>SHPI_STAHY (Q08002) Neutral metalloprotease precursor (EC 3.4.24.-)|
          Length = 438

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 284 DYHHLILSHSDITTHAVSSSPSRLQDNTFKASTLPNM 174
           D H  I+++ DI  +A  SS   L+ N FK ST+ +M
Sbjct: 27  DAHTYIINNEDINKNAQESSIGTLKQNNFKQSTIDSM 63

>FOR3_SCHPO (O94532) Formin-3|
          Length = 1461

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 20/75 (26%), Positives = 31/75 (41%)
 Frame = -2

Query: 269 ILSHSDITTHAVSSSPSRLQDNTFKASTLPNMPLLLSIHFLLDIELPSRAVIRKPIPPPR 90
           ILS S I     + S +   D +F  S + + P  L       +E   + +++ P PPP 
Sbjct: 678 ILSGSGIPVRVHTPSKTEDLDESFSGSEISSSPSPLLPDVSDTVEEQQKLLLKSPPPPPP 737

Query: 89  GAQFAGNRPWPMPAP 45
                   P P+P P
Sbjct: 738 AVIVPTPAPAPIPVP 752

>ADC_CLOAB (P23670) Acetoacetate decarboxylase (EC 4.1.1.4) (ADC) (AAD)|
          Length = 244

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -2

Query: 257 SDITTHAVSSSPSRLQDNTFKASTLPNMP---LLLSIHFLLDIELPSRAVI 114
           +D+T H   + P+RLQ      + L ++P   ++ S H L DI LP   VI
Sbjct: 189 TDVTVHEAWTGPTRLQLFDHAMAPLNDLPVKEIVSSSHILADIILPRAEVI 239

>RAD50_SULAC (O33600) DNA double-strand break repair rad50 ATPase|
          Length = 886

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 323 HNDYQHTVSKKKK--DYHHLILSHSDITTHAVSSSPSRLQDNTFKASTL 183
           H ++++   K+K+  DYH   L +SDI    +     RL +   K S L
Sbjct: 533 HQEFENIAEKEKELIDYHEEYLKNSDILEEDIQEQEQRLNELNSKLSEL 581

>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing|
           mediator of retinoic acid and thyroid hormone receptor)
           (SMRT) (SMRTe) (Thyroid-,
           retinoic-acid-receptor-associated corepressor) (T3
           receptor-associating factor) (TRAC)
          Length = 2472

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 12/47 (25%)
 Frame = -2

Query: 122 AVIRKPIPPPRGAQFAGNRPWPM--------PAPSHILP----IWTR 18
           A  + P+PPP     A   P P+        P PSH LP    +WTR
Sbjct: 771 AATQPPVPPPEEPAVAPAEPSPVPDASGPPSPEPSHHLPHPRLLWTR 817

>SMN_HUMAN (Q16637) Survival motor neuron protein (Component of gems 1)|
           (Gemin-1)
          Length = 294

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
 Frame = -2

Query: 107 PIPPPR------GAQFAGNRPWPMPAPSHILPIW 24
           P+P PR      G +F G  P P P P H+L  W
Sbjct: 199 PMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCW 232

>AOC2_HUMAN (O75106) Retina-specific copper amine oxidase precursor (EC|
           1.4.3.6) (RAO) (Amine oxidase [copper-containing])
          Length = 756

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 119 VIRKPIPPPRGAQFAGNRPWPMPAP 45
           V+R P+PPP GA    +R  P P P
Sbjct: 282 VVRVPLPPPNGASSLRSRNSPGPLP 306

>KCNKF_RAT (Q8R5I0) Potassium channel subfamily K member 15 (Acid-sensitive|
           potassium channel protein TASK-5) (TWIK-related
           acid-sensitive K(+) channel 5) (rTASK-5)
          Length = 318

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 167 LLSIHFLLDIELPSRAVIRKPIPPPRGAQFAGNRPWPMPAPSHILPIWTR 18
           L+ + FL   E P RA +R+     RGA  +  R   +P P H L  W R
Sbjct: 241 LVVLRFLASAEAPERAALRRASVFRRGAPESRVR---IPYPFHPLETWAR 287

>CASC3_MOUSE (Q8K3W3) Protein CASC3 (Cancer susceptibility candidate gene 3|
           protein homolog) (Metastatic lymph node protein 51
           homolog) (MLN 51 protein homolog) (Barentsz protein)
           (Btz)
          Length = 697

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = +1

Query: 31  GRICEGA--GIGQGLFPAN*APRGGGMGLRITARDGNSMSRRKWMERRRGMFG-RVEALK 201
           G  C G+  G G G  P+    RGGG+ LR     G   +     E   GM G  V +  
Sbjct: 32  GGSCSGSVGGGGSGSLPSQRGGRGGGLHLRRVESGGAKSAEESECESEDGMEGDAVLSDY 91

Query: 202 VLS*SLEGEED 234
             +   EGEED
Sbjct: 92  ESAEDSEGEED 102

>MKRN3_HUMAN (Q13064) Makorin-3 (Zinc finger protein 127) (RING finger protein|
           63)
          Length = 507

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 92  RGAQFAGNRPWPMPAPSHILPIWTRKYI 9
           R A  +G   WP P PS    IWT++ I
Sbjct: 73  RPAPASGGGAWPSPLPSRSSGIWTKQII 100

>CO020_HUMAN (Q9H611) Protein C15orf20|
          Length = 266

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 134 LPSRAVIRKPIPPPRGAQFAGNRP-WPMPAPSHILP 30
           +P   ++++P+ P  GA+ +   P WP+P     LP
Sbjct: 166 VPDTTLVKRPVEPQAGAEPSTEAPRWPLPVKRLSLP 201

>CASC3_RAT (Q8K3X0) Protein CASC3 (Cancer susceptibility candidate gene 3|
           protein homolog) (Barentsz protein) (Btz)
          Length = 699

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +1

Query: 31  GRICEGA--GIGQGLFPAN*APRGGGMGLRITARDGNSMSRRKWMERRRGMFG 183
           G  C G+  G G G  P+    RGGG+ LR     G   +     E   GM G
Sbjct: 32  GGSCSGSAGGGGSGSLPSQRGGRGGGLHLRRVESGGAKSAEESECESEDGMEG 84

>Y117_BORBU (O51144) Hypothetical UPF0073 protein BB0117|
          Length = 233

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 264 QDEMVIIFLFFGYSM-LIIIMSKLFIEYKK*FRCKK 368
           +D  V++FL +G+SM L+ +MS L+  + K  + KK
Sbjct: 54  KDLHVVVFLIYGFSMTLLYVMSTLYHIFPKGSKIKK 89

>RIN3_HUMAN (Q8TB24) Ras and Rab interactor 3 (Ras interaction/interference|
           protein 3)
          Length = 984

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = -2

Query: 212 QDNTFKASTLPNMPLLLSIHFLLDIELPSRAVIRKPIPPPRGAQFAGNRPWPMPAP 45
           QD   KAS   +MP           ELP R   + P+PPPR  + +      +PAP
Sbjct: 434 QDTEVKASDPHSMP-----------ELP-RTAKQPPVPPPRKKRISRQLASTLPAP 477

>GFRA4_RAT (Q9EPI2) GDNF family receptor alpha-4 precursor (GFR-alpha-4)|
           (Persephin receptor)
          Length = 273

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 68  CSPQIELRVVEEWACVSQHEMATQCQGGSGWRGEEAC 178
           C    E    +E     + E   QC G +GWRG  +C
Sbjct: 37  CVEAAEACTADEQCQQLRSEYVAQCLGRAGWRGPGSC 73

>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)|
          Length = 705

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -2

Query: 218 RLQDNTFKASTLPNMPLLLSIHFLLDIELPSRAVIRKPIPPPRGAQFAGNRPWP 57
           RL D+ F A+ LPN        ++ D++ P      +P PPP GA   G  P P
Sbjct: 7   RLSDSNFMAN-LPN-------GYMTDLQRP------QPPPPPPGAHSPGATPGP 46

>Y1964_AQUAE (O67776) Hypothetical zinc metalloprotease aq_1964 (EC 3.4.24.-)|
          Length = 429

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 51  WHRPRPVPRKLSSAWWRNGLA 113
           W R RP+P K    W R GLA
Sbjct: 390 WLRGRPLPEKFKEYWQRVGLA 410

>KRAF1_CAEEL (Q07292) Raf homolog serine/threonine-protein kinase (EC 2.7.11.1)|
           (Abnormal cell lineage protein 45)
          Length = 813

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -2

Query: 194 ASTLPNMPLLLSIHFLLDIELPSRAVIRKPIPPPRGAQFAGNRPWPM 54
           AS LP   L +   +L  +     A++R+   PP+      N  W M
Sbjct: 148 ASRLPGNELWVHSEYLNTVSSIKHAIVRRTFIPPKSCDVCNNPIWMM 194

>RLP7_KLULA (P32102) Ribosome biogenesis protein RLP7|
          Length = 318

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -1

Query: 261 TLGHNNSRCVFF--PFKASRQHLQGFNS 184
           TLG N S+C FF  PFK +R+ + GF +
Sbjct: 252 TLGENFSKCTFFLLPFKLNRE-VSGFGA 278


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,598,753
Number of Sequences: 219361
Number of extensions: 1202883
Number of successful extensions: 4092
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4076
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)