>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 445

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +2

Query: 8   EEFGRGDDLPGPPSYASQRRRHGSGAQDRQREPLQGDFLRRQRAQHSGRQANWPPHGAGW 187
           ++ GRGD+L GP +   Q ++     Q +Q++  Q      Q+ Q   R  +   H A  
Sbjct: 110 QQGGRGDELHGPGALQQQHQQQQQQQQQQQQQQQQ------QQQQQQQRPPHLVHHAANH 163

Query: 188 HVTPG 202
           H  PG
Sbjct: 164 HPGPG 168

>KR10C_HUMAN (P60413) Keratin-associated protein 10-12 (Keratin-associated|
           protein 10.12) (High sulfur keratin-associated protein
           10.12) (Keratin-associated protein 18-12)
           (Keratin-associated protein 18.12)
          Length = 245

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 195 VTCQPAPC--GGQFACLPECCARCRRRKSPCKGS 100
           VTC+P+PC  G   +C P CC +   + + C  S
Sbjct: 65  VTCEPSPCQSGCTSSCTPSCCQQSSCQPACCTSS 98

>KR109_HUMAN (P60411) Keratin-associated protein 10-9 (Keratin-associated|
           protein 10.9) (High sulfur keratin-associated protein
           10.9) (Keratin-associated protein 18-9)
           (Keratin-associated protein 18.9)
          Length = 292

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 195 VTCQPAPC--GGQFACLPECCARCRRRKSPCKGS 100
           VTC+P+PC  G   +C P CC +   + + C  S
Sbjct: 60  VTCEPSPCQSGCTSSCTPSCCQQSSCQPAYCTSS 93

>PO3F2_RAT (P56222) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 445

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 8   EEFGRGDDLPGPPSYASQRRRHGSGAQDRQREPLQGDFLRRQRAQHSGRQA--NWPPHGA 181
           ++ GRGD+L GP +   Q ++     Q +Q++  Q    ++QR  H    A  N P  GA
Sbjct: 110 QQGGRGDELHGPGALQQQHQQQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANNHPGPGA 169

>KR107_HUMAN (P60409) Keratin-associated protein 10-7 (Keratin-associated|
           protein 10.7) (High sulfur keratin-associated protein
           10.7) (Keratin-associated protein 18-7)
           (Keratin-associated protein 18.7)
          Length = 370

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 195 VTCQPAPC--GGQFACLPECCARCRRRKSPCKGS 100
           VTC+P+PC  G   +C P CC +   + + C  S
Sbjct: 70  VTCEPSPCQSGCTSSCTPSCCQQSSCQLACCASS 103

>KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-associated|
           protein 10.4) (High sulfur keratin-associated protein
           10.4) (Keratin-associated protein 18-4)
           (Keratin-associated protein 18.4)
          Length = 401

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 195 VTCQPAPC--GGQFACLPECCARCRRRKSPCKGS 100
           VTC+P+PC  G   +C P CC +   + + C  S
Sbjct: 70  VTCEPSPCQSGCTSSCTPSCCQQSSCQLACCASS 103

>KR106_HUMAN (P60371) Keratin-associated protein 10-6 (Keratin-associated|
           protein 10.6) (High sulfur keratin-associated protein
           10.6) (Keratin-associated protein 18-6)
           (Keratin-associated protein 18.6)
          Length = 365

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 195 VTCQPAPC--GGQFACLPECCARCRRRKSPCKGS 100
           VTC+P+PC  G   +C P CC +   + + C  S
Sbjct: 70  VTCEPSPCQSGCTSSCTPSCCQQSSCQLACCASS 103

>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 443

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = +2

Query: 8   EEFGRGDDLPGPPSYASQRRRHGSGAQDRQREPLQGDFLRRQRAQHSGRQANWPP----H 175
           ++ GRGD+L            HG GA  +Q +  Q    ++Q+ Q   +Q   PP    H
Sbjct: 110 QQGGRGDEL------------HGPGALQQQHQQQQQQQQQQQQQQQQQQQQQRPPHLVHH 157

Query: 176 GAGWHVTPG 202
            A  H  PG
Sbjct: 158 AANHHPGPG 166

>SSM1_YEAST (P53078) Protein SSM1|
          Length = 280

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +3

Query: 3   GLRNSDEATTCXDPRPMQANVGAMEAALRIANVNPYK-AIFFDDSVRNIQAGKRIGLHTV 179
           GL   D + T  D    + +V A E A++ + +  Y+ A F DDS +NI+ G ++G+ T 
Sbjct: 187 GLTYCDYSRT--DTLVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTC 244

Query: 180 L 182
           +
Sbjct: 245 I 245

>GMHB_CHLTE (Q8KAY7) D,D-heptose 1,7-bisphosphate phosphatase (EC 3.1.3.-)|
           (D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase)
          Length = 199

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 114 AIFFDDSVRNIQAGKRIGLHTVLVGTSHPGEGRGSRAGEHPQH 242
           + F  D + +++ G+R GL T+LV T H  E    +    P H
Sbjct: 136 SFFIGDKLIDVECGQRAGLKTILVRTGHNEESLCEQHQIFPDH 178

>KR105_HUMAN (P60370) Keratin-associated protein 10-5 (Keratin-associated|
           protein 10.5) (High sulfur keratin-associated protein
           10.5) (Keratin-associated protein 18-5)
           (Keratin-associated protein 18.5)
          Length = 271

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -3

Query: 189 CQPAPC--GGQFACLPECCARCRRRKSPCK 106
           C+P+PC  G   +C P CC       SPC+
Sbjct: 56  CEPSPCQSGCTSSCTPSCCQPACCASSPCQ 85

>K0355_HUMAN (O15063) Protein KIAA0355|
          Length = 1070

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
 Frame = +2

Query: 38   GPPSYAS--QRRRHGSGAQDRQREPLQGDFLRRQRAQHSGRQANWPPHGAGWHVTP 199
            GP   A+  QRR+H SG QD    P        +      +   WPP     H +P
Sbjct: 931  GPDLVAAVKQRRKHSSGEQDTSTLPSPPLLTTVEDVNQDNKTKTWPPKAPWQHPSP 986

>ANK3_HUMAN (Q12955) Ankyrin-3 (ANK-3) (Ankyrin-G)|
          Length = 4377

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = +3

Query: 15   SDEATTCXDPRPMQANVGAMEAALRIANVNPYKAIFFDDSVRNIQAGKRIGLHTVLVGTS 194
            +DE+T   +P P   + G M    R   ++  K  F ++ ++  Q    IG HT    + 
Sbjct: 3589 TDESTPTSEPNPFPFHEGKMFEMTRSGAIDMSKRDFVEERLQFFQ----IGEHTSEGKSG 3644

Query: 195  HPGEGRGSRAGEHPQHQ 245
              GEG  S     PQ Q
Sbjct: 3645 DQGEGDKSMVTATPQPQ 3661

>YIHX_SHIFL (P0A8Y4) Phosphatase yihX (EC 3.1.3.-)|
          Length = 199

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 84  LRIANVNPYKAIFFDDSVRNIQAGKRIGLHTVLV 185
           L+    +P   +FFDD+  NI+   ++G+ ++LV
Sbjct: 151 LQAEGFSPSDTVFFDDNADNIEGANQLGITSILV 184

>YIHX_ECOLI (P0A8Y3) Phosphatase yihX (EC 3.1.3.-)|
          Length = 199

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 84  LRIANVNPYKAIFFDDSVRNIQAGKRIGLHTVLV 185
           L+    +P   +FFDD+  NI+   ++G+ ++LV
Sbjct: 151 LQAEGFSPSDTVFFDDNADNIEGANQLGITSILV 184

>VE2_HPV45 (P36794) Regulatory protein E2|
          Length = 368

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +3

Query: 384 PQAQPDPTRRPRACRTTGDHH--VEFSIGREKTVSSTRRGELRKV 512
           P  Q   T+RPR C  T  HH  V   +      SST   + RKV
Sbjct: 241 PHIQTPATKRPRQCGLTEQHHGRVNTHVHNPLLCSSTSNNKRRKV 285

>SFR17_HUMAN (Q8TF01) Splicing factor, arginine/serine-rich 130|
           (Serine-arginine-rich splicing regulatory protein 130)
           (SRrp130) (SR-rich protein) (SR-related protein)
          Length = 805

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 35  PGPPSYASQRRRHGSGAQDRQREPL 109
           PGPP+    RR   S  +DRQR P+
Sbjct: 189 PGPPAPPQNRRERPSSFRDRQRSPI 213

>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated|
           protein 10.8) (High sulfur keratin-associated protein
           10.8) (Keratin-associated protein 18-8)
           (Keratin-associated protein 18.8)
          Length = 259

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 195 VTCQPAPC--GGQFACLPECCARCRRRKSPCKGS 100
           V+C+P+PC  G   +C P CC +   + + C  S
Sbjct: 79  VSCEPSPCQSGCTDSCTPSCCQQSSCQPACCTSS 112

>GMHB_PASMU (Q9CK98) D,D-heptose 1,7-bisphosphate phosphatase (EC 3.1.3.-)|
           (D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase)
          Length = 184

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 33  CXDPRPMQANVGAMEAALRIANVNPYKAIFFDDSVRNIQAGKRIGL-HTVLVGTSHP 200
           C  P+P     G +  A++  N++P  +    D V ++ AGK   + +TVLV T  P
Sbjct: 105 CRKPKP-----GMLLQAIKELNIDPNTSFMVGDKVEDMLAGKGAKIKNTVLVKTGKP 156

>NIT4_NEUCR (P28349) Nitrogen assimilation transcription factor nit-4|
          Length = 1090

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 177 PCGGQFACLPECCARCRRRKSPCKGS 100
           P   +  C+   C  CRRRKS C G+
Sbjct: 41  PTNQKRRCVSTACIACRRRKSKCDGA 66

>HAM_DROME (Q8I7Z8) Transcription factor hamlet|
          Length = 990

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 228 LQRVIRALHPGVTCQPAP-CGGQF 160
           LQR IRA H G  C P P CG  F
Sbjct: 295 LQRHIRAYHVGARCHPCPECGKTF 318

>NIRA_EMENI (P28348) Nitrogen assimilation transcription factor nirA|
          Length = 892

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 198 GVTCQPAPCGGQFACLPECCARCRRRKSPCKGS 100
           G +   AP   +  C+   C  CRRRKS C G+
Sbjct: 24  GTSTDNAPASKR-RCVSTACIACRRRKSKCDGN 55

>CAT8_YEAST (P39113) Regulatory protein CAT8|
          Length = 1433

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 192 TCQPAPCGGQFACLPECCARCRRRKSPCKGSR 97
           T  P P       + + C RCR +K+ C G R
Sbjct: 53  TASPTPLSTPIYRIAQACDRCRSKKTRCDGKR 84

>CP6G2_DROME (Q9V675) Probable cytochrome P450 6g2 (EC 1.14.-.-) (CYPVIG2)|
          Length = 519

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 473 FFPANAEFHVMITSSPAGSGTPGRIGLRLGY 381
           F P N + H   T  P G G  G IG R GY
Sbjct: 437 FSPENRKLHTPYTYMPFGLGPHGCIGERFGY 467


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,333,043
Number of Sequences: 219361
Number of extensions: 1325126
Number of successful extensions: 5337
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5329
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)