| Clone Name | baal35d13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC089993.2| Bos taurus clone RP42-553M7, complete sequence Length = 162859 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 256 gagtgtgacaggatgagatggt 277 |||||||||||||||||||||| Sbjct: 84443 gagtgtgacaggatgagatggt 84464
>gb|DP000008.1| Bos taurus target 1 genomic scaffold Length = 2072671 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 256 gagtgtgacaggatgagatggt 277 |||||||||||||||||||||| Sbjct: 1450949 gagtgtgacaggatgagatggt 1450970
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 146 ggaggaagtggatggagaggag 167 |||||||||||||||||||||| Sbjct: 23514913 ggaggaagtggatggagaggag 23514892
>gb|AC092780.6| Oryza sativa chromosome 3 BAC OSJNBb0079B16 genomic sequence, complete sequence Length = 144383 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 146 ggaggaagtggatggagaggag 167 |||||||||||||||||||||| Sbjct: 67344 ggaggaagtggatggagaggag 67365
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 146 ggaggaagtggatggagaggag 167 |||||||||||||||||||||| Sbjct: 23507941 ggaggaagtggatggagaggag 23507920
>gb|AC162806.4| Mus musculus BAC clone RP23-95E13 from chromosome 9, complete sequence Length = 165949 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 330 ttattcatagaatataaaaaat 351 |||||||||||||||||||||| Sbjct: 158973 ttattcatagaatataaaaaat 158994
>emb|CT030181.13| Mouse DNA sequence from clone RP23-115A18 on chromosome 9, complete sequence Length = 281479 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 330 ttattcatagaatataaaaaat 351 |||||||||||||||||||||| Sbjct: 233278 ttattcatagaatataaaaaat 233257
>gb|AC146316.3| Microcebus murinus clone CH257-437M14, complete sequence Length = 274705 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 atagaatataaaaaataattt 356 ||||||||||||||||||||| Sbjct: 176267 atagaatataaaaaataattt 176287
>gb|AC183990.2| Pan troglodytes BAC clone CH251-134O11 from chromosome 6, complete sequence Length = 166671 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 atagaatataaaaaataattt 356 ||||||||||||||||||||| Sbjct: 110185 atagaatataaaaaataattt 110165
>gb|AC144902.2| Mus musculus BAC clone RP23-400D9 from chromosome 5, complete sequence Length = 204858 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 gaggaagtggatggagaggag 167 ||||||||||||||||||||| Sbjct: 159551 gaggaagtggatggagaggag 159531
>ref|XM_725807.1| Plasmodium yoelii yoelii str. 17XNL chloroquine resistance marker protein (PY02945) partial mRNA Length = 19911 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 329 gttattcatagaatataaaaaataa 353 |||||||||||||||||||| |||| Sbjct: 6018 gttattcatagaatataaaacataa 5994
>gb|AC183671.2| Pan troglodytes BAC clone CH251-545A14 from chromosome 6, complete sequence Length = 222567 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 atagaatataaaaaataattt 356 ||||||||||||||||||||| Sbjct: 210781 atagaatataaaaaataattt 210801
>emb|AL133322.13| Human DNA sequence from clone RP1-257L16 on chromosome 6q12-13, complete sequence Length = 172624 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 atagaatataaaaaataattt 356 ||||||||||||||||||||| Sbjct: 120964 atagaatataaaaaataattt 120984
>emb|AL035209.1|HS7H11 Human DNA sequence from clone XX-D7H11 on chromosome 1q32.2-32.3 Contains the 3' end of the MCP gene for membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen) and the 3' end of a novel gene, complete sequence Length = 77551 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 153 gtggatggagaggagaagaggcatg 177 ||||||| ||||||||||||||||| Sbjct: 35522 gtggatgcagaggagaagaggcatg 35546
>gb|AC183774.2| Pan troglodytes BAC clone CH251-50B16 from chromosome 6, complete sequence Length = 169226 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 atagaatataaaaaataattt 356 ||||||||||||||||||||| Sbjct: 6442 atagaatataaaaaataattt 6422
>dbj|AK125868.1| Homo sapiens cDNA FLJ43880 fis, clone TESTI4009022 Length = 3526 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 153 gtggatggagaggagaagaggcatg 177 ||||||| ||||||||||||||||| Sbjct: 2147 gtggatgcagaggagaagaggcatg 2171
>gb|AE012269.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 177 of 460 of the complete genome Length = 11138 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 gagctggcatcggccaaggcc 67 ||||||||||||||||||||| Sbjct: 9757 gagctggcatcggccaaggcc 9737
>gb|AC084393.20| Homo sapiens 12q BAC RP11-453E3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 182489 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 153 gtggatggagaggagaagaggcatg 177 ||||||| ||||||||||||||||| Sbjct: 72932 gtggatgcagaggagaagaggcatg 72956
>ref|NM_001039568.1| Homo sapiens hypothetical protein LOC148696 (LOC148696), mRNA Length = 3526 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 153 gtggatggagaggagaagaggcatg 177 ||||||| ||||||||||||||||| Sbjct: 2147 gtggatgcagaggagaagaggcatg 2171
>gb|DP000004.1| Lemur catta target 1 genomic scaffold Length = 1399362 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 atagaatataaaaaataattt 356 ||||||||||||||||||||| Sbjct: 681274 atagaatataaaaaataattt 681294
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 47 gagctggcatcggccaaggcc 67 ||||||||||||||||||||| Sbjct: 3080749 gagctggcatcggccaaggcc 3080769
>gb|AC154458.2| Mus musculus BAC clone RP24-162I9 from chromosome 17, complete sequence Length = 183027 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 aggaggaagtggatggagaggagaa 169 ||||||||||||| ||||||||||| Sbjct: 120933 aggaggaagtggagggagaggagaa 120957
>gb|AC123542.4| Lemur catta clone LB2-136L13, complete sequence Length = 158703 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 atagaatataaaaaataattt 356 ||||||||||||||||||||| Sbjct: 24710 atagaatataaaaaataattt 24730
>emb|BX001056.6| Zebrafish DNA sequence from clone CH211-15P9 in linkage group 11, complete sequence Length = 150229 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 333 ttcatagaatataaaaaataatttc 357 |||||||||| |||||||||||||| Sbjct: 56884 ttcatagaatttaaaaaataatttc 56860
>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold Length = 1595145 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 atagaatataaaaaataattt 356 ||||||||||||||||||||| Sbjct: 747758 atagaatataaaaaataattt 747778
>emb|AL805950.11| Mouse DNA sequence from clone RP23-134I15 on chromosome 2, complete sequence Length = 237337 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 143 caaggaggaagtggatggagaggagaaga 171 |||||||||||||| || ||||||||||| Sbjct: 147325 caaggaggaagtgggtgaagaggagaaga 147353
>gb|AC137120.22| Mus musculus chromosome 15, clone RP23-255G14, complete sequence Length = 203811 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 ggtgttgtcttgaagccttg 220 |||||||||||||||||||| Sbjct: 37419 ggtgttgtcttgaagccttg 37438
>gb|AY796304.1| Homo sapiens transforming growth factor, beta receptor III (betaglycan, 300kDa) (TGFBR3) gene, complete cds Length = 226174 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gcaagttattcatagaatat 344 |||||||||||||||||||| Sbjct: 147195 gcaagttattcatagaatat 147214
>ref|XM_419369.1| PREDICTED: Gallus gallus similar to MGC53127 protein (LOC421304), mRNA Length = 2601 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 aagtggatggagaggagaag 170 |||||||||||||||||||| Sbjct: 389 aagtggatggagaggagaag 408
>gb|AC127554.4| Mus musculus BAC clone RP24-323K23 from chromosome 8, complete sequence Length = 178416 Score = 40.1 bits (20), Expect = 5.0 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 146 ggaggaagtggatggagaggagaagagg 173 ||||||||||||| |||||||||||||| Sbjct: 73239 ggaggaagtggat-gagaggagaagagg 73213
>gb|AF335282.1| Lardizabala funaria tRNA-Leu (trnL) gene, partial sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast gene for chloroplast product Length = 903 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ttcatagaatataaaaaata 352 |||||||||||||||||||| Sbjct: 302 ttcatagaatataaaaaata 283
>gb|AC121854.2| Mus musculus BAC clone RP24-97A15 from 7, complete sequence Length = 185164 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 atagaatataaaaaataatt 355 |||||||||||||||||||| Sbjct: 50166 atagaatataaaaaataatt 50147
>gb|AF047651.1| Caenorhabditis elegans cosmid C05D2, complete sequence Length = 46437 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 ttgaaggggaagaagacaca 237 |||||||||||||||||||| Sbjct: 41621 ttgaaggggaagaagacaca 41602
>emb|AL162263.9| Human DNA sequence from clone RP4-747K12 on chromosome 1p21.2-22.3 Contains part of the TGFBR3 gene fortransforming growth factor, beta receptor III (betaglycan, 300kDa), complete sequence Length = 71955 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 gcaagttattcatagaatat 344 |||||||||||||||||||| Sbjct: 14126 gcaagttattcatagaatat 14107
>emb|AL137845.9| Human DNA sequence from clone RP5-961K14 on chromosome X Contains a MYST histone acetyltransferase 2 (MYST2) pseudogene, a zinc finger protein 265 (ZNF265) pseudogene and a CpG island, complete sequence Length = 116457 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 gccttgaaggggaagaagacacag 238 ||||||||||||| |||||||||| Sbjct: 21119 gccttgaaggggaggaagacacag 21142
>emb|Z48612.1|SC9934 S.cerevisiae chromosome IV cosmid 9934 Length = 34586 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 330 ttattcatagaatataaaaaataa 353 ||||| |||||||||||||||||| Sbjct: 7765 ttattgatagaatataaaaaataa 7788
>emb|BX510316.11| Zebrafish DNA sequence from clone CH211-194J3 in linkage group 12, complete sequence Length = 189720 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ttcatagaatataaaaaata 352 |||||||||||||||||||| Sbjct: 168678 ttcatagaatataaaaaata 168659
>gb|BC079199.1| Rattus norvegicus hypothetical protein LOC500825, mRNA (cDNA clone MGC:94252 IMAGE:7131579), complete cds Length = 1759 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 aggaggaagtggatggagag 164 |||||||||||||||||||| Sbjct: 1279 aggaggaagtggatggagag 1298
>ref|NM_001025052.1| Rattus norvegicus hypothetical protein LOC500825 (LOC500825), mRNA Length = 1759 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 aggaggaagtggatggagag 164 |||||||||||||||||||| Sbjct: 1279 aggaggaagtggatggagag 1298
>emb|BX510910.5| Zebrafish DNA sequence from clone CH211-73O3, complete sequence Length = 50498 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 attcatagaatataaaaaat 351 |||||||||||||||||||| Sbjct: 10562 attcatagaatataaaaaat 10543
>gb|AC107057.5| Homo sapiens BAC clone RP11-554B4 from 2, complete sequence Length = 87560 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 gaaggggaagaagacacagc 239 |||||||||||||||||||| Sbjct: 85112 gaaggggaagaagacacagc 85093
>emb|BX005290.10| Zebrafish DNA sequence from clone CH211-127M10 in linkage group 6, complete sequence Length = 186793 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 gaagtggatggagaggagaagagg 173 |||||||| ||||||||||||||| Sbjct: 65180 gaagtggaaggagaggagaagagg 65203
>emb|BX908397.7| Zebrafish DNA sequence from clone CH211-103F16 in linkage group 22, complete sequence Length = 87359 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 agtatgttgataatcattat 322 |||||||||||||||||||| Sbjct: 46534 agtatgttgataatcattat 46515
>gb|AC140198.4| Mus musculus BAC clone RP23-255C4 from 16, complete sequence Length = 198007 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ccttgaaggtgttgtcttga 213 |||||||||||||||||||| Sbjct: 121334 ccttgaaggtgttgtcttga 121353
>emb|CR536612.8| Zebrafish DNA sequence from clone DKEY-1O1 in linkage group 15, complete sequence Length = 224998 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 tagaatataaaaaataattt 356 |||||||||||||||||||| Sbjct: 205433 tagaatataaaaaataattt 205414
>gb|AY851478.1| Ciona intestinalis clone BAC XNE, complete sequence Length = 106897 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 catagaatataaaaaataat 354 |||||||||||||||||||| Sbjct: 6873 catagaatataaaaaataat 6854 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,760,014 Number of Sequences: 3902068 Number of extensions: 3760014 Number of successful extensions: 94532 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 94320 Number of HSP's gapped (non-prelim): 212 length of query: 372 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 350 effective length of database: 17,147,199,772 effective search space: 6001519920200 effective search space used: 6001519920200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)