ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal34p16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017884.1| Zea mays clone EL01N0514G01.c mRNA sequence Length = 627 Score = 236 bits (119), Expect = 7e-59 Identities = 212/243 (87%) Strand = Plus / Plus Query: 30 agctgatggtgatcgacttctccgcctcctggtgcgggccctgccgcttcatcgagcccg 89 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct: 119 agctgatggtgatcgacttctcggcgtcctggtgcgggccctgccgcttcatcgagccgg 178 Query: 90 ccttcaaggagatggcctcccgcttcgccgacgccctcttcgtcaagatcgacgtcgacg 149 ||||||||||| |||||||||||||| |||| ||| ||||| ||||| |||||||||||| Sbjct: 179 ccttcaaggagctggcctcccgcttcaccgatgccatcttcatcaaggtcgacgtcgacg 238 Query: 150 agctcgcggaggttgcaaagacattccgcgtagaggcgatgccgacctttgtgctggtga 209 ||||||||||||| |||| ||||| |||||||||||||| || || |||||||| | Sbjct: 239 agctcgcggaggtcgcaaggacatggaaggtagaggcgatgccaacgttcgtgctggtca 298 Query: 210 agggcgggcaggaggtgagtcgcgtggtcggggctaagaaggatgagcttgacaggaaga 269 ||| ||| ||||||| | || ||| | |||||||||||||| |||||||| ||||||| Sbjct: 299 aggatgggaaggaggtaggccgtgtgattggggctaagaaggacgagcttgagaggaaga 358 Query: 270 tca 272 ||| Sbjct: 359 tca 361
>gb|AY104013.1| Zea mays PCO085678 mRNA sequence Length = 736 Score = 236 bits (119), Expect = 7e-59 Identities = 212/243 (87%) Strand = Plus / Plus Query: 30 agctgatggtgatcgacttctccgcctcctggtgcgggccctgccgcttcatcgagcccg 89 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct: 183 agctgatggtgatcgacttctcggcgtcctggtgcgggccctgccgcttcatcgagccgg 242 Query: 90 ccttcaaggagatggcctcccgcttcgccgacgccctcttcgtcaagatcgacgtcgacg 149 ||||||||||| |||||||||||||| |||| ||| ||||| ||||| |||||||||||| Sbjct: 243 ccttcaaggagctggcctcccgcttcaccgatgccatcttcatcaaggtcgacgtcgacg 302 Query: 150 agctcgcggaggttgcaaagacattccgcgtagaggcgatgccgacctttgtgctggtga 209 ||||||||||||| |||| ||||| |||||||||||||| || || |||||||| | Sbjct: 303 agctcgcggaggtcgcaaggacatggaaggtagaggcgatgccaacgttcgtgctggtca 362 Query: 210 agggcgggcaggaggtgagtcgcgtggtcggggctaagaaggatgagcttgacaggaaga 269 ||| ||| ||||||| | || ||| | |||||||||||||| |||||||| ||||||| Sbjct: 363 aggatgggaaggaggtaggccgtgtgattggggctaagaaggacgagcttgagaggaaga 422 Query: 270 tca 272 ||| Sbjct: 423 tca 425
>ref|NM_185032.1| Oryza sativa (japonica cultivar-group), mRNA Length = 745 Score = 161 bits (81), Expect = 3e-36 Identities = 111/121 (91%) Strand = Plus / Plus Query: 30 agctgatggtgatcgacttctccgcctcctggtgcgggccctgccgcttcatcgagcccg 89 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct: 238 agctgatcgtgatcgacttctccgccacctggtgcgggccctgccgcttcatcgagccgg 297 Query: 90 ccttcaaggagatggcctcccgcttcgccgacgccctcttcgtcaagatcgacgtcgacg 149 |||||||||| |||||| ||||||||||||||| ||||| |||||||||| ||||||| Sbjct: 298 ccttcaaggacatggccggacgcttcgccgacgccgtcttcttcaagatcgatgtcgacg 357 Query: 150 a 150 | Sbjct: 358 a 358 Score = 83.8 bits (42), Expect = 6e-13 Identities = 99/118 (83%) Strand = Plus / Plus Query: 182 gaggcgatgccgacctttgtgctggtgaagggcgggcaggaggtgagtcgcgtggtcggg 241 ||||| ||||||||||||||| | | ||||||||| ||||||| ||||||||||| || Sbjct: 390 gaggccatgccgacctttgtgttaatcaagggcgggaaggaggttagtcgcgtggttggt 449 Query: 242 gctaagaaggatgagcttgacaggaagatcaagacgttcatctcatcgtcctgatcct 299 |||||||||||||| || || ||||| |||| | |||||| ||||| |||| ||||| Sbjct: 450 gctaagaaggatgaactggagaggaaagtcaacatgttcatttcatcctcctcatcct 507
>dbj|AK062383.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-B11, full insert sequence Length = 701 Score = 161 bits (81), Expect = 3e-36 Identities = 111/121 (91%) Strand = Plus / Plus Query: 30 agctgatggtgatcgacttctccgcctcctggtgcgggccctgccgcttcatcgagcccg 89 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct: 242 agctgatcgtgatcgacttctccgccacctggtgcgggccctgccgcttcatcgagccgg 301 Query: 90 ccttcaaggagatggcctcccgcttcgccgacgccctcttcgtcaagatcgacgtcgacg 149 |||||||||| |||||| ||||||||||||||| ||||| |||||||||| ||||||| Sbjct: 302 ccttcaaggacatggccggacgcttcgccgacgccgtcttcttcaagatcgatgtcgacg 361 Query: 150 a 150 | Sbjct: 362 a 362 Score = 83.8 bits (42), Expect = 6e-13 Identities = 99/118 (83%) Strand = Plus / Plus Query: 182 gaggcgatgccgacctttgtgctggtgaagggcgggcaggaggtgagtcgcgtggtcggg 241 ||||| ||||||||||||||| | | ||||||||| ||||||| ||||||||||| || Sbjct: 394 gaggccatgccgacctttgtgttaatcaagggcgggaaggaggttagtcgcgtggttggt 453 Query: 242 gctaagaaggatgagcttgacaggaagatcaagacgttcatctcatcgtcctgatcct 299 |||||||||||||| || || ||||| |||| | |||||| ||||| |||| ||||| Sbjct: 454 gctaagaaggatgaactggagaggaaagtcaacatgttcatttcatcctcctcatcct 511
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 153 bits (77), Expect = 8e-34 Identities = 104/113 (92%) Strand = Plus / Minus Query: 38 gtgatcgacttctccgcctcctggtgcgggccctgccgcttcatcgagcccgccttcaag 97 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct: 33089313 gtgatcgacttctccgccacctggtgcgggccctgccgcttcatcgagccggccttcaag 33089254 Query: 98 gagatggcctcccgcttcgccgacgccctcttcgtcaagatcgacgtcgacga 150 || |||||| ||||||||||||||| ||||| |||||||||| |||||||| Sbjct: 33089253 gacatggccggacgcttcgccgacgccgtcttcttcaagatcgatgtcgacga 33089201 Score = 83.8 bits (42), Expect = 6e-13 Identities = 99/118 (83%) Strand = Plus / Minus Query: 182 gaggcgatgccgacctttgtgctggtgaagggcgggcaggaggtgagtcgcgtggtcggg 241 ||||| ||||||||||||||| | | ||||||||| ||||||| ||||||||||| || Sbjct: 33087848 gaggccatgccgacctttgtgttaatcaagggcgggaaggaggttagtcgcgtggttggt 33087789 Query: 242 gctaagaaggatgagcttgacaggaagatcaagacgttcatctcatcgtcctgatcct 299 |||||||||||||| || || ||||| |||| | |||||| ||||| |||| ||||| Sbjct: 33087788 gctaagaaggatgaactggagaggaaagtcaacatgttcatttcatcctcctcatcct 33087731
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 153 bits (77), Expect = 8e-34 Identities = 104/113 (92%) Strand = Plus / Minus Query: 38 gtgatcgacttctccgcctcctggtgcgggccctgccgcttcatcgagcccgccttcaag 97 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct: 33179823 gtgatcgacttctccgccacctggtgcgggccctgccgcttcatcgagccggccttcaag 33179764 Query: 98 gagatggcctcccgcttcgccgacgccctcttcgtcaagatcgacgtcgacga 150 || |||||| ||||||||||||||| ||||| |||||||||| |||||||| Sbjct: 33179763 gacatggccggacgcttcgccgacgccgtcttcttcaagatcgatgtcgacga 33179711 Score = 83.8 bits (42), Expect = 6e-13 Identities = 99/118 (83%) Strand = Plus / Minus Query: 182 gaggcgatgccgacctttgtgctggtgaagggcgggcaggaggtgagtcgcgtggtcggg 241 ||||| ||||||||||||||| | | ||||||||| ||||||| ||||||||||| || Sbjct: 33178358 gaggccatgccgacctttgtgttaatcaagggcgggaaggaggttagtcgcgtggttggt 33178299 Query: 242 gctaagaaggatgagcttgacaggaagatcaagacgttcatctcatcgtcctgatcct 299 |||||||||||||| || || ||||| |||| | |||||| ||||| |||| ||||| Sbjct: 33178298 gctaagaaggatgaactggagaggaaagtcaacatgttcatttcatcctcctcatcct 33178241
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete sequence Length = 139823 Score = 153 bits (77), Expect = 8e-34 Identities = 104/113 (92%) Strand = Plus / Plus Query: 38 gtgatcgacttctccgcctcctggtgcgggccctgccgcttcatcgagcccgccttcaag 97 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct: 33995 gtgatcgacttctccgccacctggtgcgggccctgccgcttcatcgagccggccttcaag 34054 Query: 98 gagatggcctcccgcttcgccgacgccctcttcgtcaagatcgacgtcgacga 150 || |||||| ||||||||||||||| ||||| |||||||||| |||||||| Sbjct: 34055 gacatggccggacgcttcgccgacgccgtcttcttcaagatcgatgtcgacga 34107 Score = 83.8 bits (42), Expect = 6e-13 Identities = 99/118 (83%) Strand = Plus / Plus Query: 182 gaggcgatgccgacctttgtgctggtgaagggcgggcaggaggtgagtcgcgtggtcggg 241 ||||| ||||||||||||||| | | ||||||||| ||||||| ||||||||||| || Sbjct: 35460 gaggccatgccgacctttgtgttaatcaagggcgggaaggaggttagtcgcgtggttggt 35519 Query: 242 gctaagaaggatgagcttgacaggaagatcaagacgttcatctcatcgtcctgatcct 299 |||||||||||||| || || ||||| |||| | |||||| ||||| |||| ||||| Sbjct: 35520 gctaagaaggatgaactggagaggaaagtcaacatgttcatttcatcctcctcatcct 35577
>ref|XM_476962.1| Oryza sativa (japonica cultivar-group), mRNA Length = 417 Score = 83.8 bits (42), Expect = 6e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 92 ttcaaggagatggcctcccgcttcgccgacgccctcttcgtcaagatcgacgtcgacgag 151 ||||||||||||||| ||||||| |||||| | |||| ||||| |||||||||||||| Sbjct: 193 ttcaaggagatggccggccgcttcaccgacgtcgccttcctcaaggtcgacgtcgacgag 252 Query: 152 ctcgcggaggttgcaaagacattccgcgtagaggcgatgccgacctttgtgctggtgaag 211 ||||||||||| || ||| | || || |||||||||||||| || ||||||| || | Sbjct: 253 ctcgcggaggtggcgcggacctggcgggtggaggcgatgccgacgttcgtgctggcgagg 312 Query: 212 ggcgggcaggaggt 225 ||||| ||||||| Sbjct: 313 ggcggcgaggaggt 326
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Minus Query: 92 ttcaaggagatggcctcccgcttcgccgacgccctcttcgtcaagatcgacgtcgacgag 151 ||||||||||||||| ||||||| |||||| | |||| ||||| |||||||||||||| Sbjct: 4913765 ttcaaggagatggccggccgcttcaccgacgtcgccttcctcaaggtcgacgtcgacgag 4913706 Query: 152 ctcgcgg 158 ||||||| Sbjct: 4913705 ctcgcgg 4913699 Score = 40.1 bits (20), Expect = 8.7 Identities = 38/44 (86%) Strand = Plus / Minus Query: 182 gaggcgatgccgacctttgtgctggtgaagggcgggcaggaggt 225 |||||||||||||| || ||||||| || |||||| ||||||| Sbjct: 4913119 gaggcgatgccgacgttcgtgctggcgaggggcggcgaggaggt 4913076
>dbj|AP005173.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0003E08 Length = 161095 Score = 69.9 bits (35), Expect = 1e-08 Identities = 59/67 (88%) Strand = Plus / Minus Query: 92 ttcaaggagatggcctcccgcttcgccgacgccctcttcgtcaagatcgacgtcgacgag 151 ||||||||||||||| ||||||| |||||| | |||| ||||| |||||||||||||| Sbjct: 99249 ttcaaggagatggccggccgcttcaccgacgtcgccttcctcaaggtcgacgtcgacgag 99190 Query: 152 ctcgcgg 158 ||||||| Sbjct: 99189 ctcgcgg 99183 Score = 40.1 bits (20), Expect = 8.7 Identities = 38/44 (86%) Strand = Plus / Minus Query: 182 gaggcgatgccgacctttgtgctggtgaagggcgggcaggaggt 225 |||||||||||||| || ||||||| || |||||| ||||||| Sbjct: 98603 gaggcgatgccgacgttcgtgctggcgaggggcggcgaggaggt 98560
>ref|XM_803076.1| Trypanosoma cruzi strain CL Brener tryparedoxin (Tc00.1047053509997.30) partial mRNA Length = 435 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Plus Query: 45 acttctccgcctcctggtgcgggccctgccgc 76 |||||||||||||||||||| |||||||||| Sbjct: 101 acttctccgcctcctggtgcccgccctgccgc 132
>emb|AJ313314.1|TCR313314 Trypanosoma cruzi TPNI gene for Tryparedoxin Length = 435 Score = 48.1 bits (24), Expect = 0.036 Identities = 30/32 (93%) Strand = Plus / Plus Query: 45 acttctccgcctcctggtgcgggccctgccgc 76 |||||||||||||||||||| |||||||||| Sbjct: 101 acttctccgcctcctggtgcccgccctgccgc 132
>gb|AY575954.1| Glycine max thioredoxin mRNA, complete cds Length = 408 Score = 48.1 bits (24), Expect = 0.036 Identities = 24/24 (100%) Strand = Plus / Plus Query: 127 cttcgtcaagatcgacgtcgacga 150 |||||||||||||||||||||||| Sbjct: 240 cttcgtcaagatcgacgtcgacga 263
>emb|AL603913.14| Mouse DNA sequence from clone RP23-103H9 on chromosome 11 Contains the gene for a novel protein (3732413I11Rik), a novel gene (4930597A21Rik), the 5' end of the Ebf1 gene for early B-cell factor 1, a novel gene and a CpG island, complete sequence Length = 215524 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 402 cttctaaaatgctgcaaaatcc 423 |||||||||||||||||||||| Sbjct: 99901 cttctaaaatgctgcaaaatcc 99922
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 agcccgccttcaaggagatgg 104 ||||||||||||||||||||| Sbjct: 812153 agcccgccttcaaggagatgg 812133
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 59 tggtgcgggccctgccgcttcatcg 83 |||||||||||||||||| |||||| Sbjct: 1949700 tggtgcgggccctgccgcatcatcg 1949724
>ref|XM_747823.1| Aspergillus fumigatus Af293 MFS multidrug transporter (Afu1g15490) partial mRNA Length = 1809 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 tgatcgtcatctgtcaccttg 507 ||||||||||||||||||||| Sbjct: 188 tgatcgtcatctgtcaccttg 168
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 2.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 39 tgatcgacttctccgcctcctggtgcgggccctgccg 75 |||||||||||| || |||||||||||||| ||||| Sbjct: 8764241 tgatcgacttctgggcgtcctggtgcgggccgtgccg 8764205
>gb|AC092836.4| Homo sapiens BAC clone RP11-50B16 from 2, complete sequence Length = 165768 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 351 cccagtggcaagaggctcctatggt 375 |||||||||||||||| |||||||| Sbjct: 127919 cccagtggcaagaggcacctatggt 127895
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 ccgcctcctggtgcgggccct 71 ||||||||||||||||||||| Sbjct: 831041 ccgcctcctggtgcgggccct 831021
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 ccgcctcctggtgcgggccct 71 ||||||||||||||||||||| Sbjct: 500429 ccgcctcctggtgcgggccct 500409
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 gatcgacttctccgcctcctg 60 ||||||||||||||||||||| Sbjct: 3544042 gatcgacttctccgcctcctg 3544062
>gb|AC125180.6| Mus musculus BAC clone RP23-322K1 from chromosome 14, complete sequence Length = 200560 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 457 gatcgtgtaaatgtgtaactctgg 480 |||||||||||||||| ||||||| Sbjct: 82483 gatcgtgtaaatgtgtgactctgg 82506
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 42 tcgacttctccgcctcctggtgcgggccctgc 73 ||||||||| ||| ||||||||||||||||| Sbjct: 868563 tcgacttctgggccgcctggtgcgggccctgc 868594
>ref|XM_474336.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 543 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 58 ctggtgcgggccctgccgcttcatcgagcccg 89 |||||||||||| |||||| |||||| ||||| Sbjct: 285 ctggtgcgggccgtgccgcctcatcgcgcccg 316
>gb|AY360391.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0023H09, complete sequence Length = 178320 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 ccctcttcgtcaagatcgacgtcg 146 ||||||||||||||||||| |||| Sbjct: 60717 ccctcttcgtcaagatcgatgtcg 60694
>gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0074N12, complete sequence Length = 187972 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 ccctcttcgtcaagatcgacgtcg 146 ||||||||||||||||||| |||| Sbjct: 16218 ccctcttcgtcaagatcgatgtcg 16241
>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0008H02, complete sequence Length = 143438 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 gcctcccgcttcgccgacgccctc 127 ||||||| |||||||||||||||| Sbjct: 7545 gcctcccacttcgccgacgccctc 7522
>gb|AC136377.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0028G07, complete sequence Length = 157463 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 gcctcccgcttcgccgacgccctc 127 ||||||| |||||||||||||||| Sbjct: 93862 gcctcccacttcgccgacgccctc 93839
>ref|NM_009925.2| Mus musculus procollagen, type X, alpha 1 (Col10a1), mRNA Length = 4964 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 aggatgagcttgacaggaag 268 |||||||||||||||||||| Sbjct: 2760 aggatgagcttgacaggaag 2741
>gb|AC021709.12| Mus musculus chromosome 10, clone RP23-194I3, complete sequence Length = 319367 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 aggatgagcttgacaggaag 268 |||||||||||||||||||| Sbjct: 69698 aggatgagcttgacaggaag 69717
>gb|AC149474.15| Medicago truncatula clone mth2-122l24, complete sequence Length = 129008 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 546 attcatgtttttattctgga 565 |||||||||||||||||||| Sbjct: 104469 attcatgtttttattctgga 104488
>emb|AL513549.13| Human DNA sequence from clone RP11-424H23 on chromosome 6 Contains part of a novel gene (FLJ20342), complete sequence Length = 131374 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ggcaatcaagttactgtgat 527 |||||||||||||||||||| Sbjct: 22935 ggcaatcaagttactgtgat 22916
>emb|Z21610.1|MMA1TXCOL M.musculus encoding alpha-1 type-x collagen Length = 3422 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 aggatgagcttgacaggaag 268 |||||||||||||||||||| Sbjct: 2361 aggatgagcttgacaggaag 2342
>emb|X67348.1|MMCOL10A Mus musculus COL10A1 gene for alpha-1 collagen type X Length = 9331 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 aggatgagcttgacaggaag 268 |||||||||||||||||||| Sbjct: 7127 aggatgagcttgacaggaag 7108
>emb|X65121.1|MMCOL10A1 M.musculus COL10A1 gene for alpha 1 (X) collagen Length = 2215 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 aggatgagcttgacaggaag 268 |||||||||||||||||||| Sbjct: 1957 aggatgagcttgacaggaag 1938
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cttcgccgacgccctcttcg 131 |||||||||||||||||||| Sbjct: 177525 cttcgccgacgccctcttcg 177544
>emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10, complete sequence Length = 150206 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 58 ctggtgcgggccctgccgcttcatcgagcccg 89 |||||||||||| |||||| |||||| ||||| Sbjct: 3180 ctggtgcgggccgtgccgcctcatcgcgcccg 3211
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 tcgacttctccgcctcctggtgcg 65 |||||||||||||| ||||||||| Sbjct: 783879 tcgacttctccgccgcctggtgcg 783856
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gtgctggtgaagggcgggca 219 |||||||||||||||||||| Sbjct: 4313194 gtgctggtgaagggcgggca 4313213
>emb|BX322574.10| Zebrafish DNA sequence from clone DKEY-35I15 in linkage group 3, complete sequence Length = 150999 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 579 gttactgaaaaaacgacact 598 |||||||||||||||||||| Sbjct: 13093 gttactgaaaaaacgacact 13112
>gb|DQ021448.1| Nicotiana alata thioredoxin H (Trxh) mRNA, complete cds Length = 699 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 127 cttcgtcaagatcgacgtcgacgagctc 154 ||||||||| ||||||||||| |||||| Sbjct: 385 cttcgtcaaaatcgacgtcgatgagctc 412
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 58 ctggtgcgggccctgccgcttcatcgagcccg 89 |||||||||||| |||||| |||||| ||||| Sbjct: 34549058 ctggtgcgggccgtgccgcctcatcgcgcccg 34549089
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 gcctcccgcttcgccgacgccctc 127 ||||||| |||||||||||||||| Sbjct: 17499848 gcctcccacttcgccgacgccctc 17499825
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 ccctcttcgtcaagatcgacgtcg 146 ||||||||||||||||||| |||| Sbjct: 12679039 ccctcttcgtcaagatcgatgtcg 12679062
>gb|AC004086.14| Homo sapiens 12 PAC RP3-329E11 (Roswell Park Cancer Institute Human Bac Library) complete sequence Length = 94508 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 tctaaaatgctgcaaaatcc 423 |||||||||||||||||||| Sbjct: 6411 tctaaaatgctgcaaaatcc 6430
>gb|AC154563.2| Mus musculus BAC clone RP23-401E22 from chromosome 14, complete sequence Length = 206798 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 457 gatcgtgtaaatgtgtaactctgg 480 |||||||||||||||| ||||||| Sbjct: 9025 gatcgtgtaaatgtgtgactctgg 9002
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gtgctggtgaagggcgggca 219 |||||||||||||||||||| Sbjct: 91783 gtgctggtgaagggcgggca 91802
>dbj|AP005166.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0058D03 Length = 184235 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 ccctcttcgtcaagatcgacgtcg 146 ||||||||||||||||||| |||| Sbjct: 23034 ccctcttcgtcaagatcgatgtcg 23057
>dbj|AP005162.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0051M20 Length = 152702 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 ccctcttcgtcaagatcgacgtcg 146 ||||||||||||||||||| |||| Sbjct: 65008 ccctcttcgtcaagatcgatgtcg 65031
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia Length = 1923819 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 128 ttcgtcaagatcgacgtcgacgag 151 ||||| |||||||||||||||||| Sbjct: 1239147 ttcgtgaagatcgacgtcgacgag 1239124
>gb|AF153282.1|AF153282 Methylocystis sp. WI14 soluble methane monooxygenase gene cluster, partial sequence Length = 5253 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 tcaagatcgacgtcgacgag 151 |||||||||||||||||||| Sbjct: 2821 tcaagatcgacgtcgacgag 2840
>gb|AC154749.2| Mus musculus BAC clone RP24-399C21 from 17, complete sequence Length = 155483 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 tgtagtttgttactgaaaaa 590 |||||||||||||||||||| Sbjct: 89864 tgtagtttgttactgaaaaa 89845
>gb|AY111386.1| Zea mays CL49128_1 mRNA sequence Length = 842 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 58 ctggtgcgggccctgccgcttcatcgagcccg 89 |||||||||||| |||||| |||||| ||||| Sbjct: 572 ctggtgcgggccgtgccgcctcatcgcgcccg 541
>gb|AC153960.3| Mus musculus 10 BAC RP24-210O10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 162022 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 aggatgagcttgacaggaag 268 |||||||||||||||||||| Sbjct: 121193 aggatgagcttgacaggaag 121212
>emb|AL732350.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0101F08, complete sequence Length = 63897 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 58 ctggtgcgggccctgccgcttcatcgagcccg 89 |||||||||||| |||||| |||||| ||||| Sbjct: 2632 ctggtgcgggccgtgccgcctcatcgcgcccg 2663
>emb|AL732351.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0103C06, complete sequence Length = 104146 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 58 ctggtgcgggccctgccgcttcatcgagcccg 89 |||||||||||| |||||| |||||| ||||| Sbjct: 84939 ctggtgcgggccgtgccgcctcatcgcgcccg 84970
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 gtcgacgagctcgcggaggt 162 |||||||||||||||||||| Sbjct: 1333336 gtcgacgagctcgcggaggt 1333317
>gb|U81594.1|MSU81594 Methylocystis sp. M soluble methane monooxygenase gene cluster mmoX, mmoY, mmoB, mmoZ and mmoC genes, complete cds Length = 5873 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 tcaagatcgacgtcgacgag 151 |||||||||||||||||||| Sbjct: 3385 tcaagatcgacgtcgacgag 3404
>emb|AM183298.1| Oryza sativa (japonica cultivar-group) chloroplast partial mRNA for thioredoxin x (trx-x gene) Length = 348 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 58 ctggtgcgggccctgccgcttcatcgagcccg 89 |||||||||||| |||||| |||||| ||||| Sbjct: 90 ctggtgcgggccgtgccgcctcatcgcgcccg 121
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 gcctcccgcttcgccgacgccctc 127 ||||||| |||||||||||||||| Sbjct: 17593558 gcctcccacttcgccgacgccctc 17593535
>dbj|AP006116.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT40C04, TM0199, complete sequence Length = 123325 Score = 40.1 bits (20), Expect = 8.7 Identities = 44/52 (84%) Strand = Plus / Minus Query: 36 tggtgatcgacttctccgcctcctggtgcgggccctgccgcttcatcgagcc 87 ||||||| || ||||| || || ||||||||||| ||||| ||||| ||||| Sbjct: 62142 tggtgatagatttctctgcgtcgtggtgcgggccgtgccggttcatagagcc 62091
>emb|X88892.1|CJVPI4YEL C.jacchus intron 4 of visual pigment gene (yellow allele) Length = 1821 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 tcccagtggcaagaggctcc 369 |||||||||||||||||||| Sbjct: 873 tcccagtggcaagaggctcc 854
>gb|AY142333.1|AY142332S2 Callithrix geoffroyi 556nm X-linked opsin gene, exon 4 Length = 1322 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 tcccagtggcaagaggctcc 369 |||||||||||||||||||| Sbjct: 1039 tcccagtggcaagaggctcc 1020 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,108,287 Number of Sequences: 3902068 Number of extensions: 5108287 Number of successful extensions: 97708 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96764 Number of HSP's gapped (non-prelim): 942 length of query: 640 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 617 effective length of database: 17,143,297,704 effective search space: 10577414683368 effective search space used: 10577414683368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
