNA, complete cds Length = 645 Score = 153 bits (77), Expect = 9e-34 Identities = 293/365 (80%) Strand = Plus / Plus Query: 93 tggtgaacaagcaggggcagacgcggctggcgcagtactacgagcacctctccctcgacg 152 ||||||||||||| || ||||| || || || ||||||||||| ||| | ||||| | Sbjct: 92 tggtgaacaagcaaggccagactcgtcttgctcagtactacgaatggctcactctcgagg 151 Query: 153 agcgccgcgccctcgagggcgagatcgtccgcaagtgcctcgcccgcaccgaccagcagt 212 | || ||||| ||||| ||||| |||||||| || |||||||| |||| |||||| |||| Sbjct: 152 aacgtcgcgctctcgaaggcgaaatcgtccgtaaatgcctcgctcgcaacgaccaacagt 211 Query: 213 gctctttcgtggagcaccggaactacaaggtcgtctacaggcgctacgcctccctcttct 272 | || || || ||||| || ||||||||| | ||||||||||| ||||| || ||||||| Sbjct: 212 gttcgtttgtcgagcatcgcaactacaagatagtctacaggcgttacgcatctctcttct 271 Query: 273 tcctcgtcggcgtggacaacgatgagaatgagttagccatccttgaattcatacatcttc 332 || | || || || || ||||||| || ||| | || || || || |||||||||||| Sbjct: 272 tcatggttggggttgatgacgatgaaaacgagctggcgattctagagttcatacatcttt 331 Query: 333 tcgtggaaaccatggaccgccactttggcaacgtgtgcgagctcgacatcatgttccatc 392 | || || || |||||| || ||||| || ||||| ||||| ||||| |||||||||| Sbjct: 332 tggtcgagacaatggacaagcattttggaaatgtgtgtgagctagacataatgttccatc 391 Query: 393 tggaaaaagtgcacttcatgctcgaagagatggtgatgaacggttgcatcgtggagacga 452 |||| |||| || |||||||| ||||| ||||||||||| |||||||| |||||||| | Sbjct: 392 tggagaaagctcatttcatgctggaagaaatggtgatgaatggttgcattgtggagacaa 451 Query: 453 gcaaa 457 ||||| Sbjct: 452 gcaaa 456
>gb|AY088273.1| Arabidopsis thaliana clone 5064 mRNA, complete sequence Length = 629 Score = 153 bits (77), Expect = 9e-34 Identities = 293/365 (80%) Strand = Plus / Plus Query: 93 tggtgaacaagcaggggcagacgcggctggcgcagtactacgagcacctctccctcgacg 152 ||||||||||||| || ||||| || || || ||||||||||| ||| | ||||| | Sbjct: 94 tggtgaacaagcaaggccagactcgtcttgctcagtactacgaatggctcactctcgagg 153 Query: 153 agcgccgcgccctcgagggcgagatcgtccgcaagtgcctcgcccgcaccgaccagcagt 212 | || ||||| ||||| ||||| |||||||| || |||||||| |||| |||||| |||| Sbjct: 154 aacgtcgcgctctcgaaggcgaaatcgtccgtaaatgcctcgctcgcaacgaccaacagt 213 Query: 213 gctctttcgtggagcaccggaactacaaggtcgtctacaggcgctacgcctccctcttct 272 | || || || ||||| || ||||||||| | ||||||||||| ||||| || ||||||| Sbjct: 214 gttcgtttgtcgagcatcgcaactacaagatagtctacaggcgttacgcatctctcttct 273 Query: 273 tcctcgtcggcgtggacaacgatgagaatgagttagccatccttgaattcatacatcttc 332 || | || || || || ||||||| || ||| | || || || || |||||||||||| Sbjct: 274 tcatggttggggttgatgacgatgaaaacgagctggcgattctagagttcatacatcttt 333 Query: 333 tcgtggaaaccatggaccgccactttggcaacgtgtgcgagctcgacatcatgttccatc 392 | || || || |||||| || ||||| || ||||| ||||| ||||| |||||||||| Sbjct: 334 tggtcgagacaatggacaagcattttggaaatgtgtgtgagctagacataatgttccatc 393 Query: 393 tggaaaaagtgcacttcatgctcgaagagatggtgatgaacggttgcatcgtggagacga 452 |||| |||| || |||||||| ||||| ||||||||||| |||||||| |||||||| | Sbjct: 394 tggagaaagctcatttcatgctggaagaaatggtgatgaatggttgcattgtggagacaa 453 Query: 453 gcaaa 457 ||||| Sbjct: 454 gcaaa 458
>gb|AC005169.3| Arabidopsis thaliana chromosome 2 clone F6F22 map mi148, complete sequence Length = 126386 Score = 85.7 bits (43), Expect = 2e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 371 gagctcgacatcatgttccatctggaaaaagtgcacttcatgctcgaagagatggtgatg 430 ||||| ||||| |||||||||||||| |||| || |||||||| ||||| ||||||||| Sbjct: 95131 gagctagacataatgttccatctggagaaagctcatttcatgctggaagaaatggtgatg 95072 Query: 431 aacggttgcatcgtggagacgagcaaa 457 || |||||||| |||||||| |||||| Sbjct: 95071 aatggttgcattgtggagacaagcaaa 95045 Score = 54.0 bits (27), Expect = 6e-04 Identities = 93/115 (80%) Strand = Plus / Minus Query: 93 tggtgaacaagcaggggcagacgcggctggcgcagtactacgagcacctctccctcgacg 152 ||||||||||||| || ||||| || || || ||||||||||| ||| | ||||| | Sbjct: 96071 tggtgaacaagcaaggccagactcgtcttgctcagtactacgaatggctcactctcgagg 96012 Query: 153 agcgccgcgccctcgagggcgagatcgtccgcaagtgcctcgcccgcaccgacca 207 | || ||||| ||||| ||||| |||||||| || |||||||| |||| |||||| Sbjct: 96011 aacgtcgcgctctcgaaggcgaaatcgtccgtaaatgcctcgctcgcaacgacca 95957 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Minus Query: 224 gagcaccggaactacaaggtcgtctacaggcgctacgcctccctcttcttc 274 ||||| || ||||||||| | ||||||||||| ||||| || ||||||||| Sbjct: 95561 gagcatcgcaactacaagatagtctacaggcgttacgcatctctcttcttc 95511
>gb|AF528565.1| Zea mays cultivar BSSS53 chromosome 4 clone BAC 072, complete sequence Length = 106246 Score = 75.8 bits (38), Expect = 2e-10 Identities = 89/105 (84%), Gaps = 2/105 (1%) Strand = Plus / Plus Query: 98 aacaagcaggggcagacgcggctggcgcagtactacgagcacctctccctcgacgagcgc 157 ||||| ||||| |||| ||||| | || |||||||||||||||| | |||||||||| Sbjct: 54772 aacaaacagggctagacacggctagggcggtactacgagcacctc--catcgacgagcga 54829 Query: 158 cgcgccctcgagggcgagatcgtccgcaagtgcctcgcccgcacc 202 || ||||||||||| ||||||||| |||||||||| |||||||| Sbjct: 54830 cgagccctcgagggtcagatcgtccacaagtgcctcacccgcacc 54874 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gtggagcaccggaactacaa 240 |||||||||||||||||||| Sbjct: 55124 gtggagcaccggaactacaa 55143
>gb|AC160529.6| Mus musculus chromosome 1, clone RP24-141F19, complete sequence Length = 167687 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 34 ggaaggggagcgagaggaaggaaggggagggcgagag 70 |||||||||| |||||||||||||||||||| ||||| Sbjct: 34411 ggaaggggagggagaggaaggaaggggagggggagag 34375 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 36 aaggggagcgagaggaaggaaggggag 62 |||||||| |||||||||||||||||| Sbjct: 34464 aaggggagggagaggaaggaaggggag 34438
>gb|AC125368.7| Medicago truncatula clone mth2-13h15, complete sequence Length = 124271 Score = 54.0 bits (27), Expect = 6e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 367 gtgcgagctcgacatcatgttccatctggaaaaagtgcacttcatgctcgaagagatggt 426 ||||||||| || |||||||| ||| | ||||| || || || ||| | ||||| ||||| Sbjct: 72346 gtgcgagctagatatcatgtttcatttagaaaaggtacattttatgttggaagaaatggt 72405 Query: 427 gatgaacggttgcatcgtggagacgagcaaa 457 ||||| ||||| || ||||||||||||||| Sbjct: 72406 catgaatggttgtattgtggagacgagcaaa 72436
>gb|AC135797.13| Medicago truncatula clone mth2-11f7, complete sequence Length = 118242 Score = 54.0 bits (27), Expect = 6e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 367 gtgcgagctcgacatcatgttccatctggaaaaagtgcacttcatgctcgaagagatggt 426 ||||||||| || |||||||| ||| | ||||| || || || ||| | ||||| ||||| Sbjct: 66317 gtgcgagctagatatcatgtttcatttagaaaaggtacattttatgttggaagaaatggt 66376 Query: 427 gatgaacggttgcatcgtggagacgagcaaa 457 ||||| ||||| || ||||||||||||||| Sbjct: 66377 catgaatggttgtattgtggagacgagcaaa 66407
>ref|XM_363836.1| Magnaporthe grisea 70-15 hypothetical protein (MG01762.4) partial mRNA Length = 432 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 355 ctttggcaacgtgtgcgagctcgac 379 ||||||||||||||||||||||||| Sbjct: 285 ctttggcaacgtgtgcgagctcgac 309
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 35 gaaggggagcgagaggaaggaagggga 61 |||||||| |||||||||||||||||| Sbjct: 34023337 gaaggggaacgagaggaaggaagggga 34023311
>gb|AC144766.18| Medicago truncatula clone mth2-17c2, complete sequence Length = 92099 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Plus Query: 317 gaattcatacatcttctcgtggaaaccatggaccgccactttggcaacgtg 367 |||||||||||||| | || ||||||||||| || || |||||||||||| Sbjct: 81102 gaattcatacatctcttagtcgaaaccatggatcgacattttggcaacgtg 81152
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 35 gaaggggagcgagaggaaggaagggga 61 |||||||| |||||||||||||||||| Sbjct: 34113809 gaaggggaacgagaggaaggaagggga 34113783
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence Length = 172337 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 35 gaaggggagcgagaggaaggaagggga 61 |||||||| |||||||||||||||||| Sbjct: 34354 gaaggggaacgagaggaaggaagggga 34380
>ref|NM_021710.1| Mus musculus adaptor-related protein complex AP-4, sigma 1 (Ap4s1), mRNA Length = 1034 Score = 44.1 bits (22), Expect = 0.57 Identities = 40/46 (86%) Strand = Plus / Plus Query: 93 tggtgaacaagcaggggcagacgcggctggcgcagtactacgagca 138 ||||||||||||| |||||||| || ||| | ||||||||||||| Sbjct: 369 tggtgaacaagcaagggcagacccgactgtctaagtactacgagca 414
>gb|AC161055.2| Mus musculus BAC clone RP23-287L7 from chromosome 12, complete sequence Length = 189803 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 ggaaggggagcgagaggaagga 55 |||||||||||||||||||||| Sbjct: 49200 ggaaggggagcgagaggaagga 49179
>gb|BC001985.1| Mus musculus adaptor-related protein complex AP-4, sigma 1, mRNA (cDNA clone MGC:5660 IMAGE:3495981), complete cds Length = 879 Score = 44.1 bits (22), Expect = 0.57 Identities = 40/46 (86%) Strand = Plus / Plus Query: 93 tggtgaacaagcaggggcagacgcggctggcgcagtactacgagca 138 ||||||||||||| |||||||| || ||| | ||||||||||||| Sbjct: 440 tggtgaacaagcaagggcagacccgactgtctaagtactacgagca 485
>ref|XM_744199.1| Aspergillus fumigatus Af293 AP-1 adaptor complex subunit sigma (Afu2g01570) partial mRNA Length = 447 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 359 ggcaacgtgtgcgagctcgacatcat 384 |||||||| ||||||||||||||||| Sbjct: 289 ggcaacgtatgcgagctcgacatcat 314
>ref|XM_799034.1| Trypanosoma cruzi strain CL Brener clathrin coat assembly protein AP19 (Tc00.1047053509623.19) partial mRNA Length = 504 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 345 tggaccgccactttggcaacgtgtgcgagctcga 378 |||||||| |||||||||| || ||||||||||| Sbjct: 272 tggaccgctactttggcaatgtctgcgagctcga 305
>ref|XM_803925.1| Trypanosoma cruzi strain CL Brener clathrin coat assembly protein AP19 (Tc00.1047053510003.41) partial mRNA Length = 504 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 345 tggaccgccactttggcaacgtgtgcgagctcga 378 |||||||| |||||||||| || ||||||||||| Sbjct: 272 tggaccgctactttggcaatgtctgcgagctcga 305
>gb|AF509532.1| Trypanosoma cruzi clathrin assembly protein AP19-like protein (ClaATc) mRNA, complete cds Length = 504 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Plus Query: 345 tggaccgccactttggcaacgtgtgcgagctcga 378 |||||||| |||||||||| || ||||||||||| Sbjct: 272 tggaccgctactttggcaatgtctgcgagctcga 305
>emb|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cosmid contig 80A10 Length = 161126 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 359 ggcaacgtgtgcgagctcgacatcat 384 |||||||| ||||||||||||||||| Sbjct: 116086 ggcaacgtctgcgagctcgacatcat 116111
>emb|AL663107.13| Mouse DNA sequence from clone RP23-465K20 on chromosome 11 Contains a novel gene (2210415F13Rik), an NADH dehydrogenase (ubiquinone) Fe-S protein 3 (Ndufs3) pseudogene, a novel pseudogene, a novel gene (1810065E05Rik), a novel gene similar to rat solute carrier family 11 member 1 (Slc11a1), a novel gene, the Olfr30 gene for olfactory receptor 30, an olfactory receptor (MOR284-1P) pseudogene, the gene for olfactory receptor MOR284-2 (LOC216774), a novel gene similar to MOR275 (LOC193140), a ribosomal protein L24 (Rpl24) pseudogene, the gene for olfactory receptor MOR275-1, a DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 (Ddx5) pseudogene, an olfactory receptor (MOR275-3) pseudogene and a CpG island, complete sequence Length = 191700 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Plus Query: 34 ggaaggggagcgagaggaaggaaggggagggcgagaga 71 |||||||||| | ||||| |||||||||||| |||||| Sbjct: 42860 ggaaggggagggggaggagggaaggggagggggagaga 42897
>gb|BC053339.1| Mus musculus adaptor-related protein complex AP-4, sigma 1, mRNA (cDNA clone MGC:59060 IMAGE:5370721), complete cds Length = 895 Score = 44.1 bits (22), Expect = 0.57 Identities = 40/46 (86%) Strand = Plus / Plus Query: 93 tggtgaacaagcaggggcagacgcggctggcgcagtactacgagca 138 ||||||||||||| |||||||| || ||| | ||||||||||||| Sbjct: 200 tggtgaacaagcaagggcagacccgactgtctaagtactacgagca 245
>gb|AC073548.5| Homo sapiens chromosome 19 clone RP11-43N16, complete sequence Length = 167722 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 52 aggaaggggagggcgagagatgggga 77 ||||||||||||| |||||||||||| Sbjct: 104597 aggaaggggagggagagagatgggga 104572
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Minus Query: 359 ggcaacgtgtgcgagctcgacatcatgttc 388 |||||||| ||||||||||||||| ||||| Sbjct: 1105298 ggcaacgtctgcgagctcgacatcctgttc 1105269 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 344 atggaccgccactttggcaacgtgtgcgagctcgacatcat 384 ||||||||| |||| || || ||||||||||| |||||||| Sbjct: 662671 atggaccgctacttcggtaatgtgtgcgagctggacatcat 662711
>dbj|AK005283.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched library, clone:1500019B17 product:adaptor-related protein complex AP-4, beta 1, full insert sequence Length = 855 Score = 44.1 bits (22), Expect = 0.57 Identities = 40/46 (86%) Strand = Plus / Plus Query: 93 tggtgaacaagcaggggcagacgcggctggcgcagtactacgagca 138 ||||||||||||| |||||||| || ||| | ||||||||||||| Sbjct: 190 tggtgaacaagcaagggcagacccgactgtctaagtactacgagca 235
>ref|NM_211272.1| Eremothecium gossypii AFR370Cp (AFR370C), mRNA Length = 441 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Plus Query: 359 ggcaacgtgtgcgagctcgacatcatgttc 388 |||||||| ||||||||||||||| ||||| Sbjct: 298 ggcaacgtctgcgagctcgacatcctgttc 327
>gb|AF092093.1|AF092093 Mus musculus AP-4 adaptor complex sigma4 subunit mRNA, complete cds Length = 1034 Score = 44.1 bits (22), Expect = 0.57 Identities = 40/46 (86%) Strand = Plus / Plus Query: 93 tggtgaacaagcaggggcagacgcggctggcgcagtactacgagca 138 ||||||||||||| |||||||| || ||| | ||||||||||||| Sbjct: 369 tggtgaacaagcaagggcagacccgactgtctaagtactacgagca 414
>gb|AC159644.3| Mus musculus BAC clone RP23-358A18 from chromosome 12, complete sequence Length = 196310 Score = 44.1 bits (22), Expect = 0.57 Identities = 40/46 (86%) Strand = Plus / Plus Query: 93 tggtgaacaagcaggggcagacgcggctggcgcagtactacgagca 138 ||||||||||||| |||||||| || ||| | ||||||||||||| Sbjct: 117057 tggtgaacaagcaagggcagacccgactgtctaagtactacgagca 117102
>emb|CT033787.9| Mouse DNA sequence from clone RP24-86C3 on chromosome 12, complete sequence Length = 194345 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 ggaaggggagcgagaggaagga 55 |||||||||||||||||||||| Sbjct: 124927 ggaaggggagcgagaggaagga 124906
>gb|AC132410.4| Mus musculus BAC clone RP23-348E10 from 8, complete sequence Length = 175530 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 37 aggggagcgagaggaaggaaggggag 62 ||||||| |||||||||||||||||| Sbjct: 34233 aggggagggagaggaaggaaggggag 34208
>ref|NM_011941.2| Mus musculus mitogen activated protein kinase binding protein 1 (Mapkbp1), mRNA Length = 6943 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 gcctccctcttcttcctcgtc 280 ||||||||||||||||||||| Sbjct: 3485 gcctccctcttcttcctcgtc 3465
>ref|XM_652780.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0268.2), mRNA Length = 2382 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 gaaggaaggggagggcgagag 70 ||||||||||||||||||||| Sbjct: 105 gaaggaaggggagggcgagag 85
>gb|BC011271.1| Mus musculus mitogen activated protein kinase binding protein 1, mRNA (cDNA clone IMAGE:3710689), partial cds Length = 4060 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 gcctccctcttcttcctcgtc 280 ||||||||||||||||||||| Sbjct: 615 gcctccctcttcttcctcgtc 595
>ref|XM_754058.1| Ustilago maydis 521 hypothetical protein (UM03004.1) partial mRNA Length = 1086 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 356 tttggcaacgtgtgcgagctcgacatcat 384 ||||||||||| |||||||||||| |||| Sbjct: 475 tttggcaacgtttgcgagctcgacctcat 503
>ref|NM_001003826.1| Danio rerio adaptor-related protein complex 4, sigma 1 subunit (ap4s1), mRNA Length = 423 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 82 gttcgtgctgctggtgaacaagcaggggcagac 114 |||| ||||| |||||||||| ||||||||||| Sbjct: 9 gttcctgctgatggtgaacaaacaggggcagac 41
>emb|Z97353.3|HS90L6 Human DNA sequence from clone RP1-90L6 on chromosome 22q11.21-11.23, complete sequence Length = 190837 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 34 ggaaggggagcgagaggaaggaagg 58 |||||| |||||||||||||||||| Sbjct: 77807 ggaaggagagcgagaggaaggaagg 77783
>gb|BC114244.1| Danio rerio adaptor-related protein complex 4, sigma 1 subunit, mRNA (cDNA clone MGC:136677 IMAGE:8004037), complete cds Length = 662 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 82 gttcgtgctgctggtgaacaagcaggggcagac 114 |||| ||||| |||||||||| ||||||||||| Sbjct: 135 gttcctgctgatggtgaacaaacaggggcagac 167
>emb|AL691442.32| Human DNA sequence from clone RP11-540D14 on chromosome 1 Contains the 3' end of the ADAM15 gene for a disintegrin and metalloproteinase domain 15 (metargidin), the EFNA4 gene for ephrin-A4, the EFNA3 gene for ephrin-A3, the EFNA1 gene for ephrin-A1, the gene for a novel protein (LOC55974), the DPM3 gene for dolichyl-phosphate mannosyltransferase polypeptide 3 and four CpG islands, complete sequence Length = 92095 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 ggggagggcgagagatgggga 77 ||||||||||||||||||||| Sbjct: 88738 ggggagggcgagagatgggga 88718
>emb|AL390835.14| Human DNA sequence from clone RP5-1119O21 on chromosome 10 Contains the 5' end of a novel gene and a novel gene, complete sequence Length = 65508 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 34 ggaaggggagcgagaggaaggaagg 58 |||||||||| |||||||||||||| Sbjct: 33036 ggaaggggagagagaggaaggaagg 33012
>emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete genome; segment 1/29 Length = 299050 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 gcacctctccctcgacgagcg 156 ||||||||||||||||||||| Sbjct: 222314 gcacctctccctcgacgagcg 222294
>gb|BC070449.1| Mus musculus mitogen activated protein kinase binding protein 1, mRNA (cDNA clone MGC:91383 IMAGE:30543913), complete cds Length = 6943 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 gcctccctcttcttcctcgtc 280 ||||||||||||||||||||| Sbjct: 3485 gcctccctcttcttcctcgtc 3465
>emb|AL596026.13| Zebrafish DNA sequence from clone BUSM1-234G15 in linkage group 17 Contains the sly1 gene for suppressor of ypt1, a novel gene similar to AP4 (adaptor-related protein complex 4, sigma subunit), the 3' part of the strn3 gene for striatin, calmodulin binding protein 3, a novel gene similar to COCH (coagulation factor C homolog, cochlin), a gene for a novel 7 transmembrane receptor (rhodopsin family) and a novel gene similar to KIAA1333, complete sequence Length = 127993 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 82 gttcgtgctgctggtgaacaagcaggggcagac 114 |||| ||||| |||||||||| ||||||||||| Sbjct: 126494 gttcctgctgatggtgaacaaacaggggcagac 126526
>gb|AC008021.10| Homo sapiens chromosome 18, clone RP11-504H5, complete sequence Length = 169439 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 ggaaggggagggcgagagatg 73 ||||||||||||||||||||| Sbjct: 51811 ggaaggggagggcgagagatg 51831
>emb|AL672087.6| Zebrafish DNA sequence from clone BUSM1-115O7 in linkage group 17 Contains the 3' UTR of a novel gene, a novel gene similar to AP4S1 (adaptor-related protein complex 4, sigma 1 subunit) and the 5' part of the strn3 gene for striatin, calmodulin binding protein 3, complete sequence Length = 14900 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 82 gttcgtgctgctggtgaacaagcaggggcagac 114 |||| ||||| |||||||||| ||||||||||| Sbjct: 2901 gttcctgctgatggtgaacaaacaggggcagac 2869
>emb|BX324186.12| Zebrafish DNA sequence from clone DKEY-18B8 in linkage group 17, complete sequence Length = 153540 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 82 gttcgtgctgctggtgaacaagcaggggcagac 114 |||| ||||| |||||||||| ||||||||||| Sbjct: 117889 gttcctgctgatggtgaacaaacaggggcagac 117921
>gb|BC064274.1| Xenopus tropicalis adaptor-related protein complex 1, sigma 1 subunit, mRNA (cDNA clone MGC:76308 IMAGE:5379780), complete cds Length = 1165 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 356 tttggcaacgtgtgcgagctcgacatcat 384 ||||||| |||||||||||| |||||||| Sbjct: 321 tttggcagcgtgtgcgagctggacatcat 349
>ref|NM_204007.1| Xenopus tropicalis adaptor-related protein complex 1, sigma 1 subunit (MGC76308), mRNA Length = 1165 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 356 tttggcaacgtgtgcgagctcgacatcat 384 ||||||| |||||||||||| |||||||| Sbjct: 321 tttggcagcgtgtgcgagctggacatcat 349
>gb|AC090398.12| Homo sapiens chromosome 18, clone RP11-669I1, complete sequence Length = 133378 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 ggaaggggagggcgagagatg 73 ||||||||||||||||||||| Sbjct: 89449 ggaaggggagggcgagagatg 89469
>gb|AC083841.9| Homo sapiens chromosome 8, clone RP11-706C16, complete sequence Length = 203375 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 gagaggaaggaaggggagggc 65 ||||||||||||||||||||| Sbjct: 137030 gagaggaaggaaggggagggc 137010
>gb|AY267354.1| Emericella nidulans MesA (mesA) gene, complete cds Length = 2693 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 gaaggaaggggagggcgagag 70 ||||||||||||||||||||| Sbjct: 318 gaaggaaggggagggcgagag 298
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 39 gggagcgagaggaaggaaggggagg 63 |||||||||||||||||||| |||| Sbjct: 17734275 gggagcgagaggaaggaaggagagg 17734299
>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold Length = 1787293 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 34 ggaaggggagcgagaggaaggaagg 58 |||||||||||||||| |||||||| Sbjct: 732358 ggaaggggagcgagagaaaggaagg 732334
>dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0676H02 Length = 144252 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 39 gggagcgagaggaaggaaggggagg 63 |||||||||||||||||||| |||| Sbjct: 42909 gggagcgagaggaaggaaggagagg 42933
>dbj|AK122323.1| Mus musculus mRNA for mKIAA0596 protein Length = 6222 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 gcctccctcttcttcctcgtc 280 ||||||||||||||||||||| Sbjct: 2184 gcctccctcttcttcctcgtc 2164
>ref|NM_211025.1| Eremothecium gossypii AFR124Wp (AFR124W), mRNA Length = 471 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Plus Query: 344 atggaccgccactttggcaacgtgtgcgagctcgacatcat 384 ||||||||| |||| || || ||||||||||| |||||||| Sbjct: 280 atggaccgctacttcggtaatgtgtgcgagctggacatcat 320
>emb|CR942724.2| Xenopus tropicalis finished cDNA, clone TNeu023d20 Length = 1124 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 356 tttggcaacgtgtgcgagctcgacatcat 384 ||||||| |||||||||||| |||||||| Sbjct: 307 tttggcagcgtgtgcgagctggacatcat 335
>emb|AL162511.5|CNS01RHV Human chromosome 14 DNA sequence BAC R-259K15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 165126 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 gagaggaaggaaggggagggc 65 ||||||||||||||||||||| Sbjct: 120096 gagaggaaggaaggggagggc 120116
>emb|AL356803.2|CNS05TDL Human chromosome 14 DNA sequence Partial sequence from BAC C-2130G23 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 88380 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 gagaggaaggaaggggagggc 65 ||||||||||||||||||||| Sbjct: 26197 gagaggaaggaaggggagggc 26217
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 148 cgacgagcgccgcgccctcgagggc 172 ||||||||||||||||| ||||||| Sbjct: 1848319 cgacgagcgccgcgcccgcgagggc 1848295
>gb|AC117208.3| Mus musculus BAC clone RP23-279D15 from 10, complete sequence Length = 174202 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 35 gaaggggagcgagaggaaggaaggg 59 ||||||||| ||||||||||||||| Sbjct: 100171 gaaggggagggagaggaaggaaggg 100195
>dbj|AP006116.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT40C04, TM0199, complete sequence Length = 123325 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 261 cctccctcttcttcctcgtcg 281 ||||||||||||||||||||| Sbjct: 60701 cctccctcttcttcctcgtcg 60681
>emb|AL833774.4| Mouse DNA sequence from clone RP23-383I16 on chromosome 2, complete sequence Length = 194045 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 260 gcctccctcttcttcctcgtc 280 ||||||||||||||||||||| Sbjct: 165600 gcctccctcttcttcctcgtc 165620
>dbj|AB029482.1| Mus musculus mRNA for JNK-binding protein JNKBP1, complete cds Length = 4684 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 gcctccctcttcttcctcgtc 280 ||||||||||||||||||||| Sbjct: 3299 gcctccctcttcttcctcgtc 3279
>ref|NM_100608.2| Arabidopsis thaliana ATSTP2; carbohydrate transporter/ sugar porter AT1G07340 (ATSTP2) mRNA, complete cds Length = 1685 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 cgcctccctcttcttcctcgtcgg 282 ||||||| |||||||||||||||| Sbjct: 393 cgcctccatcttcttcctcgtcgg 416
>gb|AC166365.4| Mus musculus BAC clone RP24-428H14 from chromosome 9, complete sequence Length = 172948 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 gagaggaaggaaggggagggcgag 68 ||||||| |||||||||||||||| Sbjct: 17822 gagaggagggaaggggagggcgag 17845
>gb|U72484.1| Fugu rubripes RNA helicase (RNA-H) gene, partial cds; calcium channel beta3 subunit (CAB3B), adenylyl cyclase type VI (AC-VI), glucose-6-phosphate dehydrogenase (G6PD), and L-glycerol-3-phosphate (LG3P) genes, complete cds; and sodium channel 2 (BNaC2) gene, partial cds Length = 61901 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 531 ttcctcttttgtgtgaggagaaat 554 ||||||||||||||||| |||||| Sbjct: 1904 ttcctcttttgtgtgagtagaaat 1881
>gb|AF002991.1|HSAF002991 Homo sapiens cosmid, complete sequence Length = 37165 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 39 gggagcgagaggaaggaaggggagggcgagag 70 ||||| ||||||||||||||| |||| ||||| Sbjct: 20098 gggagggagaggaaggaagggaagggggagag 20067
>gb|AC165225.5| Mus musculus chromosome 3, clone RP24-70J13, complete sequence Length = 205069 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gagaggaaggaaggggaggg 64 |||||||||||||||||||| Sbjct: 77105 gagaggaaggaaggggaggg 77124
>gb|AC125021.12| Mus musculus chromosome 1, clone RP24-212P5, complete sequence Length = 174626 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gagaggaaggaaggggaggg 64 |||||||||||||||||||| Sbjct: 123289 gagaggaaggaaggggaggg 123270
>gb|AC132875.8| Mus musculus chromosome 15, clone RP24-381O23, complete sequence Length = 185786 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 gacaactgctgtatgcatgg 578 |||||||||||||||||||| Sbjct: 164019 gacaactgctgtatgcatgg 164038
>gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, complete sequence Length = 194380 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gagaggaaggaaggggaggg 64 |||||||||||||||||||| Sbjct: 186941 gagaggaaggaaggggaggg 186922
>ref|XM_952899.1| Neurospora crassa OR74A hypothetical protein (NCU07364.1) partial mRNA Length = 879 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 35 gaaggggagcgagaggaaggaaggggag 62 ||||| ||||||||||||| |||||||| Sbjct: 642 gaaggagagcgagaggaagaaaggggag 669
>ref|XM_327649.1| Neurospora crassa OR74A hypothetical protein (NCU07364.1) partial mRNA Length = 879 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 35 gaaggggagcgagaggaaggaaggggag 62 ||||| ||||||||||||| |||||||| Sbjct: 642 gaaggagagcgagaggaagaaaggggag 669
>gb|AC112789.4| Mus musculus BAC clone RP23-151J21 from chromosome 7, complete sequence Length = 200592 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 agaggaaggaaggggagggc 65 |||||||||||||||||||| Sbjct: 173502 agaggaaggaaggggagggc 173483 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 agaggaaggaaggggagggc 65 |||||||||||||||||||| Sbjct: 173358 agaggaaggaaggggagggc 173339
>ref|XM_654665.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2153.2), mRNA Length = 975 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 tacgcctccctcttcttcct 276 |||||||||||||||||||| Sbjct: 243 tacgcctccctcttcttcct 262
>gb|AC121119.12| Mus musculus chromosome 1, clone RP23-395D10, complete sequence Length = 221436 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gagaggaaggaaggggaggg 64 |||||||||||||||||||| Sbjct: 70813 gagaggaaggaaggggaggg 70832
>gb|AC164640.4| Mus musculus BAC clone RP23-228M12 from chromosome 7, complete sequence Length = 232468 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 agaggaaggaaggggagggc 65 |||||||||||||||||||| Sbjct: 169778 agaggaaggaaggggagggc 169797 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 agaggaaggaaggggagggc 65 |||||||||||||||||||| Sbjct: 169634 agaggaaggaaggggagggc 169653
>gb|AC114605.11| Mus musculus chromosome 5, clone RP23-373H20, complete sequence Length = 163969 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gagaggaaggaaggggaggg 64 |||||||||||||||||||| Sbjct: 17905 gagaggaaggaaggggaggg 17886
>gb|AC162389.6| Mus musculus 6 BAC RP24-114M8 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 189477 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gagaggaaggaaggggaggg 64 |||||||||||||||||||| Sbjct: 88114 gagaggaaggaaggggaggg 88133
>ref|XM_747091.1| Aspergillus fumigatus Af293 pH signal transduction protein PalA (Afu4g06400) partial mRNA Length = 2505 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 agagatggggatccggttcg 86 |||||||||||||||||||| Sbjct: 2421 agagatggggatccggttcg 2440
>gb|AC121784.2| Mus musculus BAC clone RP23-378G4 from 12, complete sequence Length = 163125 Score = 40.1 bits (20), Expect = 8.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 34 ggaaggggagcgagaggaaggaaggggagggcgaga 69 |||||||||| ||| ||| |||||||||||| |||| Sbjct: 103323 ggaaggggagggaggggagggaaggggagggggaga 103288
>gb|AC004963.2| Homo sapiens PAC clone RP5-1102A12 from 7, complete sequence Length = 173627 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gagaggaaggaaggggaggg 64 |||||||||||||||||||| Sbjct: 98116 gagaggaaggaaggggaggg 98135
>gb|AC007030.3| Homo sapiens PAC clone RP5-1112I4 from 7, complete sequence Length = 117853 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 agcctgggaacatagagaga 27 |||||||||||||||||||| Sbjct: 25356 agcctgggaacatagagaga 25337
>gb|AC019028.13| Mus musculus chromosome 5, clone RP23-88A22, complete sequence Length = 264425 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gagaggaaggaaggggaggg 64 |||||||||||||||||||| Sbjct: 39847 gagaggaaggaaggggaggg 39828 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gagaggaaggaaggggaggg 64 |||||||||||||||||||| Sbjct: 39807 gagaggaaggaaggggaggg 39788
>gb|AC138101.8| Mus musculus chromosome 5, clone RP23-149H20, complete sequence Length = 211521 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gagaggaaggaaggggaggg 64 |||||||||||||||||||| Sbjct: 119307 gagaggaaggaaggggaggg 119288 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gagaggaaggaaggggaggg 64 |||||||||||||||||||| Sbjct: 119267 gagaggaaggaaggggaggg 119248
>emb|AL683871.15| Human DNA sequence from clone RP13-76L22 on chromosome X, complete sequence Length = 175765 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 39 gggagcgagaggaaggaaggggagggcgagag 70 ||||| ||||||||||||||| |||| ||||| Sbjct: 40758 gggagggagaggaaggaagggaagggggagag 40727
>emb|AL596442.33| Human DNA sequence from clone RP11-302L19 on chromosome 6 Contains a novel gene, a ribosomal protein L12 (RPL12) and five CpG islands, complete sequence Length = 110817 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 aggggcagacgcggctggcg 124 |||||||||||||||||||| Sbjct: 104029 aggggcagacgcggctggcg 104010
>gb|AC109542.6| Rattus norvegicus 1 BAC CH230-270O15 (Children's Hospital Oakland Research Institute) complete sequence Length = 246913 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gagaggaaggaaggggaggg 64 |||||||||||||||||||| Sbjct: 72289 gagaggaaggaaggggaggg 72308
>emb|AL929545.8| Mouse DNA sequence from clone RP23-306I3 on chromosome 11 Contains the 3' end of a novel gene, complete sequence Length = 198821 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 aatgagttagccatccttga 318 |||||||||||||||||||| Sbjct: 193913 aatgagttagccatccttga 193932
>gb|AY125925.1| Toxoplasma gondii protein phosphatase 2B catalytic subunit (CNA) mRNA, complete cds Length = 3065 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aggaaggggagggcgagaga 71 |||||||||||||||||||| Sbjct: 1835 aggaaggggagggcgagaga 1816
>gb|AC022164.8| Homo sapiens chromosome 16 clone RP11-513N24, complete sequence Length = 208207 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 36 aaggggagcgagaggaaggaaggggagg 63 |||||||| |||||||||||||| |||| Sbjct: 155822 aaggggagggagaggaaggaaggagagg 155795
>gb|AC025205.12| Homo sapiens chromosome 17, clone RP11-140O10, complete sequence Length = 188417 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gagaggaaggaaggggaggg 64 |||||||||||||||||||| Sbjct: 151405 gagaggaaggaaggggaggg 151386
>gb|AC104122.2| Homo sapiens chromosome 5 clone RP11-410P18, complete sequence Length = 142636 Score = 40.1 bits (20), Expect = 8.9 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 34 ggaaggggag-cgagaggaaggaaggggaggg 64 |||||||||| |||| |||||||||||||||| Sbjct: 115243 ggaaggggaggcgaggggaaggaaggggaggg 115274
>gb|AC093510.2| Homo sapiens chromosome 5 clone CTD-2373J6, complete sequence Length = 125933 Score = 40.1 bits (20), Expect = 8.9 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 34 ggaaggggag-cgagaggaaggaaggggaggg 64 |||||||||| |||| |||||||||||||||| Sbjct: 40774 ggaaggggaggcgaggggaaggaaggggaggg 40805
>gb|AF443601.1|AF443601 Oryza sativa clathrin assembly protein AP17-like protein mRNA, complete cds Length = 842 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 103 gcaggggcagacgcggctggcgcagtactacg 134 ||||||| ||||||||||||| ||||||||| Sbjct: 90 gcaggggaagacgcggctggccaagtactacg 121
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 103 gcaggggcagacgcggctggcgcagtactacg 134 ||||||| ||||||||||||| ||||||||| Sbjct: 5601445 gcaggggaagacgcggctggccaagtactacg 5601476 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ctccctcttcttcctcgtcg 281 |||||||||||||||||||| Sbjct: 4301264 ctccctcttcttcctcgtcg 4301283
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctccctcttcttcctcgtcg 281 |||||||||||||||||||| Sbjct: 3771247 ctccctcttcttcctcgtcg 3771228
>emb|BX813610.1|CNS0AALW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB27ZG10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1690 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 cgcctccctcttcttcctcgtcgg 282 ||||||| |||||||||||||||| Sbjct: 391 cgcctccatcttcttcctcgtcgg 414
>gb|AC022464.4|AC022464 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence Length = 104830 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 259 cgcctccctcttcttcctcgtcgg 282 ||||||| |||||||||||||||| Sbjct: 88763 cgcctccatcttcttcctcgtcgg 88740
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 cgagcgccgcgccctcgagg 170 |||||||||||||||||||| Sbjct: 2703074 cgagcgccgcgccctcgagg 2703055
>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496D04 Length = 197358 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctccctcttcttcctcgtcg 281 |||||||||||||||||||| Sbjct: 10359 ctccctcttcttcctcgtcg 10340
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0050F10 Length = 151986 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctccctcttcttcctcgtcg 281 |||||||||||||||||||| Sbjct: 115598 ctccctcttcttcctcgtcg 115579
>dbj|AK104086.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F07, full insert sequence Length = 848 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 103 gcaggggcagacgcggctggcgcagtactacg 134 ||||||| ||||||||||||| ||||||||| Sbjct: 163 gcaggggaagacgcggctggccaagtactacg 194
>gb|AC154557.2| Mus musculus BAC clone RP23-425M9 from 17, complete sequence Length = 186378 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 45 gagaggaaggaaggggagggcgagagat 72 ||||||||||| |||||||| ||||||| Sbjct: 79930 gagaggaaggagggggagggagagagat 79903
>emb|CT030256.13| Mouse DNA sequence from clone RP23-346K5 on chromosome 13, complete sequence Length = 197972 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 37 aggggagcgagaggaaggaaggggaggg 64 ||||||| || ||||||||||||||||| Sbjct: 24264 aggggagggaaaggaaggaaggggaggg 24291
>dbj|AK069232.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010A09, full insert sequence Length = 907 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 103 gcaggggcagacgcggctggcgcagtactacg 134 ||||||| ||||||||||||| ||||||||| Sbjct: 164 gcaggggaagacgcggctggccaagtactacg 195
>gb|AC013622.12| Mus musculus chromosome 5, clone RP23-232H18, complete sequence Length = 240821 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gagaggaaggaaggggaggg 64 |||||||||||||||||||| Sbjct: 8881 gagaggaaggaaggggaggg 8900 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gagaggaaggaaggggaggg 64 |||||||||||||||||||| Sbjct: 8841 gagaggaaggaaggggaggg 8860
>gb|AC172989.2| Mus musculus BAC clone RP24-556J6 from chromosome 15, complete sequence Length = 184996 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 gacaactgctgtatgcatgg 578 |||||||||||||||||||| Sbjct: 3202 gacaactgctgtatgcatgg 3221
>dbj|AP001086.7| Homo sapiens genomic DNA, chromosome 18 clone:RP11-681N23, complete sequence Length = 185603 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 568 tgtatgcatgggtggttgtg 587 |||||||||||||||||||| Sbjct: 69123 tgtatgcatgggtggttgtg 69142
>gb|AC005900.1|AC005900 Homo sapiens chromosome 17, clone hRPK.998_F_8, complete sequence Length = 175066 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gagaggaaggaaggggaggg 64 |||||||||||||||||||| Sbjct: 27158 gagaggaaggaaggggaggg 27139
>gb|AE000657.1| Aquifex aeolicus VF5, complete genome Length = 1551335 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 tccctcttcttcctcgtcgg 282 |||||||||||||||||||| Sbjct: 1031504 tccctcttcttcctcgtcgg 1031485
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 103 gcaggggcagacgcggctggcgcagtactacg 134 ||||||| ||||||||||||| ||||||||| Sbjct: 5601434 gcaggggaagacgcggctggccaagtactacg 5601465 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ctccctcttcttcctcgtcg 281 |||||||||||||||||||| Sbjct: 4301251 ctccctcttcttcctcgtcg 4301270
>emb|BX001060.3|CNS08CE8 Oryza sativa chromosome 12, . BAC OSJNBa0056M17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 178147 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 ctccctcttcttcctcgtcg 281 |||||||||||||||||||| Sbjct: 150447 ctccctcttcttcctcgtcg 150428
>emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F04 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160556 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 103 gcaggggcagacgcggctggcgcagtactacg 134 ||||||| ||||||||||||| ||||||||| Sbjct: 154250 gcaggggaagacgcggctggccaagtactacg 154281
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 139684 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 103 gcaggggcagacgcggctggcgcagtactacg 134 ||||||| ||||||||||||| ||||||||| Sbjct: 51440 gcaggggaagacgcggctggccaagtactacg 51409
>emb|CT030155.10| Mouse DNA sequence from clone RP23-425N11 on chromosome 17, complete sequence Length = 189713 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 45 gagaggaaggaaggggagggcgagagat 72 ||||||||||| |||||||| ||||||| Sbjct: 113819 gagaggaaggagggggagggagagagat 113792
>gb|AC134523.5| Mus musculus BAC clone RP24-492M8 from 5, complete sequence Length = 178801 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gagaggaaggaaggggaggg 64 |||||||||||||||||||| Sbjct: 120352 gagaggaaggaaggggaggg 120371
>gb|AC147645.3| Gallus gallus BAC clone CH261-121C23 from chromosome unknown, complete sequence Length = 158903 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 622 tgctgaaaatgaagaccccatcat 645 ||||||||||||||| |||||||| Sbjct: 18876 tgctgaaaatgaagatcccatcat 18899
>dbj|AP004915.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT16G15, TM0073, complete sequence Length = 90077 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 54 gaaggggagggcgagagatgggga 77 |||||||||||| ||||||||||| Sbjct: 12713 gaaggggagggcaagagatgggga 12690
>gb|AC164565.1| Mus musculus BAC clone RP23-99O13 from chromosome 9, complete sequence Length = 227367 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 gagaggaaggaaggggagggcgag 68 ||||||| |||||||||||||||| Sbjct: 7844 gagaggagggaaggggagggcgag 7821
>gb|AC164877.2| Mus musculus BAC clone RP24-340N21 from chromosome 13, complete sequence Length = 179184 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 37 aggggagcgagaggaaggaaggggaggg 64 ||||||| || ||||||||||||||||| Sbjct: 24141 aggggagggaaaggaaggaaggggaggg 24168
>dbj|D88268.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:47H9 Length = 44553 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 ggaaggggagcgagaggaaggaag 57 ||||||||||||||||||| |||| Sbjct: 14003 ggaaggggagcgagaggaatgaag 14026
>dbj|D87008.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:47H9 upstream contig Length = 30965 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 ggaaggggagcgagaggaaggaag 57 ||||||||||||||||||| |||| Sbjct: 14003 ggaaggggagcgagaggaatgaag 14026 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,009,679 Number of Sequences: 3902068 Number of extensions: 6009679 Number of successful extensions: 120972 Number of sequences better than 10.0: 135 Number of HSP's better than 10.0 without gapping: 135 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 119811 Number of HSP's gapped (non-prelim): 1154 length of query: 652 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 629 effective length of database: 17,143,297,704 effective search space: 10783134255816 effective search space used: 10783134255816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)