ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal34o18 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ234421.1|HVU234421 Hordeum vulgare partial mRNA; clone cMWG0682 Length = 577 Score = 920 bits (464), Expect = 0.0 Identities = 485/488 (99%), Gaps = 3/488 (0%) Strand = Plus / Plus Query: 3 acgcccaagccgagaagccaa-gcactggacgggcaacctacccaaagtcttcgtgatag 61 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 89 acgcccaagccgagaagccaaagcactggacgggcaacctacccaaagtcttcgtgatag 148 Query: 62 gcagcgtggtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgt 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 149 gcagcgtggtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgt 208 Query: 122 tcggaacggcaagaaggtttgcaggaccaggaagaagatagg-aaccaaacatccgcgcc 180 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 209 tcggaacggcaagaaggtttgcaggaccaggaagaagatagggaaccaaacatccgcgcc 268 Query: 181 tatcaccgcaatgccatgcacattcattctgatgcacaaccgagcgacgctatccggtat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 269 tatcaccgcaatgccatgcacattcattctgatgcacaaccgagcgacgctatccggtat 328 Query: 241 tatctttggtcctgagacgctcgcgcttgcagatgaggacatagggacgaggtttgctcg 300 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 329 tatctt-ggtcctgagacgctcgcgcttgcagatgaggacatagggacgaggtttgctcg 387 Query: 301 tggtagaaagcatctgtaagcaggcttgtgtacatactgctgtagctgcagtctgtgaag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 tggtagaaagcatctgtaagcaggcttgtgtacatactgctgtagctgcagtctgtgaag 447 Query: 361 ctgagagctgattaggacatagaaccatggtgataatgagactgattggattgttggatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 ctgagagctgattaggacatagaaccatggtgataatgagactgattggattgttggatg 507 Query: 421 ctgagacataaccatcatcattaatgatgatgtactgcaatgaataaggctcttattttg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 508 ctgagacataaccatcatcattaatgatgatgtactgcaatgaataaggctcttattttg 567 Query: 481 gaggtgct 488 |||||||| Sbjct: 568 gaggtgct 575 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 catcatcattaatgatgatg 452 |||||||||||||||||||| Sbjct: 539 catcatcattaatgatgatg 520
>ref|XM_471067.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1203 Score = 48.1 bits (24), Expect = 0.028 Identities = 45/52 (86%) Strand = Plus / Plus Query: 109 aaggctctcgtgttcggaacggcaagaaggtttgcaggaccaggaagaagat 160 ||||||||| | || || ||||| || |||||||||||||||||||| |||| Sbjct: 1150 aaggctctcatatttggtacggcgaggaggtttgcaggaccaggaaggagat 1201
>gb|BT016568.1| Zea mays clone Contig401 mRNA sequence Length = 845 Score = 48.1 bits (24), Expect = 0.028 Identities = 24/24 (100%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgac 93 |||||||||||||||||||||||| Sbjct: 136 gtcgccctggcttgcaccttcgac 159
>dbj|AK061898.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H01, full insert sequence Length = 1620 Score = 48.1 bits (24), Expect = 0.028 Identities = 45/52 (86%) Strand = Plus / Plus Query: 109 aaggctctcgtgttcggaacggcaagaaggtttgcaggaccaggaagaagat 160 ||||||||| | || || ||||| || |||||||||||||||||||| |||| Sbjct: 1192 aaggctctcatatttggtacggcgaggaggtttgcaggaccaggaaggagat 1243
>gb|DQ427307.1| Sorghum bicolor voucher PI585454 locus CSU535 genomic sequence Length = 689 Score = 48.1 bits (24), Expect = 0.028 Identities = 69/84 (82%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccagga 153 || |||||||||||||| |||||| Sbjct: 136 gcgagaaggtttgcagggccagga 159
>gb|DQ427306.1| Sorghum bicolor voucher PI267539 locus CSU535 genomic sequence Length = 689 Score = 48.1 bits (24), Expect = 0.028 Identities = 69/84 (82%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccagga 153 || |||||||||||||| |||||| Sbjct: 136 gcgagaaggtttgcagggccagga 159
>gb|DQ427305.1| Sorghum bicolor voucher PI267408 locus CSU535 genomic sequence Length = 689 Score = 48.1 bits (24), Expect = 0.028 Identities = 69/84 (82%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccagga 153 || |||||||||||||| |||||| Sbjct: 136 gcgagaaggtttgcagggccagga 159
>gb|DQ427304.1| Sorghum bicolor voucher PI221607 locus CSU535 genomic sequence Length = 689 Score = 48.1 bits (24), Expect = 0.028 Identities = 69/84 (82%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccagga 153 || |||||||||||||| |||||| Sbjct: 136 gcgagaaggtttgcagggccagga 159
>gb|DQ427303.1| Sorghum bicolor voucher PI152702 locus CSU535 genomic sequence Length = 689 Score = 48.1 bits (24), Expect = 0.028 Identities = 69/84 (82%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccagga 153 || |||||||||||||| |||||| Sbjct: 136 gcgagaaggtttgcagggccagga 159
>gb|DQ427302.1| Sorghum bicolor voucher NSL92371 locus CSU535 genomic sequence Length = 689 Score = 48.1 bits (24), Expect = 0.028 Identities = 69/84 (82%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccagga 153 || |||||||||||||| |||||| Sbjct: 136 gcgagaaggtttgcagggccagga 159
>gb|DQ427301.1| Sorghum bicolor voucher NSL87902b locus CSU535 genomic sequence Length = 689 Score = 48.1 bits (24), Expect = 0.028 Identities = 69/84 (82%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccagga 153 || |||||||||||||| |||||| Sbjct: 136 gcgagaaggtttgcagggccagga 159
>gb|DQ427300.1| Sorghum bicolor voucher NSL87902a locus CSU535 genomic sequence Length = 689 Score = 48.1 bits (24), Expect = 0.028 Identities = 69/84 (82%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccagga 153 || |||||||||||||| |||||| Sbjct: 136 gcgagaaggtttgcagggccagga 159
>gb|DQ427299.1| Sorghum bicolor voucher NSL87666 locus CSU535 genomic sequence Length = 689 Score = 48.1 bits (24), Expect = 0.028 Identities = 69/84 (82%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccagga 153 || |||||||||||||| |||||| Sbjct: 136 gcgagaaggtttgcagggccagga 159
>gb|DQ427298.1| Sorghum bicolor voucher NSL77217 locus CSU535 genomic sequence Length = 689 Score = 48.1 bits (24), Expect = 0.028 Identities = 69/84 (82%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccagga 153 || |||||||||||||| |||||| Sbjct: 136 gcgagaaggtttgcagggccagga 159
>gb|DQ427297.1| Sorghum bicolor voucher NSL77034 locus CSU535 genomic sequence Length = 689 Score = 48.1 bits (24), Expect = 0.028 Identities = 69/84 (82%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccagga 153 || |||||||||||||| |||||| Sbjct: 136 gcgagaaggtttgcagggccagga 159
>gb|DQ427296.1| Sorghum bicolor voucher NSL56174 locus CSU535 genomic sequence Length = 689 Score = 48.1 bits (24), Expect = 0.028 Identities = 69/84 (82%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccagga 153 || |||||||||||||| |||||| Sbjct: 136 gcgagaaggtttgcagggccagga 159
>gb|DQ427295.1| Sorghum bicolor voucher NSL56003 locus CSU535 genomic sequence Length = 689 Score = 48.1 bits (24), Expect = 0.028 Identities = 69/84 (82%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccagga 153 || |||||||||||||| |||||| Sbjct: 136 gcgagaaggtttgcagggccagga 159
>gb|DQ427294.1| Sorghum bicolor voucher NSL55243 locus CSU535 genomic sequence Length = 689 Score = 48.1 bits (24), Expect = 0.028 Identities = 69/84 (82%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccagga 153 || |||||||||||||| |||||| Sbjct: 136 gcgagaaggtttgcagggccagga 159
>gb|DQ427293.1| Sorghum bicolor voucher NSL51365 locus CSU535 genomic sequence Length = 689 Score = 48.1 bits (24), Expect = 0.028 Identities = 69/84 (82%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccagga 153 || |||||||||||||| |||||| Sbjct: 136 gcgagaaggtttgcagggccagga 159
>gb|DQ427292.1| Sorghum bicolor voucher NSL51030 locus CSU535 genomic sequence Length = 689 Score = 48.1 bits (24), Expect = 0.028 Identities = 69/84 (82%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccagga 153 || |||||||||||||| |||||| Sbjct: 136 gcgagaaggtttgcagggccagga 159
>gb|DQ427291.1| Sorghum bicolor voucher NSL50875 locus CSU535 genomic sequence Length = 689 Score = 48.1 bits (24), Expect = 0.028 Identities = 69/84 (82%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccagga 153 || |||||||||||||| |||||| Sbjct: 136 gcgagaaggtttgcagggccagga 159
>gb|DQ427290.1| Sorghum bicolor voucher BTx623 locus CSU535 genomic sequence Length = 689 Score = 48.1 bits (24), Expect = 0.028 Identities = 69/84 (82%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccagga 153 || |||||||||||||| |||||| Sbjct: 136 gcgagaaggtttgcagggccagga 159
>emb|AJ698084.1| Oryza sativa (japonica cultivar-group) mRNA for membrane related protein (mrp1 gene) Length = 1366 Score = 48.1 bits (24), Expect = 0.028 Identities = 45/52 (86%) Strand = Plus / Plus Query: 109 aaggctctcgtgttcggaacggcaagaaggtttgcaggaccaggaagaagat 160 ||||||||| | || || ||||| || |||||||||||||||||||| |||| Sbjct: 1195 aaggctctcatatttggtacggcgaggaggtttgcaggaccaggaaggagat 1246
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.028 Identities = 45/52 (86%) Strand = Plus / Minus Query: 109 aaggctctcgtgttcggaacggcaagaaggtttgcaggaccaggaagaagat 160 ||||||||| | || || ||||| || |||||||||||||||||||| |||| Sbjct: 1136407 aaggctctcatatttggtacggcgaggaggtttgcaggaccaggaaggagat 1136356
>dbj|AK065035.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H07, full insert sequence Length = 1869 Score = 48.1 bits (24), Expect = 0.028 Identities = 45/52 (86%) Strand = Plus / Plus Query: 109 aaggctctcgtgttcggaacggcaagaaggtttgcaggaccaggaagaagat 160 ||||||||| | || || ||||| || |||||||||||||||||||| |||| Sbjct: 1437 aaggctctcatatttggtacggcgaggaggtttgcaggaccaggaaggagat 1488
>emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020P07, complete sequence Length = 167895 Score = 48.1 bits (24), Expect = 0.028 Identities = 45/52 (86%) Strand = Plus / Minus Query: 109 aaggctctcgtgttcggaacggcaagaaggtttgcaggaccaggaagaagat 160 ||||||||| | || || ||||| || |||||||||||||||||||| |||| Sbjct: 78789 aaggctctcatatttggtacggcgaggaggtttgcaggaccaggaaggagat 78738
>gb|DQ427308.1| Sorghum propinquum locus CSU535 genomic sequence Length = 696 Score = 44.1 bits (22), Expect = 0.43 Identities = 67/82 (81%) Strand = Plus / Plus Query: 70 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 129 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 130 gcaagaaggtttgcaggaccag 151 || |||||||||||||| |||| Sbjct: 136 gcgagaaggtttgcagggccag 157
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 422 tgagacataaccatcatcattaatg 446 |||||||||||||||| |||||||| Sbjct: 4407081 tgagacataaccatcaccattaatg 4407105 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 422 tgagacataaccatcatcattaatg 446 |||||||||||||||| |||||||| Sbjct: 2270129 tgagacataaccatcaccattaatg 2270153
>gb|AC005770.3| Arabidopsis thaliana chromosome 2 clone T7F6 map CIC10A06, complete sequence Length = 96827 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 390 gtgataatgagactgattggattgt 414 ||||||| ||||||||||||||||| Sbjct: 18460 gtgataaagagactgattggattgt 18436
>gb|AF051802.1|AF051802 Feline immunodeficiency virus isolate FIV-FcaWg1-2 pol polyprotein (pol) gene, partial cds Length = 476 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 tgcaggaccaggaagaagata 161 ||||||||||||||||||||| Sbjct: 254 tgcaggaccaggaagaagata 274
>gb|AC115033.9| Mus musculus chromosome 15, clone RP24-269A7, complete sequence Length = 147113 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 ccatcatcattaatgatgat 451 |||||||||||||||||||| Sbjct: 135891 ccatcatcattaatgatgat 135910
>gb|AC123683.6| Mus musculus chromosome 9, clone RP23-296I6, complete sequence Length = 189100 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 atactgctgtagctgcagtctgtg 357 ||||||||||||||| |||||||| Sbjct: 70990 atactgctgtagctggagtctgtg 71013
>gb|AC101775.10| Mus musculus chromosome 19, clone RP24-116B5, complete sequence Length = 167945 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 gtggtagaaagcatctgtaa 319 |||||||||||||||||||| Sbjct: 28418 gtggtagaaagcatctgtaa 28399
>gb|AC006024.1| Homo sapiens PAC clone RP5-1166G19 from 7, complete sequence Length = 90583 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgcacattcattctgatgca 216 |||||||||||||||||||| Sbjct: 87496 tgcacattcattctgatgca 87477
>emb|AL591069.5| Human DNA sequence from clone RP11-72O9 on chromosome 6q25.2-26 Contains the 3' end of the SSLC22A3 gene for solute carrier family 22 (extraneuronal monoamine transporter), member 3 (extraneuronal monoamine transporter solute carrier family 22 (organic cation transporter), member 3(EMT, EMTh, OCT3)), the APOARGC gene for apolipoprotein (a) related gene C and a plasminogen (PLG) pseudogene, complete sequence Length = 162083 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 aagctgagagctgattagga 377 |||||||||||||||||||| Sbjct: 42566 aagctgagagctgattagga 42585
>emb|AL359714.18| Human DNA sequence from clone RP11-22A15 on chromosome 6 Contains part of the BAI3 gene for brain-specific angiogenesis inhibitor 3, complete sequence Length = 156129 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 gcttgcagatgaggacatag 284 |||||||||||||||||||| Sbjct: 141077 gcttgcagatgaggacatag 141096
>gb|AC159978.4| Mus musculus chromosome 15, clone RP24-173F4, complete sequence Length = 113570 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 ccatcatcattaatgatgat 451 |||||||||||||||||||| Sbjct: 62291 ccatcatcattaatgatgat 62272
>gb|AC079441.37| Mus musculus strain C57BL/6J clone rp23-349b16 map 17, complete sequence Length = 223005 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 tgtagctgcagtctgtgaagctga 364 ||||||||||||||| |||||||| Sbjct: 126398 tgtagctgcagtctgggaagctga 126421
>gb|AC022679.9| Homo sapiens chromosome 8, clone RP11-386G21, complete sequence Length = 160766 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 tgccatgcacattcattctg 211 |||||||||||||||||||| Sbjct: 75074 tgccatgcacattcattctg 75055
>gb|AC148317.3| Pan troglodytes BAC clone CH251-519K22 from chromosome 7, complete sequence Length = 154065 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgcacattcattctgatgca 216 |||||||||||||||||||| Sbjct: 65391 tgcacattcattctgatgca 65372
>ref|NM_064268.1| Caenorhabditis elegans Serpentine Receptor, class H family member (srh-67) (srh-67) mRNA, complete cds Length = 1026 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ggcaagaaggtttgcaggac 148 |||||||||||||||||||| Sbjct: 797 ggcaagaaggtttgcaggac 778
>ref|NM_064267.1| Caenorhabditis elegans Serpentine Receptor, class H family member (srh-68) (srh-68) mRNA, complete cds Length = 1026 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ggcaagaaggtttgcaggac 148 |||||||||||||||||||| Sbjct: 797 ggcaagaaggtttgcaggac 778
>ref|XM_393538.2| PREDICTED: Apis mellifera similar to ENSANGP00000012260 (LOC410052), partial mRNA Length = 6805 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 ttgttggatgctgagacata 430 |||||||||||||||||||| Sbjct: 800 ttgttggatgctgagacata 781
>ref|XM_231251.3| PREDICTED: Rattus norvegicus G protein-coupled receptor 21 (predicted) (Gpr21_predicted), mRNA Length = 3247 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tgaagctgagagctgattag 375 |||||||||||||||||||| Sbjct: 346 tgaagctgagagctgattag 327
>gb|AY107844.1| Zea mays PCO146552 mRNA sequence Length = 823 Score = 40.1 bits (20), Expect = 6.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 82 tgcaccttcgacaaggggctactgaccaaggctctc 117 |||||| | ||| ||||||| ||||||||||||||| Sbjct: 421 tgcacccttgaccaggggctcctgaccaaggctctc 456
>emb|Z81124.1|CET21B4 Caenorhabditis elegans Cosmid T21B4, complete sequence Length = 37797 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ggcaagaaggtttgcaggac 148 |||||||||||||||||||| Sbjct: 19787 ggcaagaaggtttgcaggac 19768 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ggcaagaaggtttgcaggac 148 |||||||||||||||||||| Sbjct: 18104 ggcaagaaggtttgcaggac 18085
>emb|CT009715.15| Mouse DNA sequence from clone RP23-85E24 on chromosome 17, complete sequence Length = 178948 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 tgtagctgcagtctgtgaagctga 364 ||||||||||||||| |||||||| Sbjct: 6507 tgtagctgcagtctgggaagctga 6530
>emb|Y13298.1|HSY13298 Homo sapiens GDP dissociation inhibitor beta pseudogene Length = 3628 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tgcacattcattctgatgca 216 |||||||||||||||||||| Sbjct: 197 tgcacattcattctgatgca 178
>dbj|AP000829.4| Homo sapiens genomic DNA, chromosome 18p clone:RP11-732L14, complete sequences Length = 186383 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 ggtattatctttggtcctga 255 |||||||||||||||||||| Sbjct: 174515 ggtattatctttggtcctga 174496 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,666,446 Number of Sequences: 3902068 Number of extensions: 3666446 Number of successful extensions: 64312 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64203 Number of HSP's gapped (non-prelim): 106 length of query: 498 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 476 effective length of database: 17,147,199,772 effective search space: 8162067091472 effective search space used: 8162067091472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
