ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal34n11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ICAM1_MOUSE (P13597) Intercellular adhesion molecule 1 precursor... 30 4.8
2SAMD4_HUMAN (Q9UPU9) Sterile alpha motif domain-containing prote... 30 6.2
3YL585_MIMIV (Q5UP53) Hypothetical protein L585 30 8.1
4MT_PHACO (P68499) Metallothionein (MT) (Fragment) 30 8.1
5MT_MELGA (P68498) Metallothionein (MT) 30 8.1
6MT_CHICK (P68497) Metallothionein (MT) 30 8.1
7MT_CAIMO (P68495) Metallothionein (MT) 30 8.1
8MT_ANAPL (P68494) Metallothionein (MT) 30 8.1
9MTA_COLVI (P27086) Metallothionein A (MTA) (Fragment) 30 8.1
10ATR_XENLA (Q9DE14) Serine/threonine-protein kinase atr (EC 2.7.1... 30 8.1

>ICAM1_MOUSE (P13597) Intercellular adhesion molecule 1 precursor (ICAM-1)|
           (MALA-2)
          Length = 537

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 452 CYHGEVPVESGGTRLPTVVSFPNTSSARSSP*WPRIYPSLLIQCNI 589
           C+     V+S  +   TV SFP +   R  P W ++   L ++C++
Sbjct: 91  CFENCGTVQSSASATITVYSFPESVELRPLPAWQQVGKDLTLRCHV 136



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>SAMD4_HUMAN (Q9UPU9) Sterile alpha motif domain-containing protein 4|
          Length = 529

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 431 WVIHSAGCYHGEVPVESGGTRLPTVVSFPNTSSARSSP*W 550
           W   S GC +G VP+ S  + +PT ++   TS++ + P W
Sbjct: 104 WQDKSMGCENGHVPLYSSSS-VPTTINTIGTSTSTNVPAW 142



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>YL585_MIMIV (Q5UP53) Hypothetical protein L585|
          Length = 107

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = -2

Query: 144 SLLLAPAAGRDREGDE*SVDWGDGRVVGAA 55
           SLL+APA  R   G   S  WG GR V AA
Sbjct: 72  SLLVAPAIYRAGSGPVGSTPWGSGRQVNAA 101



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>MT_PHACO (P68499) Metallothionein (MT) (Fragment)|
          Length = 49

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 121 RCRSEQQACCPVILSGSPNGCSRSCLC 201
           RCRS +++CC    +G  N C++ C+C
Sbjct: 12  RCRSCRKSCCSCCPAGC-NNCAKGCVC 37



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>MT_MELGA (P68498) Metallothionein (MT)|
          Length = 63

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 121 RCRSEQQACCPVILSGSPNGCSRSCLC 201
           RCRS +++CC    +G  N C++ C+C
Sbjct: 26  RCRSCRKSCCSCCPAGC-NNCAKGCVC 51



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>MT_CHICK (P68497) Metallothionein (MT)|
          Length = 63

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 121 RCRSEQQACCPVILSGSPNGCSRSCLC 201
           RCRS +++CC    +G  N C++ C+C
Sbjct: 26  RCRSCRKSCCSCCPAGC-NNCAKGCVC 51



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>MT_CAIMO (P68495) Metallothionein (MT)|
          Length = 63

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 121 RCRSEQQACCPVILSGSPNGCSRSCLC 201
           RCRS +++CC    +G  N C++ C+C
Sbjct: 26  RCRSCRKSCCSCCPAGC-NNCAKGCVC 51



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>MT_ANAPL (P68494) Metallothionein (MT)|
          Length = 63

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 121 RCRSEQQACCPVILSGSPNGCSRSCLC 201
           RCRS +++CC    +G  N C++ C+C
Sbjct: 26  RCRSCRKSCCSCCPAGC-NNCAKGCVC 51



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>MTA_COLVI (P27086) Metallothionein A (MTA) (Fragment)|
          Length = 43

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 121 RCRSEQQACCPVILSGSPNGCSRSCLC 201
           RCRS +++CC    +G  N C++ C+C
Sbjct: 12  RCRSCRKSCCSCCPAGC-NNCAKGCVC 37



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>ATR_XENLA (Q9DE14) Serine/threonine-protein kinase atr (EC 2.7.11.1) (Ataxia|
            telangiectasia and Rad3-related protein) (Xatr)
          Length = 2654

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +3

Query: 105  LPYPYPLQERAT----SLLPRHPLWFSQWVQQELP 197
            LP   PLQE+      +LLPRHP  F +W  +  P
Sbjct: 2421 LPKSAPLQEKLKVFKEALLPRHPPLFHEWFLRTFP 2455


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,625,083
Number of Sequences: 219361
Number of extensions: 2236882
Number of successful extensions: 7183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7175
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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