>SUDA_EMENI (Q00737) Chromosome segregation protein sudA (DA-box protein sudA)|
          Length = 1211

 Score = 32.7 bits (73), Expect = 0.48
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 186 AEQQKYLRDANDARDKVYHILDSARDMIAQTEAEKDATKQDIGKDVYDYC 335
           AE  K + + N  R+K+  +LD   + +A+ E EKD  +    KD    C
Sbjct: 173 AESLKIMHETNSKREKIDELLDFINERLAELEEEKDELRNFQEKDKERRC 222

>LRP_CAEEL (Q04833) Low-density lipoprotein receptor-related protein precursor|
           (LRP)
          Length = 4753

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = -1

Query: 410 LELVKVGETGVVTPDELER 354
           LE+VK+GETG+V PDEL R
Sbjct: 821 LEVVKIGETGLVHPDELVR 839

>ATX1_HUMAN (P54253) Ataxin-1 (Spinocerebellar ataxia type 1 protein)|
          Length = 816

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +3

Query: 9   YLVLVVKLILPCLVPPSYPKAYIMSGDLVDLSPGQLHKLADLIHRQEVQKLQ 164
           +L +V  +  P   PP+ P  Y M G ++ L+ G+L K+ DL     +Q  +
Sbjct: 554 HLPVVQSVASPAAAPPTLPP-YFMKGSIIQLANGELKKVEDLKTEDFIQSAE 604

>PYRB_RALSO (Q8Y1L2) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate|
           transcarbamylase) (ATCase)
          Length = 323

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
 Frame = +3

Query: 222 ARDKVYHILDSARDMIAQTEAEKDATKQDI--GKDVYDYCTKAIGISLQFIRSYNTRLTY 395
           +RD + HILD+A+  ++ ++A+++  K  +  GK V+         +L F  S  TR T+
Sbjct: 26  SRDILTHILDTAKQFVSVSDADREVKKVPLLRGKSVF---------NLFFENSTRTRTTF 76

Query: 396 LDKLKTHSDDLI 431
               K  S D+I
Sbjct: 77  EIAAKRLSADVI 88

>VNSS_TSWV1 (P26002) Nonstructural protein NS-S|
          Length = 464

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 84  GDLVDLSPGQLHKLADLIHRQEVQKLQELEFNSYAEQQKYLRDAN 218
           G L  LSP QLH +  +++R ++    +L+        KY+  AN
Sbjct: 114 GHLKVLSPAQLHSIESIMNRSDITDRFQLQEKDIIPNDKYIEAAN 158

>RS2_AQUAE (O67809) 30S ribosomal protein S2|
          Length = 274

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 27/107 (25%), Positives = 47/107 (43%)
 Frame = +3

Query: 129 DLIHRQEVQKLQELEFNSYAEQQKYLRDANDARDKVYHILDSARDMIAQTEAEKDATKQD 308
           D++ ++EV+ L+  +     +    +RD     D ++ I+D+ R+ IA +EA K      
Sbjct: 127 DVLPKKEVRNLRR-KMEKLRKLYNGIRDMKKLPDVIW-IVDTVREKIAVSEARK------ 178

Query: 309 IGKDVYDYCTKAIGISLQFIRSYNTRLTYLDKLKTHSDDLIKQLKFL 449
                       +GI +  I   N   T +D     +DD IK +K L
Sbjct: 179 ------------LGIPIVAIADSNCDPTVIDYTIPGNDDAIKSIKLL 213

>MUTS_STRT2 (Q5M6I1) DNA mismatch repair protein mutS|
          Length = 852

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 16/67 (23%), Positives = 34/67 (50%)
 Frame = +3

Query: 60  YPKAYIMSGDLVDLSPGQLHKLADLIHRQEVQKLQELEFNSYAEQQKYLRDANDARDKVY 239
           Y   +++   L DL      KL   +HR ++++L  L+   + E + YL+ +   +  + 
Sbjct: 202 YDDVHLIGNSLTDLESSVASKLLQYVHRTQMRELSHLQKAQHYEIKDYLQMSYATKSSL- 260

Query: 240 HILDSAR 260
            +L++AR
Sbjct: 261 DLLENAR 267

>MUTS_STRT1 (Q5M1Z0) DNA mismatch repair protein mutS|
          Length = 852

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 16/67 (23%), Positives = 34/67 (50%)
 Frame = +3

Query: 60  YPKAYIMSGDLVDLSPGQLHKLADLIHRQEVQKLQELEFNSYAEQQKYLRDANDARDKVY 239
           Y   +++   L DL      KL   +HR ++++L  L+   + E + YL+ +   +  + 
Sbjct: 202 YDDVHLIGNSLTDLESSVASKLLQYVHRTQMRELSHLQKAQHYEIKDYLQMSYATKSSL- 260

Query: 240 HILDSAR 260
            +L++AR
Sbjct: 261 DLLENAR 267

>CAS1_MOUSE (P19228) Alpha-s1-casein precursor|
          Length = 313

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 22/90 (24%), Positives = 42/90 (46%)
 Frame = +3

Query: 30  LILPCLVPPSYPKAYIMSGDLVDLSPGQLHKLADLIHRQEVQKLQELEFNSYAEQQKYLR 209
           LIL CLV  ++    + S + V     Q H  ++ I +Q        EF +   +Q+ L 
Sbjct: 4   LILTCLVAAAFAMPRLHSRNAVSSQTQQQHSSSEEIFKQPKYLNLNQEFVNNMNRQRAL- 62

Query: 210 DANDARDKVYHILDSARDMIAQTEAEKDAT 299
              +  D++   +D+A +  A   A++D++
Sbjct: 63  -LTEQNDEIKVTMDAASEEQAMASAQEDSS 91

>ZN212_HUMAN (Q9UDV6) Zinc finger protein 212 (Zinc finger protein C2H2-150)|
          Length = 495

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
 Frame = +3

Query: 78  MSGDLVDLSPGQLHKLADLIHRQEVQKLQE------LEFNSYAEQQKYL 206
           M GDL +  PG  H    ++ +QE+Q  QE       EF+  AE+Q +L
Sbjct: 196 MLGDLEEEGPGGAHPAGGVMIKQELQYTQEGPADLPGEFSCIAEEQAFL 244

>SODM_ORYSA (Q43008) Superoxide dismutase [Mn], mitochondrial precursor (EC|
           1.15.1.1)
          Length = 231

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = -3

Query: 228 RGHHWRHGDTFVALHTS*TRALEASGLLVDGSDRLAYATALDLNQLGHLT*CKPWGSLGA 49
           R HH +H  T+VA +      L+A+    D    +   +A+  N  GH+     W +L  
Sbjct: 53  RLHHQKHHATYVANYNKALEQLDAAVAKGDAPAIVHLQSAIKFNGGGHVNHSIFWNNLKP 112

Query: 48  PSKEGSASPRAQ 13
            S+ G   P A+
Sbjct: 113 ISEGGGDPPHAK 124

>KIF5C_MOUSE (P28738) Kinesin heavy chain isoform 5C (Kinesin heavy chain|
           neuron-specific 2)
          Length = 956

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 123 LADLIHRQEVQKLQELEFNSYAE-QQKYLRDANDARDKVYHILDSARDMIAQTEAEKDAT 299
           L  L   +EV+K  E +  S+ E  QK L    D  ++   I+D  RD+  + + E++  
Sbjct: 689 LTRLQDAEEVKKALEQQMESHREAHQKQLSRLRDEIEEKQRIIDEIRDLNQKLQLEQERL 748

Query: 300 KQDIGK 317
             D  K
Sbjct: 749 SSDYNK 754

>GRPE_CANGA (Q6FPH2) GrpE protein homolog, mitochondrial precursor|
          Length = 231

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +3

Query: 87  DLVDLSPGQLHKLADLIHRQEVQKLQELEFNSYAEQQKYLRDANDARDKVYHILDSAR-- 260
           +  +L    L  +AD  + QEV K    +  SYA  QK+ +D  ++ D   H L + +  
Sbjct: 85  EAAELKDRLLRSVADFRNLQEVTKKDVEKAKSYA-LQKFAKDLLESVDNFGHALGAFKEE 143

Query: 261 DMIAQTEAEKDATKQDIGKDVYDYCTKAIGI 353
           D+    E     T   + +DV++   K  GI
Sbjct: 144 DLEKSKEISDLYTGVKMTRDVFEKTLKKYGI 174

>SODM1_MAIZE (P09233) Superoxide dismutase [Mn] 3.1, mitochondrial precursor (EC|
           1.15.1.1)
          Length = 235

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = -3

Query: 228 RGHHWRHGDTFVALHTS*TRALEASGLLVDGSDRLAYATALDLNQLGHLT*CKPWGSLGA 49
           R HH +H  T+VA +      LE +    D S  +    A+  N  GH+     W +L  
Sbjct: 57  RLHHQKHHATYVANYNKALEQLETAVSKGDASAVVQLQAAIKFNGGGHVNHSIFWKNL-K 115

Query: 48  PSKEGSASP 22
           P  EG   P
Sbjct: 116 PISEGGGEP 124

>CAR14_HUMAN (Q9BXL6) Caspase recruitment domain-containing protein 14|
           (CARD-containing MAGUK protein 2) (Carma 2)
          Length = 1004

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +3

Query: 111 QLHKLADLIHRQEVQKLQELEFNSYAEQQKYLRDANDARDKVYHILDSARDMIAQTEAEK 290
           Q  K+A  ++R++V  LQ        E QK        RD+ Y   DSA+  I+Q+  EK
Sbjct: 334 QKSKMACQLYREKVNALQA----QVCELQK-------ERDQAYSARDSAQREISQSLVEK 382

Query: 291 DATKQDI 311
           D+ ++ +
Sbjct: 383 DSLRRQV 389

>ATX1_RAT (Q63540) Ataxin-1 (Spinocerebellar ataxia type 1 protein homolog)|
          Length = 789

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 9   YLVLVVKLILPCLVPPSYPKAYIMSGDLVDLSPGQLHKLADLIHRQEVQKLQ 164
           +L +V  +  P    P+ P  Y M G ++ L+ G+L K+ DL     +Q  +
Sbjct: 527 HLPVVQSVASPAAASPTLPP-YFMKGSIIQLANGELKKVEDLKTEDFIQSAE 577

>CCRK_PONPY (Q5R7I7) Cell cycle-related kinase (EC 2.7.11.22)|
          Length = 346

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +3

Query: 72  YIMSGDLVDLSPGQLHKLADLIHRQ---EVQKLQELEFNSYAEQQK 200
           ++ +G++V L    L +L D I  Q   E++ LQE+E N Y  Q K
Sbjct: 23  HVETGEIVALKKVALRRLEDGIPNQALREIKALQEMEDNQYVVQLK 68

>VNSS_TSWVL (P26003) Nonstructural protein NS-S|
          Length = 467

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 84  GDLVDLSPGQLHKLADLIHRQEVQKLQELEFNSYAEQQKYLRDAN 218
           G L  LSP QLH +   ++R +++   +L+        +Y+  AN
Sbjct: 114 GHLKVLSPDQLHSIGSTMNRSDIKDRFQLQEKDIIPNDRYIEAAN 158

>ROCK1_BOVIN (Q8MIT6) Rho-associated protein kinase 1 (EC 2.7.11.1)|
           (Rho-associated, coiled-coil-containing protein kinase
           1) (p160 ROCK-1) (p160ROCK) (Fragment)
          Length = 441

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
 Frame = +3

Query: 117 HKLADLIHRQEVQKLQELEFNSYAEQQKYLRDANDARDKVYHILDSARDMIAQTEAEKDA 296
           HK+       + Q ++E +  +  E +K L++  DAR+K  + +       +  + +   
Sbjct: 98  HKVTKARLTDKHQSIEEAKSVAMCEMEKKLKEERDAREKAENRVVQIEKQCSMLDVDLKQ 157

Query: 297 TKQDI-----GKDVYDYCTKAIGISLQFIRSYNTRLTYLDKLKTHS 419
           ++Q +      KD  +   K   ++LQ  +  N RL   ++LKT +
Sbjct: 158 SQQKLEHLIENKDRMEDEVK--NLTLQLEQESNKRLLLQNELKTQA 201

>DNAK_CHLAB (Q8GH79) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 659

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
 Frame = +3

Query: 135 IHRQEVQKL-QELEFNSYAEQQKYLRDANDARDKVYHILDSARDMIAQTEAEKDATKQDI 311
           +   E+Q++  + E N   E+ K  R+A+D R++       A  MI + E      K++I
Sbjct: 505 LKEDEIQRMINDAEKNK--EEDKKRREASDVRNE-------ADSMIFRAEKAISDYKENI 555

Query: 312 GKDVYDYCTKAIGISLQFIRSYNTRLTYLDKLKTHSDDLIKQLKFLNPATQQK 470
            + +    TK I   ++ +RS        +K+K  SD+L + ++ +  A Q +
Sbjct: 556 PESL----TKEIEERIEKVRSALKEDAPTEKIKEASDELSRHMQKIGEAMQSQ 604

>Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71)|
          Length = 875

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
 Frame = +3

Query: 186 AEQQKYLRDANDARDKVYHILDSARDMIAQTE---------AEKDATKQDIGKDVYDYCT 338
           AE+   L  AN+ R ++   L  A   +A+TE            +  KQ+I K+  DY  
Sbjct: 544 AEKNGQLVAANEIRARLEQQLADATQQLAKTEQLLVQQQKSGPMETDKQEINKEESDYLL 603

Query: 339 KAIGISLQFIRSYNTRL 389
            A+ I  +  R  N  L
Sbjct: 604 TALDIMYKNARILNPNL 620

>ATX1_MOUSE (P54254) Ataxin-1 (Spinocerebellar ataxia type 1 protein homolog)|
          Length = 792

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 9   YLVLVVKLILPCLVPPSYPKAYIMSGDLVDLSPGQLHKLADLIHRQEVQKLQ 164
           +L +V  +  P    P+ P  Y M G ++ L+ G+L K+ DL     +Q  +
Sbjct: 529 HLPVVQSVASPTTASPTLPP-YFMKGSIIQLANGELKKVEDLKTEDFIQSAE 579

>ATG11_DEBHA (Q6BRA6) Autophagy-related protein 11|
          Length = 1282

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
 Frame = +3

Query: 120 KLADLIHRQEVQKLQE-------LEFNSYAEQQKYLRDANDARDKVYHILDSARDMIAQT 278
           K++D ++  E++K          L  N + E    +   ND +  V  +++S R+   + 
Sbjct: 222 KISDHLNTSELEKSSSFVSKTLPLVINKFNEMSASINSVNDDKVNVDKLIESLRNESIEN 281

Query: 279 EAEKDATKQDIGKDV 323
             + D   +DI KDV
Sbjct: 282 FKDYDTGSEDIIKDV 296

>NDPA_PHOPR (Q6LP12) Nucleoid-associated protein ndpA|
          Length = 337

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 219 DARDKVYHILDSARDMIAQTEAEKDATKQDIGKDVYDYC 335
           DA+++   ++ +  D  A +  +K+  KQ   K VYDYC
Sbjct: 194 DAKEQNQVLMQAVEDFCADSRLDKEE-KQQYRKQVYDYC 231

>Y401_BUCAP (Q8K9D9) Hypothetical protein BUsg401|
          Length = 219

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 264 CPVHCQGCDTPY 229
           CPVHC+ CDT Y
Sbjct: 31  CPVHCKWCDTKY 42

>PSB4_YEAST (P30657) Proteasome component PRE4 (EC 3.4.25.1) (Macropain subunit|
           PRE4) (Proteinase YSCE subunit PRE4) (Multicatalytic
           endopeptidase complex subunit PRE4)
          Length = 266

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
 Frame = +3

Query: 45  LVPPSYPKAYIMSGDLVDLSPGQLHKLADL---IHRQEVQKLQELEFNSYAEQQKYLRDA 215
           L+  +Y    + +G    ++   L K+ D    I +  VQ  +E   N  A +  Y RDA
Sbjct: 165 LLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVN--AMRVLYYRDA 222

Query: 216 NDARDKVYHILDSARDMIAQTEAEKDATKQDIGKDVYDYCTKAI 347
             +R+    I+D    +  +   + +  K D  KD+  Y T+ I
Sbjct: 223 RSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKDIKGYGTQKI 266

>KIF5C_HUMAN (O60282) Kinesin heavy chain isoform 5C (Kinesin heavy chain|
           neuron-specific 2)
          Length = 957

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 123 LADLIHRQEVQKLQELEFNSYAE-QQKYLRDANDARDKVYHILDSARDMIAQTEAEKDAT 299
           L  L   +E++K  E +  S+ E  QK L    D  ++   I+D  RD+  + + E++  
Sbjct: 690 LTRLQDAEEMKKALEQQMESHREAHQKQLSRLRDEIEEKQKIIDEIRDLNQKLQLEQEKL 749

Query: 300 KQDIGK 317
             D  K
Sbjct: 750 SSDYNK 755

>ICIA_YERPE (P58510) Chromosome initiation inhibitor (OriC replication|
           inhibitor)
          Length = 302

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 42  CLVPPSYPKAYIMSGDLVDLSPGQLHKLADLIHR 143
           C++P    +  + SG+L+DL+PG L +     HR
Sbjct: 238 CMIPHLQIEKELASGELIDLTPGLLQRRMLFWHR 271

>TTK_HUMAN (P33981) Dual specificity protein kinase TTK (EC 2.7.12.1)|
           (Phosphotyrosine picked threonine-protein kinase) (PYT)
          Length = 841

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 360 QFIRSYNTRLTYLDKLKTHSDDLIK 434
           Q + SY   + YL+KL+ HSD +I+
Sbjct: 547 QTLDSYRNEIAYLNKLQQHSDKIIR 571

>RBM6_HUMAN (P78332) RNA-binding protein 6 (RNA-binding motif protein 6)|
            (RNA-binding protein DEF-3) (Lung cancer antigen
            NY-LU-12) (Protein G16)
          Length = 1123

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +3

Query: 114  LHKLADLIHRQEVQKLQELEFNSYAEQQ-KYLRDANDARDKVYHILDSARDMIAQTEAEK 290
            LHK    IHR+  Q  QEL +    E++ K+    ND R+K+    DS      +   E 
Sbjct: 979  LHKQNLEIHRKIKQSEQELAYLERREREGKFKGRGNDRREKL-QSFDSPERKRIKYSRET 1037

Query: 291  DATKQDIGKDVYDYCTK 341
            D+ ++ + K+  D  +K
Sbjct: 1038 DSDRKLVDKEDIDTSSK 1054


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,604,980
Number of Sequences: 219361
Number of extensions: 1202486
Number of successful extensions: 4394
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4393
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)