ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal35a17 |
|---|---|
| Clone Library Name | barley_pub |
>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1852 Score = 32.0 bits (71), Expect = 1.6 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 1/101 (0%) Frame = +1 Query: 196 SSPQ-AQSAPHVALFYPPYGSQQPACGNTETLSRGMVVQPAYSTISSSQRKHHEAAPVYV 372 SSPQ + ++PH + P Y PA G + P+YS S S + +P Y Sbjct: 1578 SSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPS---YSPTSPSYS 1634 Query: 373 QSSAIAVPMAEXXXXXXXXXXXXSPGNGSFAPQQCKVGPYS 495 +S P + SP + S++P P S Sbjct: 1635 PTSPSYSPTSP---SYSPTSPSYSPSSPSYSPSSPSYSPSS 1672
>XRN1_MOUSE (P97789) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (mXRN1)| (Strand-exchange protein 1 homolog) (Protein Dhm2) Length = 1719 Score = 31.6 bits (70), Expect = 2.1 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 6/77 (7%) Frame = +1 Query: 148 YHNMQQVPAQMVQLQTSSPQAQSAPHVALFYPPYGSQ------QPACGNTETLSRGMVVQ 309 + N + +Q LQT+ P + A + P S QP + ET S+G V Sbjct: 1633 FENKEAQSSQATPLQTNKPGSSEATKMTPQESPPASSSSSQAAQPVSSHVETASQGHVGS 1692 Query: 310 PAYSTISSSQRKHHEAA 360 S SSS+RK + A Sbjct: 1693 QPRSAPSSSKRKSRKLA 1709
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 31.2 bits (69), Expect = 2.8 Identities = 43/157 (27%), Positives = 51/157 (32%), Gaps = 16/157 (10%) Frame = +1 Query: 214 SAPHVALF-YPPY--GSQQPACGNTETLSRGMVVQPAYSTISSSQRKHHEAAPVYVQSSA 384 SAP+ A+ YP Y GS P QP Y+T QR + P A Sbjct: 1149 SAPNAAIDGYPGYPGGSPYPVASGP---------QPDYATAGQMQRPPSQNNPQTPHPGA 1199 Query: 385 IAVPMAEXXXXXXX-----XXXXXSPGNGSFAPQQCKVGPYSVQGGAQAYNTVYGS---- 537 A A PG+G+ GP + GGA A V G Sbjct: 1200 AAAVAAGDNISVSNPFEDPIAAGGGPGSGTGPGPGQGPGPGAASGGAGAVGAVGGGPQPH 1259 Query: 538 --PPNSAATFVAVLPQQAQASAPMMLHH--LGPQPVQ 636 PP+S T Q Q P H GP P Q Sbjct: 1260 PPPPHSPHTAAQQAAGQHQQQHPQHQHPGLPGPPPPQ 1296
>LATS1_HUMAN (O95835) Serine/threonine-protein kinase LATS1 (EC 2.7.11.1) (Large| tumor suppressor homolog 1) (WARTS protein kinase) (h-warts) Length = 1130 Score = 31.2 bits (69), Expect = 2.8 Identities = 40/162 (24%), Positives = 59/162 (36%), Gaps = 2/162 (1%) Frame = +1 Query: 151 HNMQQVPAQMVQLQTSSPQAQSAPHVALFYPPYGSQQPACGNTETLSRGMVVQPAYSTIS 330 HNM+ + LQT+ PQ+ SAP A P G + P + P + S Sbjct: 417 HNMELYNISVPGLQTNWPQSSSAP--AQSSPSSGHEIPTWQPNIPVRSNSFNNPLGNRAS 474 Query: 331 SSQRKHHEAAPV-YVQSSAIAVPMAEXXXXXXXXXXXXSPGNGSFAPQQCKVGPYSVQGG 507 S A V + + I P+ +P + S+ PQ + Sbjct: 475 HSANSQPSATTVTAITPAPIQQPVKSMRVLKPELQTALAPTHPSWIPQPIQ--------- 525 Query: 508 AQAYNTVYGSP-PNSAATFVAVLPQQAQASAPMMLHHLGPQP 630 TV SP P A+ V V+P A+A ++ GP P Sbjct: 526 -----TVQPSPFPEGTASNVTVMPPVAEAP-----NYQGPPP 557
>RIPK5_CANFA (Q4VSN4) Receptor-interacting serine/threonine-protein kinase 5 (EC| 2.7.11.1) (Dusty protein kinase) (Dusty PK) Length = 931 Score = 31.2 bits (69), Expect = 2.8 Identities = 20/64 (31%), Positives = 27/64 (42%) Frame = -1 Query: 610 GASSEHWPALAEEGQQQKWQHCWEGSHIRCCRPGHRPGLNRVQPCIVEVQMSHCRANETA 431 GA E P EE Q + CW+G P RP L VQP + + C++N Sbjct: 870 GARPERLPVFDEECWQLM-EACWDGD------PSQRPLLGIVQPMLQGIMERLCKSNSER 922 Query: 430 GSAG 419 + G Sbjct: 923 PNTG 926
>TENS1_HUMAN (Q9HBL0) Tensin-1| Length = 1735 Score = 30.8 bits (68), Expect = 3.6 Identities = 41/157 (26%), Positives = 63/157 (40%), Gaps = 11/157 (7%) Frame = +1 Query: 187 LQTSSPQAQSAPHVALFYPPYGSQQPACGNTET-------LSRGMVVQPAYSTISSSQRK 345 L TSSP SA ++ P G T T G + QP+ S+QR Sbjct: 1076 LSTSSP-ILSADSTSVGSFPSGESSDQGPRTPTQPLLESGFRSGSLGQPS----PSAQRN 1130 Query: 346 HHEAAPVYVQSSAIAVPMAEXXXXXXXXXXXXSPGNGSFAPQQCKVGPYSVQGGAQAYNT 525 + ++P+ S+ + P SP + + A Q G ++V G QA + Sbjct: 1131 YQSSSPLPTVGSSYSSP------DYSLQHFSSSPESQARA-QFSVAGVHTVPGSPQARHR 1183 Query: 526 VYGS--PPNSAATFVAVLPQQAQASAPMMLHH--LGP 624 G+ PP+ A+ P A S+P + HH +GP Sbjct: 1184 TVGTNTPPSPGFGRRAINPSMAAPSSPSLSHHQMMGP 1220
>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21| Length = 2189 Score = 30.8 bits (68), Expect = 3.6 Identities = 40/164 (24%), Positives = 46/164 (28%), Gaps = 9/164 (5%) Frame = +1 Query: 49 IQAQHHWQHQTVQDVHSXXXXXXXXXXXXXXXXYHN----MQQVPAQMVQLQTSSPQAQS 216 +Q Q H QHQ Q QQ P Q QLQ PQ Q Sbjct: 1324 LQQQQHQQHQHQQHPQQPQQQGQVQQQVVSQQQQQQHQPQQQQQPQQQQQLQQQQPQQQQ 1383 Query: 217 APHVALFYPPYGSQQPACGNTETLSRGMVVQPAYSTISSSQRKHHEAA-----PVYVQSS 381 H + P QQP T V Q + + S VY+ S Sbjct: 1384 PQHQQVQTPQPAQQQPQQPQV-TQQPPPVPQVQINGVQGSPTPMRPVVNSLNNGVYMSSV 1442 Query: 382 AIAVPMAEXXXXXXXXXXXXSPGNGSFAPQQCKVGPYSVQGGAQ 513 + MA SPG G P P Q AQ Sbjct: 1443 SAQAMMASFNAANSVAGMVTSPGAGLSMPMLPAGSPRGPQIPAQ 1486
>F19A4_MACFA (Q9N0D3) Protein FAM19A4 precursor (Chemokine-like protein TAFA-4)| Length = 140 Score = 30.8 bits (68), Expect = 3.6 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 5/56 (8%) Frame = -1 Query: 529 IRC-CRPGHRPGLNRVQPCIVE----VQMSHCRANETAGSAGAGCDVLP*EQQWRC 377 ++C C PG G R QP VE +Q C N G C VLP W C Sbjct: 74 VKCSCFPGQVAGTTRAQPSCVEASIVIQKWWCHMNPCL--EGEDCKVLPDYSGWSC 127
>F19A4_HUMAN (Q96LR4) Protein FAM19A4 precursor (Chemokine-like protein TAFA-4)| Length = 140 Score = 30.8 bits (68), Expect = 3.6 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 5/56 (8%) Frame = -1 Query: 529 IRC-CRPGHRPGLNRVQPCIVE----VQMSHCRANETAGSAGAGCDVLP*EQQWRC 377 ++C C PG G R QP VE +Q C N G C VLP W C Sbjct: 74 VKCSCFPGQVAGTTRAQPSCVEASIVIQKWWCHMNPCL--EGEDCKVLPDYSGWSC 127
>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated| protein 10.8) (High sulfur keratin-associated protein 10.8) (Keratin-associated protein 18-8) (Keratin-associated protein 18.8) Length = 259 Score = 30.4 bits (67), Expect = 4.8 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 12/80 (15%) Frame = +3 Query: 447 RQWLICTSTMQGWT--------LFSPGRCPGLQHRIWEPSQQCCHFCCCPSSASAGQCSD 602 R ++I STM + + SP C G ++ + CC C SS C Sbjct: 8 RTYVIAASTMSVCSSDVGRVSRVSSPSTCTGSSWQVDNCQESCCEPRSCASSCCTPSCCA 67 Query: 603 DAPSLR---TPARAE-SPCR 650 AP L P E SPC+ Sbjct: 68 PAPCLALVCAPVSCEPSPCQ 87
>F19A4_MOUSE (Q7TPG5) Protein FAM19A4 precursor (Chemokine-like protein TAFA-4)| Length = 135 Score = 30.4 bits (67), Expect = 4.8 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 5/56 (8%) Frame = -1 Query: 529 IRC-CRPGHRPGLNRVQPCIVE----VQMSHCRANETAGSAGAGCDVLP*EQQWRC 377 ++C C PG G R QP VE ++ C N G C VLP W C Sbjct: 69 VKCSCFPGQVAGTTRAQPSCVEAAIVIEKWWCHMNPCL--EGEDCKVLPDSSGWSC 122
>ESC1_SCHPO (Q04635) Protein esc1| Length = 413 Score = 30.4 bits (67), Expect = 4.8 Identities = 32/136 (23%), Positives = 44/136 (32%), Gaps = 1/136 (0%) Frame = +1 Query: 154 NMQQVPAQMVQLQTSSPQAQSAPHVALFYPPYGSQQ-PACGNTETLSRGMVVQPAYSTIS 330 +MQ P + L+ S SAP + PY QQ P N+ L ST S Sbjct: 8 SMQPTPTSSIPLRQMSQPTTSAPSNSASSTPYSPQQVPLTHNSYPL----------STPS 57 Query: 331 SSQRKHHEAAPVYVQSSAIAVPMAEXXXXXXXXXXXXSPGNGSFAPQQCKVGPYSVQGGA 510 S Q P+ + P + S A V G + Sbjct: 58 SFQHGQTRLPPINCLAEPFNRPQPWHSNSAAPASSSPTSATLSTAAHPVHTNAAQVAGSS 117 Query: 511 QAYNTVYGSPPNSAAT 558 +Y VY PP ++ T Sbjct: 118 SSY--VYSVPPTNSTT 131
>GRN_CAVPO (P28797) Granulins precursor (Proepithelin) (PEPI) [Contains:| Acrogranin; Granulin-1; Granulin-2; Granulin-3; Granulin-4; Granulin-5; Granulin-6; Granulin-7] (Fragment) Length = 591 Score = 30.0 bits (66), Expect = 6.2 Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%) Frame = +3 Query: 537 PSQQCCHFCCCPSSASAG-QCSDDAPSLRTPA 629 P Q C CCP S A C D LRT A Sbjct: 7 PDDQVCPVACCPDSGGASYSCCDPGVDLRTTA 38
>KR105_HUMAN (P60370) Keratin-associated protein 10-5 (Keratin-associated| protein 10.5) (High sulfur keratin-associated protein 10.5) (Keratin-associated protein 18-5) (Keratin-associated protein 18.5) Length = 271 Score = 29.6 bits (65), Expect = 8.1 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Frame = +3 Query: 540 SQQCCHFCCCPSSASAGQCSDDAPSLRTPA-RAESPCR 650 S CC C PS +G S PS PA A SPC+ Sbjct: 48 SSPCCQAACEPSPCQSGCTSSCTPSCCQPACCASSPCQ 85
>NOTC1_RAT (Q07008) Neurogenic locus notch homolog protein 1 precursor (Notch 1)| [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2531 Score = 29.6 bits (65), Expect = 8.1 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +3 Query: 426 DPAVSFARQWLICTSTMQGWTLFSPGRC 509 D +++F W CT ++Q W FS G C Sbjct: 1478 DCSLNFNDPWKNCTQSLQCWKYFSDGHC 1505
>NOTC1_MOUSE (Q01705) Neurogenic locus notch homolog protein 1 precursor (Notch 1)| (Motch A) (mT14) (p300) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2531 Score = 29.6 bits (65), Expect = 8.1 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +3 Query: 426 DPAVSFARQWLICTSTMQGWTLFSPGRC 509 D +++F W CT ++Q W FS G C Sbjct: 1478 DCSLNFNDPWKNCTQSLQCWKYFSDGHC 1505
>GIDB_XANCP (Q8P3N0) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 212 Score = 29.6 bits (65), Expect = 8.1 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +2 Query: 407 ITSSTSRPSSFIRPAMAHLHLNNARLDPIQSRAVPRP 517 + S + + F+R A+ HL L NAR+ ++ AV P Sbjct: 101 LVESNGKKARFMREALRHLALGNARVAEARAEAVDEP 137
>GIDB_XANC8 (Q4UP54) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 212 Score = 29.6 bits (65), Expect = 8.1 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +2 Query: 407 ITSSTSRPSSFIRPAMAHLHLNNARLDPIQSRAVPRP 517 + S + + F+R A+ HL L NAR+ ++ AV P Sbjct: 101 LVESNGKKARFMREALRHLALGNARVAEARAEAVDEP 137
>D11_DICDI (P05817) Prestalk D11 protein precursor| Length = 282 Score = 29.6 bits (65), Expect = 8.1 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = -1 Query: 640 DSARAGVLSDGASSEHWPALAEEGQQQKWQHCWEGSHIRCCRPGHRP 500 DS + G L G P +E + ++W HI+ C+PG +P Sbjct: 228 DSCKNGELPTGCC----PCTPQETKVRRWSKAMCTMHIKYCKPGEKP 270
>NOTC1_HUMAN (P46531) Neurogenic locus notch homolog protein 1 precursor (Notch 1)| (hN1) (Translocation-associated notch protein TAN-1) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2556 Score = 29.6 bits (65), Expect = 8.1 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +3 Query: 426 DPAVSFARQWLICTSTMQGWTLFSPGRC 509 D +++F W CT ++Q W FS G C Sbjct: 1479 DCSLNFNDPWKNCTQSLQCWKYFSDGHC 1506 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.125 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,167,016 Number of Sequences: 219361 Number of extensions: 2072578 Number of successful extensions: 5284 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4858 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5249 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
