>PSAG_HORVU (Q00327) Photosystem I reaction center subunit V, chloroplast|
           precursor (PSI-G) (Photosystem I 9 kDa protein)
          Length = 143

 Score =  188 bits (478), Expect(2) = 2e-51
 Identities = 91/91 (100%), Positives = 91/91 (100%)
 Frame = +2

Query: 53  SLSTGLSLVMGRFVFFNFQRENVAKQVPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNL 232
           SLSTGLSLVMGRFVFFNFQRENVAKQVPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNL
Sbjct: 53  SLSTGLSLVMGRFVFFNFQRENVAKQVPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNL 112

Query: 233 VDVLAWGSIGHIVAYYILATTSNGYDPPFFG 325
           VDVLAWGSIGHIVAYYILATTSNGYDPPFFG
Sbjct: 113 VDVLAWGSIGHIVAYYILATTSNGYDPPFFG 143



 Score = 33.5 bits (75), Expect(2) = 2e-51
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 3  ARRSVAARAALEPSVVI 53
          ARRSVAARAALEPSVVI
Sbjct: 36 ARRSVAARAALEPSVVI 52

>PSAG_SPIOL (P12357) Photosystem I reaction center subunit V, chloroplast|
           precursor (PSI-G) (Photosystem I 9 kDa protein)
          Length = 167

 Score =  164 bits (415), Expect(2) = 2e-41
 Identities = 77/90 (85%), Positives = 83/90 (92%)
 Frame = +2

Query: 53  SLSTGLSLVMGRFVFFNFQRENVAKQVPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNL 232
           SLSTGLSL +GRFVFFNFQREN+AKQVPEQNG +HFEAGD RAKE+  +LKSNDPVGFN+
Sbjct: 78  SLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNI 137

Query: 233 VDVLAWGSIGHIVAYYILATTSNGYDPPFF 322
           VDVLAWGSIGHIVAYYILAT SNGYDP FF
Sbjct: 138 VDVLAWGSIGHIVAYYILATASNGYDPSFF 167



 Score = 24.3 bits (51), Expect(2) = 2e-41
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 3   ARRSVAARAALEPSVVI 53
           ARRS+  RA L PS+VI
Sbjct: 61  ARRSMTCRAELSPSLVI 77

>PSAG_ARATH (Q9S7N7) Photosystem I reaction center subunit V, chloroplast|
           precursor (PSI-G)
          Length = 160

 Score =  167 bits (422), Expect = 2e-41
 Identities = 79/92 (85%), Positives = 87/92 (94%), Gaps = 1/92 (1%)
 Frame = +2

Query: 53  SLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFN 229
           SLSTGLSL +GRFVFFNFQRENVAKQ +PEQNGKTHFEAGD+RAKE+  +LKSNDP+GFN
Sbjct: 69  SLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFN 128

Query: 230 LVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 325
           +VDVLAWGSIGHIVAYYILAT+SNGYDP FFG
Sbjct: 129 IVDVLAWGSIGHIVAYYILATSSNGYDPSFFG 160

>PSAG_TORRU (Q9SPM4) Photosystem I reaction center subunit V, chloroplast|
           precursor (PSI-G)
          Length = 112

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 43/87 (49%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
 Frame = +2

Query: 53  SLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFN 229
           S ST   L +GRFVF  FQR  V++  +PEQNG           + +  +LK+NDP GF 
Sbjct: 23  SASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTNDPAGFT 82

Query: 230 LVDVLAWGSIGHIVAYYILATTSNGYD 310
           LVDVLAWG++GH V ++ILAT +NGY+
Sbjct: 83  LVDVLAWGALGHAVGFFILATATNGYN 109

>PSAG_CHLRE (P14224) Photosystem I reaction center subunit V, chloroplast|
           precursor (PSI-G) (Light-harvesting complex I 10 kDa
           protein) (P35 protein)
          Length = 126

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
 Frame = +2

Query: 59  STGLSLVMGRFVFFNFQRENV---AKQVPEQNGKTHFEAGDERAKEFAGILKSNDPVGFN 229
           ST   L +GRFVF  +QR      +   P+  G T+F+   + +  FA    +NDP GFN
Sbjct: 41  STAAFLAIGRFVFLGYQRREANFDSTVGPKTTGATYFDDLQKNSTIFA----TNDPAGFN 96

Query: 230 LVDVLAWGSIGHIVAYYILATTS 298
           ++DV  WG++GH V + +LA  S
Sbjct: 97  IIDVAGWGALGHAVGFAVLAINS 119

>PSAG_PEA (P20120) Photosystem I reaction center subunit V (PSI-G)|
           (Photosystem I 9 kDa protein) (Fragment)
          Length = 39

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 27/31 (87%), Positives = 29/31 (93%), Gaps = 1/31 (3%)
 Frame = +2

Query: 53  SLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQ 142
           SLSTGLSL +GRFVFFNFQRENVAKQ +PEQ
Sbjct: 9   SLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39

>PSAK_CHLRE (P14225) Photosystem I reaction center subunit psaK, chloroplast|
           precursor (Photosystem I subunit X) (PSI-K)
           (Light-harvesting complex I 8.4 kDa protein) (P37
           protein)
          Length = 113

 Score = 37.4 bits (85), Expect = 0.025
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = +2

Query: 179 AKEFAGILKSNDPVGFNLVDVLAWGSIGH 265
           +K  AG++ SNDP GF +VDVLA G+ GH
Sbjct: 70  SKNSAGVI-SNDPAGFTIVDVLAMGAAGH 97

>PSAK_ARATH (Q9SUI5) Photosystem I reaction center subunit psaK, chloroplast|
           precursor (Photosystem I subunit X) (PSI-K)
          Length = 130

 Score = 35.4 bits (80), Expect = 0.095
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 200 LKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSN 301
           L++ DP GF L D LA G++GHI+   ++    N
Sbjct: 93  LQTGDPAGFTLADTLACGTVGHIIGVGVVLGLKN 126

>PSAK_HORVU (P36886) Photosystem I reaction center subunit psaK, chloroplast|
           precursor (Photosystem I subunit X) (PSI-K)
           (Light-harvesting complex I 7 kDa protein)
          Length = 131

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 200 LKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSN 301
           L++ DP GF L D LA G++GHI+   I+    N
Sbjct: 89  LQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKN 122

>PSAK_MEDSA (Q9ZT05) Photosystem I reaction center subunit psaK, chloroplast|
           precursor (Photosystem I subunit X) (PSI-K)
          Length = 129

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +2

Query: 200 LKSNDPVGFNLVDVLAWGSIGHIV 271
           L++ DP GF L D LA G++GHI+
Sbjct: 93  LQTGDPAGFTLADTLACGTVGHII 116

>ERG6_CANGA (Q6FRZ7) Sterol 24-C-methyltransferase (EC 2.1.1.41)|
           (Delta(24)-sterol C-methyltransferase)
          Length = 372

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 23/73 (31%), Positives = 36/73 (49%)
 Frame = +2

Query: 62  TGLSLVMGRFVFFNFQRENVAKQVPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDV 241
           TGL+ ++ +    N QRE V+K +   +GKT  EA D R +++     S   V  +  + 
Sbjct: 26  TGLTALLSKNR--NAQREAVSKYLRHWDGKTDKEAEDRRLEDYNEATHSYYNVVTDFYE- 82

Query: 242 LAWGSIGHIVAYY 280
             WGS  H   +Y
Sbjct: 83  YGWGSSFHFSRFY 95

>ELF1_DROME (P13002) Protein grainyhead (Protein grainy-head) (DNA-binding|
           protein ELF-1) (Element I-binding activity)
           (Transcription factor NTF-1)
          Length = 1333

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = -3

Query: 459 PSHIHTYILMMVHHQRIQN**KHGGLQQQSRSGRHAGRQGRRTDQPKKGGSYPLLVVA 286
           P    T +L  VHH + Q   +    QQQ +   H  +Q    D    GG+ PL   A
Sbjct: 733 PPPATTTVLTSVHHHQQQQQQQQQHQQQQQQQQHHQQQQHHSQDGKSNGGATPLYAKA 790

>XYNC_FIBSU (P35811) Endo-1,4-beta-xylanase C precursor (EC 3.2.1.8) (Xylanase|
           C) (1,4-beta-D-xylan xylanohydrolase C)
          Length = 608

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +2

Query: 143 NGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAW-----GSIGHIVAYYILATT 295
           + KT+ E G +   EF  +      VG++ + +  W     G+   +V YY++  T
Sbjct: 94  SNKTYKELGGDMIAEFKLVKSGAQNVGYSYIGIYGWMEGVSGTPSQLVEYYVIDNT 149

>DNAJ_HYDTH (Q75VW3) Chaperone protein dnaJ|
          Length = 356

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 113 ENVAKQVPEQNGKTHFEAGDERAKEFAGILKSND 214
           EN +++  E N   H  + +ER KE+  ILKS D
Sbjct: 40  ENASEKFKEINEAYHILSDEERRKEYDRILKSGD 73

>TLL1_BRARE (O57460) Dorsal-ventral patterning tolloid-like protein 1 precursor|
           (EC 3.4.24.-) (Mini fin protein)
          Length = 1022

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
 Frame = -3

Query: 381 QQQSRSGRHAGRQGRRTDQPKKGGSYPLLVVARM**ATMWPMEPHARTST------RLKP 220
           Q   R G  +G  G      K+G  Y LL   R      WP+      S+      R+  
Sbjct: 87  QTHGRQGHTSGGLGEHVPTKKRGSLYLLLDRIRRLGFESWPVNSSKDVSSIKTGIRRVNS 146

Query: 219 TGSLDLRIPANSLARSSPASKW---VLPFCSGTCFATFSRWKLKKTKR 85
             ++  R+P  + +R+     W   V+P+  G  F    R  LK+  R
Sbjct: 147 ARNVKSRVPRAATSRAEKI--WPGGVIPYVIGGNFTGSQRAMLKQAMR 192


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,509,205
Number of Sequences: 219361
Number of extensions: 883302
Number of successful extensions: 2875
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2870
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)