ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal34k13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein 902 0.0
2gb|AC022468.5|AC022468 Homo sapiens chromosome 15 clone RP11-546... 44 0.41
3gb|AC163992.9| Mus musculus chromosome 1, clone RP23-193H10, com... 40 6.3
4gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14... 40 6.3
5ref|XM_457812.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 6.3
6ref|XM_781740.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.3
7emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS... 40 6.3
8emb|AL645823.12| Mouse DNA sequence from clone RP23-288I22 on ch... 40 6.3
9gb|AC021205.6| Homo sapiens BAC clone RP11-170N16 from 4, comple... 40 6.3
10gb|AF170801.5| Homo sapiens chromosome 8 clone CTA-392B3 map p23... 40 6.3
11gb|AC157217.2| Pan troglodytes BAC clone CH251-305B5 from chromo... 40 6.3
12gb|AC103776.3| Homo sapiens chromosome 8, clone RP11-42O14, comp... 40 6.3
13gb|AC019257.3| Homo sapiens chromosome 8, clone RP11-439C15, com... 40 6.3 
>emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein
          Length = 1334

 Score =  902 bits (455), Expect = 0.0
 Identities = 465/467 (99%), Gaps = 1/467 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   cccttaccttgtgctcgtggtgaagctgatccttcc-ttgcttggtgcccccaagctacc 63
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1   cccttaccttgtgctcgtggtgaagctgatccttccattgcttggtgcccccaagctacc 60

                                                                       
Query: 64  ccaaggcttacatcatgtcaggtgacctagttgatttaagtccagggcagttgcataagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ccaaggcttacatcatgtcaggtgacctagttgatttaagtccagggcagttgcataagc 120

                                                                       
Query: 124 tagccgatctgatccatcgacaagaagtccagaagcttcaagagctcgagttcaactcgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tagccgatctgatccatcgacaagaagtccagaagcttcaagagctcgagttcaactcgt 180

                                                                       
Query: 184 atgcagagcaacaaaagtatctccgtgacgccaatgatgcccgcgataaggtgtatcaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgcagagcaacaaaagtatctccgtgacgccaatgatgcccgcgataaggtgtatcaca 240

                                                                       
Query: 244 tccttgacagtgcacgggacatgatagcacaaaccgaggctgagaaggatgccaccaagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tccttgacagtgcacgggacatgatagcacaaaccgaggctgagaaggatgccaccaagc 300

                                                                       
Query: 304 aagatattggcaaggatgtctatgactactgcaccaaggccatcggaatatctctccaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagatattggcaaggatgtctatgactactgcaccaaggccatcggaatatctctccaat 360

                                                                       
Query: 364 tcatccggagttacaacacccgtctcacctaccttgacaagctcaagacccacagtgatg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcatccggagttacaacacccgtctcacctaccttgacaagctcaagacccacagtgatg 420

                                                          
Query: 424 atctcatcaagcagctaaagttcctcaatccagccacccaacagaag 470
           |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 421 atctcatcaagcagctaaagttcctcaatctagccacccaacagaag 467
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>gb|AC022468.5|AC022468 Homo sapiens chromosome 15 clone RP11-546B15 map 15q15, complete sequence
          Length = 183539

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 23     ggtgaagctgatccttccttgcttgg 48
              ||||||||||||||| ||||||||||
Sbjct: 139240 ggtgaagctgatcctgccttgcttgg 139265
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>gb|AC163992.9| Mus musculus chromosome 1, clone RP23-193H10, complete sequence
          Length = 198062

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     tagttgatttaagtccaggg 110
              ||||||||||||||||||||
Sbjct: 120328 tagttgatttaagtccaggg 120347
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>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence
          Length = 153766

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 404    gctcaagacccacagtgatg 423
              ||||||||||||||||||||
Sbjct: 115381 gctcaagacccacagtgatg 115400
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>ref|XM_457812.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0C03498g)
            partial mRNA
          Length = 3774

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  accaagcaagatattggcaa 316
            ||||||||||||||||||||
Sbjct: 1747 accaagcaagatattggcaa 1766
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>ref|XM_781740.1| PREDICTED: Strongylocentrotus purpuratus similar to aldehyde
           dehydrogenase 2, like (LOC581754), mRNA
          Length = 1767

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 ataagctagccgatctgatc 137
           ||||||||||||||||||||
Sbjct: 527 ataagctagccgatctgatc 546
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>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces
              hansenii
          Length = 1592360

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    accaagcaagatattggcaa 316
              ||||||||||||||||||||
Sbjct: 281073 accaagcaagatattggcaa 281092
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>emb|AL645823.12| Mouse DNA sequence from clone RP23-288I22 on chromosome 11 Contains the
              Gabra6 gene for subunit alpha 6 gamma-aminobutyric acid
              (GABA-A) receptor, complete sequence
          Length = 132024

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    caagatattggcaaggatgt 322
              ||||||||||||||||||||
Sbjct: 120263 caagatattggcaaggatgt 120244
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>gb|AC021205.6| Homo sapiens BAC clone RP11-170N16 from 4, complete sequence
          Length = 178917

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   ggaatatctctccaattcat 367
             ||||||||||||||||||||
Sbjct: 97894 ggaatatctctccaattcat 97913
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>gb|AF170801.5| Homo sapiens chromosome 8 clone CTA-392B3 map p23, complete sequence
          Length = 131992

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 404   gctcaagacccacagtgatg 423
             ||||||||||||||||||||
Sbjct: 29823 gctcaagacccacagtgatg 29842
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>gb|AC157217.2| Pan troglodytes BAC clone CH251-305B5 from chromosome unknown, complete
             sequence
          Length = 159245

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   ggaatatctctccaattcat 367
             ||||||||||||||||||||
Sbjct: 67066 ggaatatctctccaattcat 67047
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>gb|AC103776.3| Homo sapiens chromosome 8, clone RP11-42O14, complete sequence
          Length = 165995

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 404   gctcaagacccacagtgatg 423
             ||||||||||||||||||||
Sbjct: 32794 gctcaagacccacagtgatg 32813
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>gb|AC019257.3| Homo sapiens chromosome 8, clone RP11-439C15, complete sequence
          Length = 220201

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 404   gctcaagacccacagtgatg 423
             ||||||||||||||||||||
Sbjct: 73237 gctcaagacccacagtgatg 73218


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,123,128
Number of Sequences: 3902068
Number of extensions: 3123128
Number of successful extensions: 59658
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59638
Number of HSP's gapped (non-prelim): 19
length of query: 470
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 448
effective length of database: 17,147,199,772
effective search space: 7681945497856
effective search space used: 7681945497856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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