ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal34f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 107 4e-20
3emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa... 107 4e-20
4emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa... 107 4e-20
5dbj|AP006090.1| Lotus japonicus genomic DNA, chromosome 1, clone... 58 3e-05
6ref|XM_369157.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 46 0.13
7gb|AC010043.7| Drosophila melanogaster 3L BAC RP98-12K4 (Roswell... 44 0.51
8gb|AF311901.1|AF311901 Citrobacter rodentium strain DBS100 patho... 44 0.51
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.51
10dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.51
11dbj|AK069536.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.51
12dbj|AK066485.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.51
13gb|AE003551.3| Drosophila melanogaster chromosome 3L, section 34... 44 0.51
14gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge... 44 0.51
15gb|AC150307.3| Rhinolophus ferrumequinum clone VMRC7-71A7, compl... 42 2.0
16gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold 42 2.0
17gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 2.0
18emb|AL928952.15| Zebrafish DNA sequence from clone CH211-225G23,... 42 2.0
19gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 8.0
20gb|DQ149611.1| Human adenovirus type 31 hexon protein gene, comp... 40 8.0
21gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.0
22gb|AC120990.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.0
23gb|AC137980.4| Mus musculus BAC clone RP24-69K24 from chromosome... 40 8.0
24gb|DQ384109.2| Rhizobium leguminosarum bv. trifolii strain TA1 p... 40 8.0
25gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 8.0
26emb|Y17253.1|HAY17253 Human adenovirus type 31 hexon gene (partial) 40 8.0
27emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete ... 40 8.0
28gb|AC005865.1| Homo sapiens 12 PAC RPCI5-1063M23 (Roswell Park C... 40 8.0
29gb|AY032931.1| Chlamydomonas reinhardtii strain CC-620 probe 6 p... 40 8.0
30gb|AY032930.1| Chlamydomonas reinhardtii strain CC-621 probe 6 p... 40 8.0
31gb|AF161320.1|AF161320 Pseudomonas aeruginosa NRAMP protein MntH... 40 8.0
32dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
33gb|AE004516.1| Pseudomonas aeruginosa PAO1, section 77 of 529 of... 40 8.0
34gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 8.0
35gb|AC131681.4| Mus musculus BAC clone RP23-353O7 from 9, complet... 40 8.0 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  107 bits (54), Expect = 4e-20
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                            
Query: 229      gacgtcgccggcggcgctgccaattccacgcggcctccctactcgctcatctccgccgcc 288
                ||||||||||||||||| || |  || |||||||| || ||||||||||||||||||| |
Sbjct: 18961273 gacgtcgccggcggcgccgcgacgtcgacgcggccgccgtactcgctcatctccgccgac 18961214

                                          
Query: 289      aacgtgcagaaggcgatgcgcggcct 314
                ||||||||||||||||||||||||||
Sbjct: 18961213 aacgtgcagaaggcgatgcgcggcct 18961188



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 100/117 (85%), Gaps = 1/117 (0%)
 Strand = Plus / Minus

                                                                            
Query: 467      aggaatcttttaccatattaatantccgaggaagagagaagattatatgattggagcttg 526
                ||||||||||||||||| || |   |||||||||||||||||||||| |||||||| |||
Sbjct: 18959729 aggaatcttttaccatacta-tggaccgaggaagagagaagattatacgattggagtttg 18959671

                                                                         
Query: 527      gcgagaaatgggcatcctgaacgatatgtttggccttttgaagttgaccccatggag 583
                || |||| |||  | ||||| |||||||| |||||||| ||||| || |||||||||
Sbjct: 18959670 gcaagaagtggaaagcctgagcgatatgtctggcctttcgaagtcgatcccatggag 18959614



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                   
Query: 330      tgatcactatgggaggcttggaattaccagattagcgtcaaccgatgaggt 380
                |||||| |||||||||||||| || ||||||| ||| || |||||||||||
Sbjct: 18960808 tgatcattatgggaggcttgggatcaccagatcagcttctaccgatgaggt 18960758



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 14       ccatggctgccgttggcgtcacctccccggcggcgccg 51
                ||||||||||||||||||||  ||||||| ||||||||
Sbjct: 18961512 ccatggctgccgttggcgtcgtctccccgccggcgccg 18961475



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 428      tggaagaagaggaaatcagcaaggaacatgacct 461
                |||||||||||||||||| |||||| ||||||||
Sbjct: 18959861 tggaagaagaggaaatcaacaaggagcatgacct 18959828
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  107 bits (54), Expect = 4e-20
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                            
Query: 229      gacgtcgccggcggcgctgccaattccacgcggcctccctactcgctcatctccgccgcc 288
                ||||||||||||||||| || |  || |||||||| || ||||||||||||||||||| |
Sbjct: 18887500 gacgtcgccggcggcgccgcgacgtcgacgcggccgccgtactcgctcatctccgccgac 18887441

                                          
Query: 289      aacgtgcagaaggcgatgcgcggcct 314
                ||||||||||||||||||||||||||
Sbjct: 18887440 aacgtgcagaaggcgatgcgcggcct 18887415



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 100/117 (85%), Gaps = 1/117 (0%)
 Strand = Plus / Minus

                                                                            
Query: 467      aggaatcttttaccatattaatantccgaggaagagagaagattatatgattggagcttg 526
                ||||||||||||||||| || |   |||||||||||||||||||||| |||||||| |||
Sbjct: 18885956 aggaatcttttaccatacta-tggaccgaggaagagagaagattatacgattggagtttg 18885898

                                                                         
Query: 527      gcgagaaatgggcatcctgaacgatatgtttggccttttgaagttgaccccatggag 583
                || |||| |||  | ||||| |||||||| |||||||| ||||| || |||||||||
Sbjct: 18885897 gcaagaagtggaaagcctgagcgatatgtctggcctttcgaagtcgatcccatggag 18885841



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                   
Query: 330      tgatcactatgggaggcttggaattaccagattagcgtcaaccgatgaggt 380
                |||||| |||||||||||||| || ||||||| ||| || |||||||||||
Sbjct: 18887035 tgatcattatgggaggcttgggatcaccagatcagcttctaccgatgaggt 18886985



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 14       ccatggctgccgttggcgtcacctccccggcggcgccg 51
                ||||||||||||||||||||  ||||||| ||||||||
Sbjct: 18887739 ccatggctgccgttggcgtcgtctccccgccggcgccg 18887702



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 428      tggaagaagaggaaatcagcaaggaacatgacct 461
                |||||||||||||||||| |||||| ||||||||
Sbjct: 18886088 tggaagaagaggaaatcaacaaggagcatgacct 18886055
to top
>emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 153064

 Score =  107 bits (54), Expect = 4e-20
 Identities = 78/86 (90%)
 Strand = Plus / Plus

                                                                        
Query: 229  gacgtcgccggcggcgctgccaattccacgcggcctccctactcgctcatctccgccgcc 288
            ||||||||||||||||| || |  || |||||||| || ||||||||||||||||||| |
Sbjct: 9106 gacgtcgccggcggcgccgcgacgtcgacgcggccgccgtactcgctcatctccgccgac 9165

                                      
Query: 289  aacgtgcagaaggcgatgcgcggcct 314
            ||||||||||||||||||||||||||
Sbjct: 9166 aacgtgcagaaggcgatgcgcggcct 9191



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 100/117 (85%), Gaps = 1/117 (0%)
 Strand = Plus / Plus

                                                                         
Query: 467   aggaatcttttaccatattaatantccgaggaagagagaagattatatgattggagcttg 526
             ||||||||||||||||| || |   |||||||||||||||||||||| |||||||| |||
Sbjct: 10650 aggaatcttttaccatacta-tggaccgaggaagagagaagattatacgattggagtttg 10708

                                                                      
Query: 527   gcgagaaatgggcatcctgaacgatatgtttggccttttgaagttgaccccatggag 583
             || |||| |||  | ||||| |||||||| |||||||| ||||| || |||||||||
Sbjct: 10709 gcaagaagtggaaagcctgagcgatatgtctggcctttcgaagtcgatcccatggag 10765



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                               
Query: 330  tgatcactatgggaggcttggaattaccagattagcgtcaaccgatgaggt 380
            |||||| |||||||||||||| || ||||||| ||| || |||||||||||
Sbjct: 9571 tgatcattatgggaggcttgggatcaccagatcagcttctaccgatgaggt 9621



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 428   tggaagaagaggaaatcagcaaggaacatgacct 461
             |||||||||||||||||| |||||| ||||||||
Sbjct: 10518 tggaagaagaggaaatcaacaaggagcatgacct 10551



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                  
Query: 14   ccatggctgccgttggcgtcacctccccggcggcgccg 51
            ||||||||||||||||||||  ||||||| ||||||||
Sbjct: 8867 ccatggctgccgttggcgtcgtctccccgccggcgccg 8904
to top
>emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 151203

 Score =  107 bits (54), Expect = 4e-20
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                         
Query: 229   gacgtcgccggcggcgctgccaattccacgcggcctccctactcgctcatctccgccgcc 288
             ||||||||||||||||| || |  || |||||||| || ||||||||||||||||||| |
Sbjct: 57390 gacgtcgccggcggcgccgcgacgtcgacgcggccgccgtactcgctcatctccgccgac 57331

                                       
Query: 289   aacgtgcagaaggcgatgcgcggcct 314
             ||||||||||||||||||||||||||
Sbjct: 57330 aacgtgcagaaggcgatgcgcggcct 57305



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 100/117 (85%), Gaps = 1/117 (0%)
 Strand = Plus / Minus

                                                                         
Query: 467   aggaatcttttaccatattaatantccgaggaagagagaagattatatgattggagcttg 526
             ||||||||||||||||| || |   |||||||||||||||||||||| |||||||| |||
Sbjct: 55846 aggaatcttttaccatacta-tggaccgaggaagagagaagattatacgattggagtttg 55788

                                                                      
Query: 527   gcgagaaatgggcatcctgaacgatatgtttggccttttgaagttgaccccatggag 583
             || |||| |||  | ||||| |||||||| |||||||| ||||| || |||||||||
Sbjct: 55787 gcaagaagtggaaagcctgagcgatatgtctggcctttcgaagtcgatcccatggag 55731



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                
Query: 330   tgatcactatgggaggcttggaattaccagattagcgtcaaccgatgaggt 380
             |||||| |||||||||||||| || ||||||| ||| || |||||||||||
Sbjct: 56925 tgatcattatgggaggcttgggatcaccagatcagcttctaccgatgaggt 56875



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 14    ccatggctgccgttggcgtcacctccccggcggcgccg 51
             ||||||||||||||||||||  ||||||| ||||||||
Sbjct: 57629 ccatggctgccgttggcgtcgtctccccgccggcgccg 57592



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 428   tggaagaagaggaaatcagcaaggaacatgacct 461
             |||||||||||||||||| |||||| ||||||||
Sbjct: 55978 tggaagaagaggaaatcaacaaggagcatgacct 55945
to top
>dbj|AP006090.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT26D17, TM0154,
            complete sequence
          Length = 85795

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                 
Query: 497  gaagagagaagattatatgattggagcttggcgagaa 533
            ||||| |||||||||||||||||||||||||| ||||
Sbjct: 9489 gaagaaagaagattatatgattggagcttggccagaa 9525
to top
>ref|XM_369157.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00087.4) partial mRNA
          Length = 1425

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 215 ctgacgctggaaccgacgtcgccggcg 241
           ||||||||||||||||| |||||||||
Sbjct: 152 ctgacgctggaaccgacctcgccggcg 126
to top
>gb|AC010043.7| Drosophila melanogaster 3L BAC RP98-12K4 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 184657

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 11    ctcccatggctgccgttggcgt 32
             ||||||||||||||||||||||
Sbjct: 65036 ctcccatggctgccgttggcgt 65015
to top
>gb|AF311901.1|AF311901 Citrobacter rodentium strain DBS100 pathogenicity island LEE,
            complete sequence
          Length = 42001

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 497  gaagagagaagattatatgatt 518
            ||||||||||||||||||||||
Sbjct: 3961 gaagagagaagattatatgatt 3982
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 228     cgacgtcgccggcggcgctgccaatt 253
               |||||||||||||||||| |||||||
Sbjct: 2039612 cgacgtcgccggcggcgccgccaatt 2039587
to top
>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0041F13
          Length = 163230

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 228   cgacgtcgccggcggcgctgccaatt 253
             |||||||||||||||||| |||||||
Sbjct: 60474 cgacgtcgccggcggcgccgccaatt 60449
to top
>dbj|AK069536.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022B22, full
           insert sequence
          Length = 1296

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 228 cgacgtcgccggcggcgctgccaatt 253
           |||||||||||||||||| |||||||
Sbjct: 716 cgacgtcgccggcggcgccgccaatt 741
to top
>dbj|AK066485.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013068J24, full
           insert sequence
          Length = 1693

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 228 cgacgtcgccggcggcgctgccaatt 253
           |||||||||||||||||| |||||||
Sbjct: 809 cgacgtcgccggcggcgccgccaatt 834
to top
>gb|AE003551.3| Drosophila melanogaster chromosome 3L, section 34 of 83 of the complete
             sequence
          Length = 285860

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 11    ctcccatggctgccgttggcgt 32
             ||||||||||||||||||||||
Sbjct: 64835 ctcccatggctgccgttggcgt 64814
to top
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 108    cgctgcccgattcttcgcagca 129
              ||||||||||||||||||||||
Sbjct: 716417 cgctgcccgattcttcgcagca 716396
to top
>gb|AC150307.3| Rhinolophus ferrumequinum clone VMRC7-71A7, complete sequence
          Length = 137605

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 553   tgtttggccttttgaagttga 573
             |||||||||||||||||||||
Sbjct: 89268 tgtttggccttttgaagttga 89248
to top
>gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
          Length = 1756392

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 553     tgtttggccttttgaagttga 573
               |||||||||||||||||||||
Sbjct: 1708055 tgtttggccttttgaagttga 1708035
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 224     gaaccgacgtcgccggcggcg 244
               |||||||||||||||||||||
Sbjct: 2291736 gaaccgacgtcgccggcggcg 2291716
to top
>emb|AL928952.15| Zebrafish DNA sequence from clone CH211-225G23, complete sequence
          Length = 182212

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 438    ggaaatcagcaaggaacatga 458
              |||||||||||||||||||||
Sbjct: 166782 ggaaatcagcaaggaacatga 166762
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 39      cccggcggcgccggccaccg 58
               ||||||||||||||||||||
Sbjct: 3155225 cccggcggcgccggccaccg 3155206
to top
>gb|DQ149611.1| Human adenovirus type 31 hexon protein gene, complete cds
          Length = 2769

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 563  tttgaagttgaccccatgga 582
            ||||||||||||||||||||
Sbjct: 2623 tttgaagttgaccccatgga 2642
to top
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11,
              complete sequence
          Length = 204649

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    accgacgtcgccggcggcgc 245
              ||||||||||||||||||||
Sbjct: 161308 accgacgtcgccggcggcgc 161289
to top
>gb|AC120990.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0040E06, complete sequence
          Length = 160907

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 226   accgacgtcgccggcggcgc 245
             ||||||||||||||||||||
Sbjct: 13818 accgacgtcgccggcggcgc 13799
to top
>gb|AC137980.4| Mus musculus BAC clone RP24-69K24 from chromosome 9, complete sequence
          Length = 221263

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 428    tggaagaagaggaaatcagc 447
              ||||||||||||||||||||
Sbjct: 204048 tggaagaagaggaaatcagc 204029
to top
>gb|DQ384109.2| Rhizobium leguminosarum bv. trifolii strain TA1 polysaccharide
             biosynthesis region 2, complete sequence
          Length = 13899

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 524   ttggcgagaaatgggcatcc 543
             ||||||||||||||||||||
Sbjct: 13289 ttggcgagaaatgggcatcc 13308
to top
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     cggcggcgccggccaccgta 60
              ||||||||||||||||||||
Sbjct: 679818 cggcggcgccggccaccgta 679799
to top
>emb|Y17253.1|HAY17253 Human adenovirus type 31 hexon gene (partial)
          Length = 790

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 563 tttgaagttgaccccatgga 582
           ||||||||||||||||||||
Sbjct: 668 tttgaagttgaccccatgga 687
to top
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29
          Length = 300100

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     ctccccggcggcgccggcca 55
              ||||||||||||||||||||
Sbjct: 206713 ctccccggcggcgccggcca 206732
to top
>gb|AC005865.1| Homo sapiens 12 PAC RPCI5-1063M23 (Roswell Park Cancer Institute Human
              PAC Library) complete sequence
          Length = 112911

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      aggctccctcccatggctgc 23
              ||||||||||||||||||||
Sbjct: 111754 aggctccctcccatggctgc 111773
to top
>gb|AY032931.1| Chlamydomonas reinhardtii strain CC-620 probe 6 protein mRNA,
            complete cds
          Length = 2667

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 37   tccccggcggcgccggccac 56
            ||||||||||||||||||||
Sbjct: 1946 tccccggcggcgccggccac 1927
to top
>gb|AY032930.1| Chlamydomonas reinhardtii strain CC-621 probe 6 protein mRNA,
            complete cds
          Length = 2750

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 37   tccccggcggcgccggccac 56
            ||||||||||||||||||||
Sbjct: 1928 tccccggcggcgccggccac 1909
to top
>gb|AF161320.1|AF161320 Pseudomonas aeruginosa NRAMP protein MntH2 (mntH2) gene, complete
           cds
          Length = 1560

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 226 accgacgtcgccggcggcgc 245
           ||||||||||||||||||||
Sbjct: 240 accgacgtcgccggcggcgc 259
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 226      accgacgtcgccggcggcgc 245
                ||||||||||||||||||||
Sbjct: 28081143 accgacgtcgccggcggcgc 28081124
to top
>gb|AE004516.1| Pseudomonas aeruginosa PAO1, section 77 of 529 of the complete genome
          Length = 10476

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  accgacgtcgccggcggcgc 245
            ||||||||||||||||||||
Sbjct: 2862 accgacgtcgccggcggcgc 2843
to top
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 77      cctcgtccacccgccgccga 96
               ||||||||||||||||||||
Sbjct: 3241319 cctcgtccacccgccgccga 3241338
to top
>gb|AC131681.4| Mus musculus BAC clone RP23-353O7 from 9, complete sequence
          Length = 209929

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 428   tggaagaagaggaaatcagc 447
             ||||||||||||||||||||
Sbjct: 11103 tggaagaagaggaaatcagc 11084


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,550,170
Number of Sequences: 3902068
Number of extensions: 4550170
Number of successful extensions: 99409
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98713
Number of HSP's gapped (non-prelim): 692
length of query: 585
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 562
effective length of database: 17,143,297,704
effective search space: 9634533309648
effective search space used: 9634533309648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top