ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal34n10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC118346.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0039F06, complete sequence Length = 133022 Score = 99.6 bits (50), Expect = 1e-17 Identities = 56/58 (96%) Strand = Plus / Minus Query: 90 actccaacgtgtggaactcccaccccaagaactacggccccggatcccgcgtctggta 147 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 87372 actccaacgtgtggaactcccaccccaagaactacgggcccggctcccgcgtctggta 87315
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 99.6 bits (50), Expect = 1e-17 Identities = 56/58 (96%) Strand = Plus / Plus Query: 90 actccaacgtgtggaactcccaccccaagaactacggccccggatcccgcgtctggta 147 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 24118054 actccaacgtgtggaactcccaccccaagaactacgggcccggctcccgcgtctggta 24118111
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 99.6 bits (50), Expect = 1e-17 Identities = 56/58 (96%) Strand = Plus / Plus Query: 90 actccaacgtgtggaactcccaccccaagaactacggccccggatcccgcgtctggta 147 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 24429723 actccaacgtgtggaactcccaccccaagaactacgggcccggctcccgcgtctggta 24429780
>gb|BT017321.1| Zea mays clone EL01N0319C08.c mRNA sequence Length = 424 Score = 93.7 bits (47), Expect = 7e-16 Identities = 53/55 (96%) Strand = Plus / Plus Query: 90 actccaacgtgtggaactcccaccccaagaactacggccccggatcccgcgtctg 144 ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 50 actccaacgtgtggaactcgcaccccaagaactacgggcccggatcccgcgtctg 104
>gb|AF457936.1| Zea mays clone cho1c.pk002.j14, mRNA sequence Length = 402 Score = 93.7 bits (47), Expect = 7e-16 Identities = 53/55 (96%) Strand = Plus / Plus Query: 90 actccaacgtgtggaactcccaccccaagaactacggccccggatcccgcgtctg 144 ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 36 actccaacgtgtggaactcgcaccccaagaactacgggcccggatcccgcgtctg 90
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 91.7 bits (46), Expect = 3e-15 Identities = 55/58 (94%) Strand = Plus / Plus Query: 90 actccaacgtgtggaactcccaccccaagaactacggccccggatcccgcgtctggta 147 ||||||||||||||||||||||||||||||||||||| || || |||||||||||||| Sbjct: 19577514 actccaacgtgtggaactcccaccccaagaactacgggccgggctcccgcgtctggta 19577571
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 91.7 bits (46), Expect = 3e-15 Identities = 55/58 (94%) Strand = Plus / Plus Query: 90 actccaacgtgtggaactcccaccccaagaactacggccccggatcccgcgtctggta 147 ||||||||||||||||||||||||||||||||||||| || || |||||||||||||| Sbjct: 19503727 actccaacgtgtggaactcccaccccaagaactacgggccgggctcccgcgtctggta 19503784
>emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144596 Score = 91.7 bits (46), Expect = 3e-15 Identities = 55/58 (94%) Strand = Plus / Plus Query: 90 actccaacgtgtggaactcccaccccaagaactacggccccggatcccgcgtctggta 147 ||||||||||||||||||||||||||||||||||||| || || |||||||||||||| Sbjct: 109695 actccaacgtgtggaactcccaccccaagaactacgggccgggctcccgcgtctggta 109752
>ref|NM_194080.1| Oryza sativa (japonica cultivar-group), mRNA Length = 509 Score = 85.7 bits (43), Expect = 2e-13 Identities = 46/47 (97%) Strand = Plus / Plus Query: 90 actccaacgtgtggaactcccaccccaagaactacggccccggatcc 136 ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 40 actccaacgtgtggaactcgcaccccaagaactacggccccggatcc 86
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 85.7 bits (43), Expect = 2e-13 Identities = 46/47 (97%) Strand = Plus / Minus Query: 90 actccaacgtgtggaactcccaccccaagaactacggccccggatcc 136 ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 31739417 actccaacgtgtggaactcgcaccccaagaactacggccccggatcc 31739371
>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence Length = 134496 Score = 85.7 bits (43), Expect = 2e-13 Identities = 46/47 (97%) Strand = Plus / Minus Query: 90 actccaacgtgtggaactcccaccccaagaactacggccccggatcc 136 ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 64643 actccaacgtgtggaactcgcaccccaagaactacggccccggatcc 64597
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 85.7 bits (43), Expect = 2e-13 Identities = 46/47 (97%) Strand = Plus / Minus Query: 90 actccaacgtgtggaactcccaccccaagaactacggccccggatcc 136 ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 31829933 actccaacgtgtggaactcgcaccccaagaactacggccccggatcc 31829887
>dbj|AK059123.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-F08, full insert sequence Length = 457 Score = 85.7 bits (43), Expect = 2e-13 Identities = 52/55 (94%) Strand = Plus / Plus Query: 90 actccaacgtgtggaactcccaccccaagaactacggccccggatcccgcgtctg 144 ||||||||||||||||||||||||||||||||||||| || || ||||||||||| Sbjct: 95 actccaacgtgtggaactcccaccccaagaactacgggccgggctcccgcgtctg 149
>gb|AY109342.1| Zea mays CL3469_4 mRNA sequence Length = 814 Score = 85.7 bits (43), Expect = 2e-13 Identities = 52/55 (94%) Strand = Plus / Plus Query: 90 actccaacgtgtggaactcccaccccaagaactacggccccggatcccgcgtctg 144 |||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 66 actccaacgtctggaactcgcaccccaagaactacgggcccggatcccgcgtctg 120
>gb|AY110912.1| Zea mays CL3469_2 mRNA sequence Length = 489 Score = 75.8 bits (38), Expect = 2e-10 Identities = 44/46 (95%) Strand = Plus / Plus Query: 90 actccaacgtgtggaactcccaccccaagaactacggccccggatc 135 ||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 98 actccaacgtgtggaactcgcaccccaagaactacggccctggatc 143
>gb|AY109560.1| Zea mays CL3469_8 mRNA sequence Length = 586 Score = 69.9 bits (35), Expect = 1e-08 Identities = 50/55 (90%) Strand = Plus / Plus Query: 90 actccaacgtgtggaactcccaccccaagaactacggccccggatcccgcgtctg 144 |||||||||| |||||||| ||||| |||||||||||||| || ||||||||||| Sbjct: 40 actccaacgtttggaactcgcaccctaagaactacggccctggctcccgcgtctg 94
>gb|AY846831.1| Triticum aestivum ribosomal protein S29 mRNA, complete cds Length = 398 Score = 61.9 bits (31), Expect = 3e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 90 actccaacgtgtggaactcccaccccaagaactacggccccggatcc 136 |||| ||||| |||||||| |||||||||||||||||| |||||||| Sbjct: 46 actcgaacgtctggaactcgcaccccaagaactacggcgccggatcc 92
>gb|AE006454.1| Lactococcus lactis subsp. lactis IL1403 section 216 of 218 of the complete genome Length = 11723 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 gacgaggatcgaactcgcgag 41 ||||||||||||||||||||| Sbjct: 2938 gacgaggatcgaactcgcgag 2958
>gb|AC124712.5| Mus musculus BAC clone RP24-103K4 from chromosome 12, complete sequence Length = 169132 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 609 atgaaattgtgattacaaaaa 629 ||||||||||||||||||||| Sbjct: 91557 atgaaattgtgattacaaaaa 91537
>gb|AY310769.1| Nicotiana benthamiana clone 8-039 unknown mRNA Length = 392 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 110 caccccaagaactacggccccggatcccg 138 |||||||||||||||||||| || ||||| Sbjct: 85 caccccaagaactacggccctggctcccg 113
>gb|AF345525.1| TT virus isolate TCHN-D2 Orf2 and Orf1 genes, complete cds Length = 3196 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 466 cttgcaagttttaagctgcacttta 490 ||||||||||| ||||||||||||| Sbjct: 2918 cttgcaagtttgaagctgcacttta 2894
>gb|AC025445.5| Homo sapiens chromosome 5 clone CTD-2049O17, complete sequence Length = 184635 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 608 catgaaattgtgattacaaaa 628 ||||||||||||||||||||| Sbjct: 70974 catgaaattgtgattacaaaa 70954
>gb|AC000348.2|AC000348 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I, complete sequence Length = 111566 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 673 tgagttgttgtaatcttattc 693 ||||||||||||||||||||| Sbjct: 68756 tgagttgttgtaatcttattc 68736
>emb|AL731776.7| Mouse DNA sequence from clone RP23-58B9 on chromosome X, complete sequence Length = 237321 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 599 tgttatggacatgaaattgtgatta 623 ||||||||||| ||||||||||||| Sbjct: 175299 tgttatggacaagaaattgtgatta 175323
>emb|Z81535.3|CEF38A1 Caenorhabditis elegans Cosmid F38A1, complete sequence Length = 37282 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 619 gattacaaaaataccatactagtat 643 ||||||||||| ||||||||||||| Sbjct: 32309 gattacaaaaaaaccatactagtat 32333
>ref|XM_629928.1| Dictyostelium discoideum hypothetical protein (DDB0184065), partial mRNA Length = 2970 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 tgctttttcatctgtttgct 418 |||||||||||||||||||| Sbjct: 606 tgctttttcatctgtttgct 587
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 617 gtgattacaaaaataccata 636 |||||||||||||||||||| Sbjct: 153963 gtgattacaaaaataccata 153982
>ref|XM_712669.1| Candida albicans SC5314 hypothetical protein (CaO19_5387), mRNA Length = 4041 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 cggaagcggagaagacgatg 86 |||||||||||||||||||| Sbjct: 234 cggaagcggagaagacgatg 253
>ref|XM_712668.1| Candida albicans SC5314 hypothetical protein (CaO19_5386), mRNA Length = 414 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 cggaagcggagaagacgatg 86 |||||||||||||||||||| Sbjct: 150 cggaagcggagaagacgatg 131
>ref|XM_712575.1| Candida albicans SC5314 hypothetical protein (CaO19_12842), mRNA Length = 4041 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 cggaagcggagaagacgatg 86 |||||||||||||||||||| Sbjct: 234 cggaagcggagaagacgatg 253
>ref|XM_712574.1| Candida albicans SC5314 hypothetical protein (CaO19_12841), mRNA Length = 414 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 cggaagcggagaagacgatg 86 |||||||||||||||||||| Sbjct: 150 cggaagcggagaagacgatg 131
>gb|DQ017120.1| Nelumbo nucifera RNA polymerase II second largest subunit (RPB2) gene, exons 2 through 23 and partial cds Length = 5530 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 caagttttaagctgcacttt 489 |||||||||||||||||||| Sbjct: 959 caagttttaagctgcacttt 978
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 617 gtgattacaaaaataccata 636 |||||||||||||||||||| Sbjct: 140553 gtgattacaaaaataccata 140572
>gb|AC117214.3| Mus musculus BAC clone RP23-307B15 from chromosome 9, complete sequence Length = 219833 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 603 atggacatgaaattgtgatt 622 |||||||||||||||||||| Sbjct: 210450 atggacatgaaattgtgatt 210469
>emb|CR388381.12| Zebrafish DNA sequence from clone CH211-222P22 in linkage group 16, complete sequence Length = 141855 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 tggtggtgcttgcaagtttt 477 |||||||||||||||||||| Sbjct: 43581 tggtggtgcttgcaagtttt 43600
>emb|AL109658.5|HSJ776F14 Human DNA sequence from clone RP4-776F14 on chromosome 20p12.2-13 Contains the 5' end of the FKBP1A gene for FK506 binding protein 1A (12kDa), the NSFL1C gene for NSFL1 (p97) cofactor (p47), the PTPN1L gene for protein tyrosine phosphatase non-receptor type 1-like, the 3' end of a novel gene and two CpG islands, complete sequence Length = 119241 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 612 aaattgtgattacaaaaata 631 |||||||||||||||||||| Sbjct: 56167 aaattgtgattacaaaaata 56148
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 gacgaggatcgaactcgcga 40 |||||||||||||||||||| Sbjct: 297075 gacgaggatcgaactcgcga 297056
>gb|AC098591.4| Homo sapiens BAC clone RP11-333E13 from 4, complete sequence Length = 179641 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 ttcatctgtttgctaggaat 424 |||||||||||||||||||| Sbjct: 150284 ttcatctgtttgctaggaat 150303
>emb|AL513466.1|NCB18D24 Neurospora crassa DNA linkage group V BAC contig B18D24 Length = 157180 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 447 atgttgtctgctggtggtgc 466 |||||||||||||||||||| Sbjct: 39975 atgttgtctgctggtggtgc 39956
>emb|AL451018.1|NC99H12 Neurospora crassa DNA linkage group V Cosmid contig 99H12 Length = 85165 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 atgttgtctgctggtggtgc 466 |||||||||||||||||||| Sbjct: 25266 atgttgtctgctggtggtgc 25285
>gb|AC131053.2| Homo sapiens chromosome 18, clone RP11-348G23, complete sequence Length = 191115 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 615 ttgtgattacaaaaataccatact 638 ||||||||||||||||| |||||| Sbjct: 76412 ttgtgattacaaaaataacatact 76389
>gb|AC008019.60| Mus musculus strain 129S6/SvEvTac chromosome 16 clone rp21-519i24, complete sequence Length = 189707 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 617 gtgattacaaaaataccata 636 |||||||||||||||||||| Sbjct: 29076 gtgattacaaaaataccata 29095
>gb|AC099848.2| Homo sapiens chromosome 18, clone RP11-856F24, complete sequence Length = 132288 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 615 ttgtgattacaaaaataccatact 638 ||||||||||||||||| |||||| Sbjct: 10499 ttgtgattacaaaaataacatact 10476
>emb|BX324156.6| Zebrafish DNA sequence from clone CH211-215C3 in linkage group 1, complete sequence Length = 214471 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 aactctcccaatggctcccg 186 |||||||||||||||||||| Sbjct: 73793 aactctcccaatggctcccg 73774
>gb|DQ401084.1| Chlamydomonas sp. ICE-L ribosomal protein S29 subunit mRNA, complete cds Length = 735 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ccaccccaagaactacggcc 128 |||||||||||||||||||| Sbjct: 76 ccaccccaagaactacggcc 95
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 617 gtgattacaaaaataccata 636 |||||||||||||||||||| Sbjct: 142265 gtgattacaaaaataccata 142284
>gb|AF269414.1|AF269414 Staphylococcus epidermidis strain SR1 clone step.1003d11 genomic sequence Length = 3330 Score = 40.1 bits (20), Expect = 9.6 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 660 atgatatgtttgat-gagttgttgtaat 686 |||||||||||||| ||||||||||||| Sbjct: 582 atgatatgtttgatagagttgttgtaat 555
>gb|AC025679.4|AC025679 Homo sapiens chromosome 18, clone RP11-383C19, complete sequence Length = 166937 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 615 ttgtgattacaaaaataccatact 638 ||||||||||||||||| |||||| Sbjct: 83667 ttgtgattacaaaaataacatact 83690
>dbj|AK033250.1| Mus musculus 15 days embryo male testis cDNA, RIKEN full-length enriched library, clone:8030475H09 product:coatomer protein complex, subunit beta 2 (beta prime), full insert sequence Length = 2631 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 603 atggacatgaaattgtgatt 622 |||||||||||||||||||| Sbjct: 1825 atggacatgaaattgtgatt 1844
>emb|BX255899.5| Zebrafish DNA sequence from clone CH211-279I13 in linkage group 6, complete sequence Length = 149442 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 629 ataccatactagtatggggt 648 |||||||||||||||||||| Sbjct: 120160 ataccatactagtatggggt 120141
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 654 tttgtcatgatatgtttgat 673 |||||||||||||||||||| Sbjct: 16462932 tttgtcatgatatgtttgat 16462951 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 612 aaattgtgattacaaaaata 631 |||||||||||||||||||| Sbjct: 3740913 aaattgtgattacaaaaata 3740932
>gb|AC093892.3| Homo sapiens BAC clone RP11-702L18 from 2, complete sequence Length = 111078 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 402 tttttcatctgtttgctaggaattaatg 429 ||||||||| ||||| |||||||||||| Sbjct: 51722 tttttcatcagtttgttaggaattaatg 51695
>gb|AC133574.15| Mus musculus strain C57BL/6J clone rp23-35b9, complete sequence Length = 168432 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 617 gtgattacaaaaataccata 636 |||||||||||||||||||| Sbjct: 72482 gtgattacaaaaataccata 72501
>gb|AF270049.1|AF270049 Staphylococcus epidermidis strain SR1 clone step.1043h08 genomic sequence Length = 3413 Score = 40.1 bits (20), Expect = 9.6 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 660 atgatatgtttgat-gagttgttgtaat 686 |||||||||||||| ||||||||||||| Sbjct: 1531 atgatatgtttgatagagttgttgtaat 1504
>gb|AF269892.1|AF269892 Staphylococcus epidermidis strain SR1 clone step.1029b11 genomic sequence Length = 2918 Score = 40.1 bits (20), Expect = 9.6 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 660 atgatatgtttgat-gagttgttgtaat 686 |||||||||||||| ||||||||||||| Sbjct: 433 atgatatgtttgatagagttgttgtaat 460
>gb|AF269585.1|AF269585 Staphylococcus epidermidis strain SR1 clone step.1012a05 genomic sequence Length = 3674 Score = 40.1 bits (20), Expect = 9.6 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 660 atgatatgtttgat-gagttgttgtaat 686 |||||||||||||| ||||||||||||| Sbjct: 2553 atgatatgtttgatagagttgttgtaat 2580
>dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0669G09 Length = 140067 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 612 aaattgtgattacaaaaata 631 |||||||||||||||||||| Sbjct: 81230 aaattgtgattacaaaaata 81249
>dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0527E02 Length = 176826 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 654 tttgtcatgatatgtttgat 673 |||||||||||||||||||| Sbjct: 36347 tttgtcatgatatgtttgat 36366
>dbj|AK067614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108P21, full insert sequence Length = 2533 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 654 tttgtcatgatatgtttgat 673 |||||||||||||||||||| Sbjct: 555 tttgtcatgatatgtttgat 536
>emb|X13254.1|NCCRP1R Neurospora crassa crp-1 mRNA for ribosomal protein homologous to yeast cyH2 gene encoding L29 Length = 850 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 447 atgttgtctgctggtggtgc 466 |||||||||||||||||||| Sbjct: 28 atgttgtctgctggtggtgc 9
>emb|X06320.1|NCCRP1G Neurospora crassa crp-1 gene for ribosomal protein homologous to yeast cyH2 gene encoding L29 Length = 2214 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 447 atgttgtctgctggtggtgc 466 |||||||||||||||||||| Sbjct: 762 atgttgtctgctggtggtgc 743
>emb|AL139020.5|CNS01DX2 Human chromosome 14 DNA sequence BAC R-164H13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 166308 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 aaactgtgtttgatgtttga 524 |||||||||||||||||||| Sbjct: 158074 aaactgtgtttgatgtttga 158093
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 132 gatcccgcgtctggtaagcgcccactgc 159 ||||||||||| || ||||||||||||| Sbjct: 13317 gatcccgcgtccggcaagcgcccactgc 13290
>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome Length = 2499279 Score = 40.1 bits (20), Expect = 9.6 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 660 atgatatgtttgat-gagttgttgtaat 686 |||||||||||||| ||||||||||||| Sbjct: 369235 atgatatgtttgatagagttgttgtaat 369262
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome Length = 1992676 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 564 gttgataagcaaggtttaat 583 |||||||||||||||||||| Sbjct: 459940 gttgataagcaaggtttaat 459959
>gb|AC140449.3| Mus musculus BAC clone RP24-116C1 from 9, complete sequence Length = 222299 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 603 atggacatgaaattgtgatt 622 |||||||||||||||||||| Sbjct: 210822 atggacatgaaattgtgatt 210803
>dbj|D13509.1|MUSPAPA Mus musculus mRNA for PAP homologous protein, complete cds Length = 745 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 cccccgggctgaggaattcg 20 |||||||||||||||||||| Sbjct: 572 cccccgggctgaggaattcg 553 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,179,027 Number of Sequences: 3902068 Number of extensions: 5179027 Number of successful extensions: 99438 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 99048 Number of HSP's gapped (non-prelim): 436 length of query: 701 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 678 effective length of database: 17,143,297,704 effective search space: 11623155843312 effective search space used: 11623155843312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
