ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal35d13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC089993.2| Bos taurus clone RP42-553M7, complete sequence 44 0.32
2gb|DP000008.1| Bos taurus target 1 genomic scaffold 44 0.32
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.32
4gb|AC092780.6| Oryza sativa chromosome 3 BAC OSJNBb0079B16 genom... 44 0.32
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
6gb|AC162806.4| Mus musculus BAC clone RP23-95E13 from chromosome... 44 0.32
7emb|CT030181.13| Mouse DNA sequence from clone RP23-115A18 on ch... 44 0.32
8gb|AC146316.3| Microcebus murinus clone CH257-437M14, complete s... 42 1.3
9gb|AC183990.2| Pan troglodytes BAC clone CH251-134O11 from chrom... 42 1.3
10gb|AC144902.2| Mus musculus BAC clone RP23-400D9 from chromosome... 42 1.3
11ref|XM_725807.1| Plasmodium yoelii yoelii str. 17XNL chloroquine... 42 1.3
12gb|AC183671.2| Pan troglodytes BAC clone CH251-545A14 from chrom... 42 1.3
13emb|AL133322.13| Human DNA sequence from clone RP1-257L16 on chr... 42 1.3
14emb|AL035209.1|HS7H11 Human DNA sequence from clone XX-D7H11 on ... 42 1.3
15gb|AC183774.2| Pan troglodytes BAC clone CH251-50B16 from chromo... 42 1.3
16dbj|AK125868.1| Homo sapiens cDNA FLJ43880 fis, clone TESTI4009022 42 1.3
17gb|AE012269.1| Xanthomonas campestris pv. campestris str. ATCC 3... 42 1.3
18gb|AC084393.20| Homo sapiens 12q BAC RP11-453E3 (Roswell Park Ca... 42 1.3
19ref|NM_001039568.1| Homo sapiens hypothetical protein LOC148696 ... 42 1.3
20gb|DP000004.1| Lemur catta target 1 genomic scaffold 42 1.3
21gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 42 1.3
22gb|AC154458.2| Mus musculus BAC clone RP24-162I9 from chromosome... 42 1.3
23gb|AC123542.4| Lemur catta clone LB2-136L13, complete sequence 42 1.3
24emb|BX001056.6| Zebrafish DNA sequence from clone CH211-15P9 in ... 42 1.3
25gb|DP000022.1| Microcebus murinus target 1 genomic scaffold 42 1.3
26emb|AL805950.11| Mouse DNA sequence from clone RP23-134I15 on ch... 42 1.3
27gb|AC137120.22| Mus musculus chromosome 15, clone RP23-255G14, c... 40 5.0
28gb|AY796304.1| Homo sapiens transforming growth factor, beta rec... 40 5.0
29ref|XM_419369.1| PREDICTED: Gallus gallus similar to MGC53127 pr... 40 5.0
30gb|AC127554.4| Mus musculus BAC clone RP24-323K23 from chromosom... 40 5.0
31gb|AF335282.1| Lardizabala funaria tRNA-Leu (trnL) gene, partial... 40 5.0
32gb|AC121854.2| Mus musculus BAC clone RP24-97A15 from 7, complet... 40 5.0
33gb|AF047651.1| Caenorhabditis elegans cosmid C05D2, complete seq... 40 5.0
34emb|AL162263.9| Human DNA sequence from clone RP4-747K12 on chro... 40 5.0
35emb|AL137845.9| Human DNA sequence from clone RP5-961K14 on chro... 40 5.0
36emb|Z48612.1|SC9934 S.cerevisiae chromosome IV cosmid 9934 40 5.0
37emb|BX510316.11| Zebrafish DNA sequence from clone CH211-194J3 i... 40 5.0
38gb|BC079199.1| Rattus norvegicus hypothetical protein LOC500825,... 40 5.0
39ref|NM_001025052.1| Rattus norvegicus hypothetical protein LOC50... 40 5.0
40emb|BX510910.5| Zebrafish DNA sequence from clone CH211-73O3, co... 40 5.0
41gb|AC107057.5| Homo sapiens BAC clone RP11-554B4 from 2, complet... 40 5.0
42emb|BX005290.10| Zebrafish DNA sequence from clone CH211-127M10 ... 40 5.0
43emb|BX908397.7| Zebrafish DNA sequence from clone CH211-103F16 i... 40 5.0
44gb|AC140198.4| Mus musculus BAC clone RP23-255C4 from 16, comple... 40 5.0
45emb|CR536612.8| Zebrafish DNA sequence from clone DKEY-1O1 in li... 40 5.0
46gb|AY851478.1| Ciona intestinalis clone BAC XNE, complete sequence 40 5.0

>gb|AC089993.2| Bos taurus clone RP42-553M7, complete sequence
          Length = 162859

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 256   gagtgtgacaggatgagatggt 277
             ||||||||||||||||||||||
Sbjct: 84443 gagtgtgacaggatgagatggt 84464



to top

>gb|DP000008.1| Bos taurus target 1 genomic scaffold
          Length = 2072671

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 256     gagtgtgacaggatgagatggt 277
               ||||||||||||||||||||||
Sbjct: 1450949 gagtgtgacaggatgagatggt 1450970



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 146      ggaggaagtggatggagaggag 167
                ||||||||||||||||||||||
Sbjct: 23514913 ggaggaagtggatggagaggag 23514892



to top

>gb|AC092780.6| Oryza sativa chromosome 3 BAC OSJNBb0079B16 genomic sequence, complete
             sequence
          Length = 144383

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 146   ggaggaagtggatggagaggag 167
             ||||||||||||||||||||||
Sbjct: 67344 ggaggaagtggatggagaggag 67365



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 146      ggaggaagtggatggagaggag 167
                ||||||||||||||||||||||
Sbjct: 23507941 ggaggaagtggatggagaggag 23507920



to top

>gb|AC162806.4| Mus musculus BAC clone RP23-95E13 from chromosome 9, complete sequence
          Length = 165949

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 330    ttattcatagaatataaaaaat 351
              ||||||||||||||||||||||
Sbjct: 158973 ttattcatagaatataaaaaat 158994



to top

>emb|CT030181.13| Mouse DNA sequence from clone RP23-115A18 on chromosome 9, complete
              sequence
          Length = 281479

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 330    ttattcatagaatataaaaaat 351
              ||||||||||||||||||||||
Sbjct: 233278 ttattcatagaatataaaaaat 233257



to top

>gb|AC146316.3| Microcebus murinus clone CH257-437M14, complete sequence
          Length = 274705

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 336    atagaatataaaaaataattt 356
              |||||||||||||||||||||
Sbjct: 176267 atagaatataaaaaataattt 176287



to top

>gb|AC183990.2| Pan troglodytes BAC clone CH251-134O11 from chromosome 6, complete
              sequence
          Length = 166671

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 336    atagaatataaaaaataattt 356
              |||||||||||||||||||||
Sbjct: 110185 atagaatataaaaaataattt 110165



to top

>gb|AC144902.2| Mus musculus BAC clone RP23-400D9 from chromosome 5, complete sequence
          Length = 204858

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 147    gaggaagtggatggagaggag 167
              |||||||||||||||||||||
Sbjct: 159551 gaggaagtggatggagaggag 159531



to top

>ref|XM_725807.1| Plasmodium yoelii yoelii str. 17XNL chloroquine resistance marker
            protein (PY02945) partial mRNA
          Length = 19911

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 329  gttattcatagaatataaaaaataa 353
            |||||||||||||||||||| ||||
Sbjct: 6018 gttattcatagaatataaaacataa 5994



to top

>gb|AC183671.2| Pan troglodytes BAC clone CH251-545A14 from chromosome 6, complete
              sequence
          Length = 222567

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 336    atagaatataaaaaataattt 356
              |||||||||||||||||||||
Sbjct: 210781 atagaatataaaaaataattt 210801



to top

>emb|AL133322.13| Human DNA sequence from clone RP1-257L16 on chromosome 6q12-13, complete
              sequence
          Length = 172624

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 336    atagaatataaaaaataattt 356
              |||||||||||||||||||||
Sbjct: 120964 atagaatataaaaaataattt 120984



to top

>emb|AL035209.1|HS7H11 Human DNA sequence from clone XX-D7H11 on chromosome 1q32.2-32.3
             Contains the 3' end of the MCP gene for membrane cofactor
             protein (CD46, trophoblast-lymphocyte cross-reactive
             antigen) and the 3' end of a novel gene, complete sequence
          Length = 77551

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 153   gtggatggagaggagaagaggcatg 177
             ||||||| |||||||||||||||||
Sbjct: 35522 gtggatgcagaggagaagaggcatg 35546



to top

>gb|AC183774.2| Pan troglodytes BAC clone CH251-50B16 from chromosome 6, complete
            sequence
          Length = 169226

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 336  atagaatataaaaaataattt 356
            |||||||||||||||||||||
Sbjct: 6442 atagaatataaaaaataattt 6422



to top

>dbj|AK125868.1| Homo sapiens cDNA FLJ43880 fis, clone TESTI4009022
          Length = 3526

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 153  gtggatggagaggagaagaggcatg 177
            ||||||| |||||||||||||||||
Sbjct: 2147 gtggatgcagaggagaagaggcatg 2171



to top

>gb|AE012269.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 177
            of 460 of the complete genome
          Length = 11138

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 47   gagctggcatcggccaaggcc 67
            |||||||||||||||||||||
Sbjct: 9757 gagctggcatcggccaaggcc 9737



to top

>gb|AC084393.20| Homo sapiens 12q BAC RP11-453E3 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 182489

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 153   gtggatggagaggagaagaggcatg 177
             ||||||| |||||||||||||||||
Sbjct: 72932 gtggatgcagaggagaagaggcatg 72956



to top

>ref|NM_001039568.1| Homo sapiens hypothetical protein LOC148696 (LOC148696), mRNA
          Length = 3526

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 153  gtggatggagaggagaagaggcatg 177
            ||||||| |||||||||||||||||
Sbjct: 2147 gtggatgcagaggagaagaggcatg 2171



to top

>gb|DP000004.1| Lemur catta target 1 genomic scaffold
          Length = 1399362

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 336    atagaatataaaaaataattt 356
              |||||||||||||||||||||
Sbjct: 681274 atagaatataaaaaataattt 681294



to top

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 47      gagctggcatcggccaaggcc 67
               |||||||||||||||||||||
Sbjct: 3080749 gagctggcatcggccaaggcc 3080769



to top

>gb|AC154458.2| Mus musculus BAC clone RP24-162I9 from chromosome 17, complete sequence
          Length = 183027

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 145    aggaggaagtggatggagaggagaa 169
              ||||||||||||| |||||||||||
Sbjct: 120933 aggaggaagtggagggagaggagaa 120957



to top

>gb|AC123542.4| Lemur catta clone LB2-136L13, complete sequence
          Length = 158703

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 336   atagaatataaaaaataattt 356
             |||||||||||||||||||||
Sbjct: 24710 atagaatataaaaaataattt 24730



to top

>emb|BX001056.6| Zebrafish DNA sequence from clone CH211-15P9 in linkage group 11,
             complete sequence
          Length = 150229

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 333   ttcatagaatataaaaaataatttc 357
             |||||||||| ||||||||||||||
Sbjct: 56884 ttcatagaatttaaaaaataatttc 56860



to top

>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold
          Length = 1595145

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 336    atagaatataaaaaataattt 356
              |||||||||||||||||||||
Sbjct: 747758 atagaatataaaaaataattt 747778



to top

>emb|AL805950.11| Mouse DNA sequence from clone RP23-134I15 on chromosome 2, complete
              sequence
          Length = 237337

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 143    caaggaggaagtggatggagaggagaaga 171
              |||||||||||||| || |||||||||||
Sbjct: 147325 caaggaggaagtgggtgaagaggagaaga 147353



to top

>gb|AC137120.22| Mus musculus chromosome 15, clone RP23-255G14, complete sequence
          Length = 203811

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   ggtgttgtcttgaagccttg 220
             ||||||||||||||||||||
Sbjct: 37419 ggtgttgtcttgaagccttg 37438



to top

>gb|AY796304.1| Homo sapiens transforming growth factor, beta receptor III (betaglycan,
              300kDa) (TGFBR3) gene, complete cds
          Length = 226174

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 325    gcaagttattcatagaatat 344
              ||||||||||||||||||||
Sbjct: 147195 gcaagttattcatagaatat 147214



to top

>ref|XM_419369.1| PREDICTED: Gallus gallus similar to MGC53127 protein (LOC421304),
           mRNA
          Length = 2601

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 aagtggatggagaggagaag 170
           ||||||||||||||||||||
Sbjct: 389 aagtggatggagaggagaag 408



to top

>gb|AC127554.4| Mus musculus BAC clone RP24-323K23 from chromosome 8, complete sequence
          Length = 178416

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 146   ggaggaagtggatggagaggagaagagg 173
             ||||||||||||| ||||||||||||||
Sbjct: 73239 ggaggaagtggat-gagaggagaagagg 73213



to top

>gb|AF335282.1| Lardizabala funaria tRNA-Leu (trnL) gene, partial sequence; and
           trnL-trnF intergenic spacer, partial sequence;
           chloroplast gene for chloroplast product
          Length = 903

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 333 ttcatagaatataaaaaata 352
           ||||||||||||||||||||
Sbjct: 302 ttcatagaatataaaaaata 283



to top

>gb|AC121854.2| Mus musculus BAC clone RP24-97A15 from 7, complete sequence
          Length = 185164

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 336   atagaatataaaaaataatt 355
             ||||||||||||||||||||
Sbjct: 50166 atagaatataaaaaataatt 50147



to top

>gb|AF047651.1| Caenorhabditis elegans cosmid C05D2, complete sequence
          Length = 46437

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   ttgaaggggaagaagacaca 237
             ||||||||||||||||||||
Sbjct: 41621 ttgaaggggaagaagacaca 41602



to top

>emb|AL162263.9| Human DNA sequence from clone RP4-747K12 on chromosome 1p21.2-22.3
             Contains part of the TGFBR3 gene fortransforming growth
             factor, beta receptor III (betaglycan, 300kDa), complete
             sequence
          Length = 71955

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 325   gcaagttattcatagaatat 344
             ||||||||||||||||||||
Sbjct: 14126 gcaagttattcatagaatat 14107



to top

>emb|AL137845.9| Human DNA sequence from clone RP5-961K14 on chromosome X Contains a
             MYST histone acetyltransferase 2 (MYST2) pseudogene, a
             zinc finger protein 265 (ZNF265) pseudogene and a CpG
             island, complete sequence
          Length = 116457

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 215   gccttgaaggggaagaagacacag 238
             ||||||||||||| ||||||||||
Sbjct: 21119 gccttgaaggggaggaagacacag 21142



to top

>emb|Z48612.1|SC9934 S.cerevisiae chromosome IV cosmid 9934
          Length = 34586

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 330  ttattcatagaatataaaaaataa 353
            ||||| ||||||||||||||||||
Sbjct: 7765 ttattgatagaatataaaaaataa 7788



to top

>emb|BX510316.11| Zebrafish DNA sequence from clone CH211-194J3 in linkage group 12,
              complete sequence
          Length = 189720

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 333    ttcatagaatataaaaaata 352
              ||||||||||||||||||||
Sbjct: 168678 ttcatagaatataaaaaata 168659



to top

>gb|BC079199.1| Rattus norvegicus hypothetical protein LOC500825, mRNA (cDNA clone
            MGC:94252 IMAGE:7131579), complete cds
          Length = 1759

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  aggaggaagtggatggagag 164
            ||||||||||||||||||||
Sbjct: 1279 aggaggaagtggatggagag 1298



to top

>ref|NM_001025052.1| Rattus norvegicus hypothetical protein LOC500825 (LOC500825), mRNA
          Length = 1759

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  aggaggaagtggatggagag 164
            ||||||||||||||||||||
Sbjct: 1279 aggaggaagtggatggagag 1298



to top

>emb|BX510910.5| Zebrafish DNA sequence from clone CH211-73O3, complete sequence
          Length = 50498

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   attcatagaatataaaaaat 351
             ||||||||||||||||||||
Sbjct: 10562 attcatagaatataaaaaat 10543



to top

>gb|AC107057.5| Homo sapiens BAC clone RP11-554B4 from 2, complete sequence
          Length = 87560

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   gaaggggaagaagacacagc 239
             ||||||||||||||||||||
Sbjct: 85112 gaaggggaagaagacacagc 85093



to top

>emb|BX005290.10| Zebrafish DNA sequence from clone CH211-127M10 in linkage group 6,
             complete sequence
          Length = 186793

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 150   gaagtggatggagaggagaagagg 173
             |||||||| |||||||||||||||
Sbjct: 65180 gaagtggaaggagaggagaagagg 65203



to top

>emb|BX908397.7| Zebrafish DNA sequence from clone CH211-103F16 in linkage group 22,
             complete sequence
          Length = 87359

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   agtatgttgataatcattat 322
             ||||||||||||||||||||
Sbjct: 46534 agtatgttgataatcattat 46515



to top

>gb|AC140198.4| Mus musculus BAC clone RP23-255C4 from 16, complete sequence
          Length = 198007

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    ccttgaaggtgttgtcttga 213
              ||||||||||||||||||||
Sbjct: 121334 ccttgaaggtgttgtcttga 121353



to top

>emb|CR536612.8| Zebrafish DNA sequence from clone DKEY-1O1 in linkage group 15, complete
              sequence
          Length = 224998

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    tagaatataaaaaataattt 356
              ||||||||||||||||||||
Sbjct: 205433 tagaatataaaaaataattt 205414



to top

>gb|AY851478.1| Ciona intestinalis clone BAC XNE, complete sequence
          Length = 106897

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 335  catagaatataaaaaataat 354
            ||||||||||||||||||||
Sbjct: 6873 catagaatataaaaaataat 6854


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,760,014
Number of Sequences: 3902068
Number of extensions: 3760014
Number of successful extensions: 94532
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 94320
Number of HSP's gapped (non-prelim): 212
length of query: 372
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 350
effective length of database: 17,147,199,772
effective search space: 6001519920200
effective search space used: 6001519920200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top