ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal34d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1INSM1_MOUSE (Q63ZV0) Insulinoma-associated protein 1 (Zinc finge... 28 4.8
2TFR2_MOUSE (Q9JKX3) Transferrin receptor protein 2 (TfR2) 28 6.3
3LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12) 28 6.3
4SNAI_MOUSE (Q02085) Zinc finger protein SNAI1 (Protein snail hom... 28 8.2

>INSM1_MOUSE (Q63ZV0) Insulinoma-associated protein 1 (Zinc finger protein IA-1)|
          Length = 521

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -1

Query: 176 HTPRPLEXGRKALRRPEPLLVNLASXKDEDGGRVGQRPLPDP 51
           H PRP+     A R PEP     A  ++  GG    R  P P
Sbjct: 322 HKPRPVPA---AARAPEPEAATRAEAREAAGGGSSDRDTPSP 360



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>TFR2_MOUSE (Q9JKX3) Transferrin receptor protein 2 (TfR2)|
          Length = 798

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 140 LRRPEPLLVNLASXKDEDGGRVGQRPLPDPEAY 42
           L+ P+P   N     D DG    Q PL DPE Y
Sbjct: 195 LQFPDPAHANTLHWVDADGSVQEQLPLEDPEVY 227



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>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)|
          Length = 918

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 236 LWSGCGCTIIREFXNIXITPHTPRPLEXGRKALR 135
           LW   G  ++ E  +  I P T +P++ GR +++
Sbjct: 105 LWDMVGRNVVLELISTKIHPRTKKPMQSGRVSIK 138



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>SNAI_MOUSE (Q02085) Zinc finger protein SNAI1 (Protein snail homolog) (Protein|
           sna)
          Length = 264

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -1

Query: 134 RPEPLLVNLASXKDEDGGRVGQRPLPDPEAYVGAKAEAAQDL 9
           R  P  V L S  DED G+  Q P P   A     + +A  L
Sbjct: 80  RESPKAVELTSLSDEDSGKSSQPPSPPSPAPSSFSSTSASSL 121


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,751,310
Number of Sequences: 219361
Number of extensions: 596461
Number of successful extensions: 1647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1647
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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