ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal34k21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PICO_DROME (Q9V7S5) Putative inorganic phosphate cotransporter 29 5.1
2SUFS_WIGBR (Q8D2J7) Cysteine desulfurase (EC 2.8.1.7) (Selenocys... 29 5.1
3KCRU_MOUSE (P30275) Creatine kinase, ubiquitous mitochondrial pr... 29 5.1
4HHEX_MOUSE (P43120) Homeobox protein PRH (Hematopoietically expr... 28 8.8
5YXWK_CAEEL (Q21184) Putative cuticle collagen F55C10.3 28 8.8

>PICO_DROME (Q9V7S5) Putative inorganic phosphate cotransporter|
          Length = 529

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 116 FRTWVHQDPSCHPTLSPKADQALTGSL 36
           F  +VH+DPS HPT+  +  + +  SL
Sbjct: 248 FLIFVHEDPSSHPTIDEREKKYINDSL 274



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>SUFS_WIGBR (Q8D2J7) Cysteine desulfurase (EC 2.8.1.7) (Selenocysteine lyase)|
           (EC 4.4.1.16) (Selenocysteine reductase) (Selenocysteine
           beta-lyase) (SCL)
          Length = 410

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 363 ICTYINSDLENEVYLVALTCANHTFPSTGTSETFLLEQDQMGIQIMEHH 217
           I  +IN+  ++E+  V  T       +    ETF+ + D + I  MEHH
Sbjct: 76  IAKFINAKSDSEIIFVKGTTEGINLVANTWGETFIKKGDNIVITQMEHH 124



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>KCRU_MOUSE (P30275) Creatine kinase, ubiquitous mitochondrial precursor (EC|
           2.7.3.2) (U-MtCK) (Mia-CK) (Acidic-type mitochondrial
           creatine kinase)
          Length = 418

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 21  SSTLPQRPGQRLVSLG*EGGMTRGVLMDPST 113
           S  L  RPG RL++L   G +T G+L+ P +
Sbjct: 6   SRLLSARPGLRLLALAGAGSLTAGILLRPES 36



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>HHEX_MOUSE (P43120) Homeobox protein PRH (Hematopoietically expressed|
           homeobox) (Homeobox protein HEX)
          Length = 271

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 146 NNGFKHLITGFRTWVHQDPSCHPTLSPKADQALTGSLGKS 27
           N+ F  L++ +RT V++    HP  S     AL  + G S
Sbjct: 56  NSSFTSLVSSYRTPVYEPTPVHPAFSHHPAAALAAAYGPS 95



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>YXWK_CAEEL (Q21184) Putative cuticle collagen F55C10.3|
          Length = 266

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 11  G*PEQHSSPETRSAPGQPWVRGWDDKRGLDGPKYGN 118
           G P    +P  +  PGQP   G D + G  GPK  N
Sbjct: 183 GAPGPQGTPGPQGPPGQPGQPGHDGQPGAPGPKGPN 218


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,138,005
Number of Sequences: 219361
Number of extensions: 1221086
Number of successful extensions: 2976
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2974
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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