| Clone Name | baal34d05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470539.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1746 Score = 268 bits (135), Expect = 2e-68 Identities = 347/417 (83%), Gaps = 3/417 (0%) Strand = Plus / Plus Query: 140 atgtccattgaagaaaggaaaataagtttgataaacaggacgacttcgttaaatcctaat 199 |||||||| ||||| || | | ||||||||||||||| ||| ||| |||||||||| ||| Sbjct: 205 atgtccatcgaagagagaacattaagtttgataaacaagaccactgcgttaaatccaaat 264 Query: 200 gcggtagaatttgttccttcatgccttagatgtgtgagtgatgcttcaaacagatcggac 259 || ||||||||| ||||||| ||| |||| | | | ||||| |||||| ||||| ||| Sbjct: 265 gcacaagaatttgtaccttcatccctcagatctatcaatgatgtttcaaatagatcagac 324 Query: 260 acaaccaagattcctgtttcagagtcctcaaaggaaatcagcgcagaccaaccagagtct 319 ||| ||| |||| |||| |||| ||||| || || | | ||||| |||| ||| || Sbjct: 325 acatccaggatttctgtatcaggatcctccaaagacactattgcagatcaacaagatcct 384 Query: 320 gt---accaagcaaccctgatgaagaagcacatcggtattggcaacaacagcttccagat 376 || |||||| |||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 385 gttataccaagtaaccctgatgaagaagcacatcggtactggcaagaacagcttccagat 444 Query: 377 gatatcacccctgatttcaacgttcttggccaagatgagactcctggacctgacagtctt 436 ||||| |||||||||||||| ||||| || |||||||||| ||||||||||| | | || Sbjct: 445 gatattacccctgatttcaaagttctgggacaagatgagatgcctggacctgataatatt 504 Query: 437 tcactcacgggcttgtcaatgaatgatggctttggtgcttcattattttctccaaaccag 496 |||||||| ||||||||||| |||||| || ||||||||||| ||||||||||||||||| Sbjct: 505 tcactcactggcttgtcaataaatgatagcattggtgcttcactattttctccaaaccag 564 Query: 497 acatcaagaatgcagcaccatgcttctccatttgttagggacacgctaagtacacga 553 ||||| | |||| |||| ||||||||| ||| |||||||||| || || |||||| Sbjct: 565 acatcgaatttgcaacaccgtgcttctccttttattagggacactctgagcacacga 621 Score = 95.6 bits (48), Expect = 2e-16 Identities = 66/72 (91%) Strand = Plus / Plus Query: 589 agctactattatgagtcccactgcaagtactatgagtccaactgctgctccatgggtaaa 648 |||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||||| Sbjct: 669 agctactattatgagtccaactgcaagcgctatgagtccaactgcggctccgtgggtaaa 728 Query: 649 gacagtaagaaa 660 ||||||||||| Sbjct: 729 aacagtaagaaa 740
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 268 bits (135), Expect = 2e-68 Identities = 347/417 (83%), Gaps = 3/417 (0%) Strand = Plus / Plus Query: 140 atgtccattgaagaaaggaaaataagtttgataaacaggacgacttcgttaaatcctaat 199 |||||||| ||||| || | | ||||||||||||||| ||| ||| |||||||||| ||| Sbjct: 4187226 atgtccatcgaagagagaacattaagtttgataaacaagaccactgcgttaaatccaaat 4187285 Query: 200 gcggtagaatttgttccttcatgccttagatgtgtgagtgatgcttcaaacagatcggac 259 || ||||||||| ||||||| ||| |||| | | | ||||| |||||| ||||| ||| Sbjct: 4187286 gcacaagaatttgtaccttcatccctcagatctatcaatgatgtttcaaatagatcagac 4187345 Query: 260 acaaccaagattcctgtttcagagtcctcaaaggaaatcagcgcagaccaaccagagtct 319 ||| ||| |||| |||| |||| ||||| || || | | ||||| |||| ||| || Sbjct: 4187346 acatccaggatttctgtatcaggatcctccaaagacactattgcagatcaacaagatcct 4187405 Query: 320 gt---accaagcaaccctgatgaagaagcacatcggtattggcaacaacagcttccagat 376 || |||||| |||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 4187406 gttataccaagtaaccctgatgaagaagcacatcggtactggcaagaacagcttccagat 4187465 Query: 377 gatatcacccctgatttcaacgttcttggccaagatgagactcctggacctgacagtctt 436 ||||| |||||||||||||| ||||| || |||||||||| ||||||||||| | | || Sbjct: 4187466 gatattacccctgatttcaaagttctgggacaagatgagatgcctggacctgataatatt 4187525 Query: 437 tcactcacgggcttgtcaatgaatgatggctttggtgcttcattattttctccaaaccag 496 |||||||| ||||||||||| |||||| || ||||||||||| ||||||||||||||||| Sbjct: 4187526 tcactcactggcttgtcaataaatgatagcattggtgcttcactattttctccaaaccag 4187585 Query: 497 acatcaagaatgcagcaccatgcttctccatttgttagggacacgctaagtacacga 553 ||||| | |||| |||| ||||||||| ||| |||||||||| || || |||||| Sbjct: 4187586 acatcgaatttgcaacaccgtgcttctccttttattagggacactctgagcacacga 4187642 Score = 95.6 bits (48), Expect = 2e-16 Identities = 66/72 (91%) Strand = Plus / Plus Query: 589 agctactattatgagtcccactgcaagtactatgagtccaactgctgctccatgggtaaa 648 |||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||||| Sbjct: 4187690 agctactattatgagtccaactgcaagcgctatgagtccaactgcggctccgtgggtaaa 4187749 Query: 649 gacagtaagaaa 660 ||||||||||| Sbjct: 4187750 aacagtaagaaa 4187761
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 268 bits (135), Expect = 2e-68 Identities = 347/417 (83%), Gaps = 3/417 (0%) Strand = Plus / Plus Query: 140 atgtccattgaagaaaggaaaataagtttgataaacaggacgacttcgttaaatcctaat 199 |||||||| ||||| || | | ||||||||||||||| ||| ||| |||||||||| ||| Sbjct: 4187335 atgtccatcgaagagagaacattaagtttgataaacaagaccactgcgttaaatccaaat 4187394 Query: 200 gcggtagaatttgttccttcatgccttagatgtgtgagtgatgcttcaaacagatcggac 259 || ||||||||| ||||||| ||| |||| | | | ||||| |||||| ||||| ||| Sbjct: 4187395 gcacaagaatttgtaccttcatccctcagatctatcaatgatgtttcaaatagatcagac 4187454 Query: 260 acaaccaagattcctgtttcagagtcctcaaaggaaatcagcgcagaccaaccagagtct 319 ||| ||| |||| |||| |||| ||||| || || | | ||||| |||| ||| || Sbjct: 4187455 acatccaggatttctgtatcaggatcctccaaagacactattgcagatcaacaagatcct 4187514 Query: 320 gt---accaagcaaccctgatgaagaagcacatcggtattggcaacaacagcttccagat 376 || |||||| |||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 4187515 gttataccaagtaaccctgatgaagaagcacatcggtactggcaagaacagcttccagat 4187574 Query: 377 gatatcacccctgatttcaacgttcttggccaagatgagactcctggacctgacagtctt 436 ||||| |||||||||||||| ||||| || |||||||||| ||||||||||| | | || Sbjct: 4187575 gatattacccctgatttcaaagttctgggacaagatgagatgcctggacctgataatatt 4187634 Query: 437 tcactcacgggcttgtcaatgaatgatggctttggtgcttcattattttctccaaaccag 496 |||||||| ||||||||||| |||||| || ||||||||||| ||||||||||||||||| Sbjct: 4187635 tcactcactggcttgtcaataaatgatagcattggtgcttcactattttctccaaaccag 4187694 Query: 497 acatcaagaatgcagcaccatgcttctccatttgttagggacacgctaagtacacga 553 ||||| | |||| |||| ||||||||| ||| |||||||||| || || |||||| Sbjct: 4187695 acatcgaatttgcaacaccgtgcttctccttttattagggacactctgagcacacga 4187751 Score = 95.6 bits (48), Expect = 2e-16 Identities = 66/72 (91%) Strand = Plus / Plus Query: 589 agctactattatgagtcccactgcaagtactatgagtccaactgctgctccatgggtaaa 648 |||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||||| Sbjct: 4187799 agctactattatgagtccaactgcaagcgctatgagtccaactgcggctccgtgggtaaa 4187858 Query: 649 gacagtaagaaa 660 ||||||||||| Sbjct: 4187859 aacagtaagaaa 4187870
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 268 bits (135), Expect = 2e-68 Identities = 347/417 (83%), Gaps = 3/417 (0%) Strand = Plus / Plus Query: 140 atgtccattgaagaaaggaaaataagtttgataaacaggacgacttcgttaaatcctaat 199 |||||||| ||||| || | | ||||||||||||||| ||| ||| |||||||||| ||| Sbjct: 87863 atgtccatcgaagagagaacattaagtttgataaacaagaccactgcgttaaatccaaat 87922 Query: 200 gcggtagaatttgttccttcatgccttagatgtgtgagtgatgcttcaaacagatcggac 259 || ||||||||| ||||||| ||| |||| | | | ||||| |||||| ||||| ||| Sbjct: 87923 gcacaagaatttgtaccttcatccctcagatctatcaatgatgtttcaaatagatcagac 87982 Query: 260 acaaccaagattcctgtttcagagtcctcaaaggaaatcagcgcagaccaaccagagtct 319 ||| ||| |||| |||| |||| ||||| || || | | ||||| |||| ||| || Sbjct: 87983 acatccaggatttctgtatcaggatcctccaaagacactattgcagatcaacaagatcct 88042 Query: 320 gt---accaagcaaccctgatgaagaagcacatcggtattggcaacaacagcttccagat 376 || |||||| |||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 88043 gttataccaagtaaccctgatgaagaagcacatcggtactggcaagaacagcttccagat 88102 Query: 377 gatatcacccctgatttcaacgttcttggccaagatgagactcctggacctgacagtctt 436 ||||| |||||||||||||| ||||| || |||||||||| ||||||||||| | | || Sbjct: 88103 gatattacccctgatttcaaagttctgggacaagatgagatgcctggacctgataatatt 88162 Query: 437 tcactcacgggcttgtcaatgaatgatggctttggtgcttcattattttctccaaaccag 496 |||||||| ||||||||||| |||||| || ||||||||||| ||||||||||||||||| Sbjct: 88163 tcactcactggcttgtcaataaatgatagcattggtgcttcactattttctccaaaccag 88222 Query: 497 acatcaagaatgcagcaccatgcttctccatttgttagggacacgctaagtacacga 553 ||||| | |||| |||| ||||||||| ||| |||||||||| || || |||||| Sbjct: 88223 acatcgaatttgcaacaccgtgcttctccttttattagggacactctgagcacacga 88279 Score = 95.6 bits (48), Expect = 2e-16 Identities = 66/72 (91%) Strand = Plus / Plus Query: 589 agctactattatgagtcccactgcaagtactatgagtccaactgctgctccatgggtaaa 648 |||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||||| Sbjct: 88327 agctactattatgagtccaactgcaagcgctatgagtccaactgcggctccgtgggtaaa 88386 Query: 649 gacagtaagaaa 660 ||||||||||| Sbjct: 88387 aacagtaagaaa 88398
>dbj|AK070967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067F09, full insert sequence Length = 3799 Score = 268 bits (135), Expect = 2e-68 Identities = 347/417 (83%), Gaps = 3/417 (0%) Strand = Plus / Plus Query: 140 atgtccattgaagaaaggaaaataagtttgataaacaggacgacttcgttaaatcctaat 199 |||||||| ||||| || | | ||||||||||||||| ||| ||| |||||||||| ||| Sbjct: 2027 atgtccatcgaagagagaacattaagtttgataaacaagaccactgcgttaaatccaaat 2086 Query: 200 gcggtagaatttgttccttcatgccttagatgtgtgagtgatgcttcaaacagatcggac 259 || ||||||||| ||||||| ||| |||| | | | ||||| |||||| ||||| ||| Sbjct: 2087 gcacaagaatttgtaccttcatccctcagatctatcaatgatgtttcaaatagatcagac 2146 Query: 260 acaaccaagattcctgtttcagagtcctcaaaggaaatcagcgcagaccaaccagagtct 319 ||| ||| |||| |||| |||| ||||| || || | | ||||| |||| ||| || Sbjct: 2147 acatccaggatttctgtatcaggatcctccaaagacactattgcagatcaacaagatcct 2206 Query: 320 gt---accaagcaaccctgatgaagaagcacatcggtattggcaacaacagcttccagat 376 || |||||| |||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 2207 gttataccaagtaaccctgatgaagaagcacatcggtactggcaagaacagcttccagat 2266 Query: 377 gatatcacccctgatttcaacgttcttggccaagatgagactcctggacctgacagtctt 436 ||||| |||||||||||||| ||||| || |||||||||| ||||||||||| | | || Sbjct: 2267 gatattacccctgatttcaaagttctgggacaagatgagatgcctggacctgataatatt 2326 Query: 437 tcactcacgggcttgtcaatgaatgatggctttggtgcttcattattttctccaaaccag 496 |||||||| ||||||||||| |||||| || ||||||||||| ||||||||||||||||| Sbjct: 2327 tcactcactggcttgtcaataaatgatagcattggtgcttcactattttctccaaaccag 2386 Query: 497 acatcaagaatgcagcaccatgcttctccatttgttagggacacgctaagtacacga 553 ||||| | |||| |||| ||||||||| ||| |||||||||| || || |||||| Sbjct: 2387 acatcgaatttgcaacaccgtgcttctccttttattagggacactctgagcacacga 2443 Score = 95.6 bits (48), Expect = 2e-16 Identities = 66/72 (91%) Strand = Plus / Plus Query: 589 agctactattatgagtcccactgcaagtactatgagtccaactgctgctccatgggtaaa 648 |||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||||| Sbjct: 2491 agctactattatgagtccaactgcaagcgctatgagtccaactgcggctccgtgggtaaa 2550 Query: 649 gacagtaagaaa 660 ||||||||||| Sbjct: 2551 aacagtaagaaa 2562
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 268 bits (135), Expect = 2e-68 Identities = 347/417 (83%), Gaps = 3/417 (0%) Strand = Plus / Plus Query: 140 atgtccattgaagaaaggaaaataagtttgataaacaggacgacttcgttaaatcctaat 199 |||||||| ||||| || | | ||||||||||||||| ||| ||| |||||||||| ||| Sbjct: 15841 atgtccatcgaagagagaacattaagtttgataaacaagaccactgcgttaaatccaaat 15900 Query: 200 gcggtagaatttgttccttcatgccttagatgtgtgagtgatgcttcaaacagatcggac 259 || ||||||||| ||||||| ||| |||| | | | ||||| |||||| ||||| ||| Sbjct: 15901 gcacaagaatttgtaccttcatccctcagatctatcaatgatgtttcaaatagatcagac 15960 Query: 260 acaaccaagattcctgtttcagagtcctcaaaggaaatcagcgcagaccaaccagagtct 319 ||| ||| |||| |||| |||| ||||| || || | | ||||| |||| ||| || Sbjct: 15961 acatccaggatttctgtatcaggatcctccaaagacactattgcagatcaacaagatcct 16020 Query: 320 gt---accaagcaaccctgatgaagaagcacatcggtattggcaacaacagcttccagat 376 || |||||| |||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 16021 gttataccaagtaaccctgatgaagaagcacatcggtactggcaagaacagcttccagat 16080 Query: 377 gatatcacccctgatttcaacgttcttggccaagatgagactcctggacctgacagtctt 436 ||||| |||||||||||||| ||||| || |||||||||| ||||||||||| | | || Sbjct: 16081 gatattacccctgatttcaaagttctgggacaagatgagatgcctggacctgataatatt 16140 Query: 437 tcactcacgggcttgtcaatgaatgatggctttggtgcttcattattttctccaaaccag 496 |||||||| ||||||||||| |||||| || ||||||||||| ||||||||||||||||| Sbjct: 16141 tcactcactggcttgtcaataaatgatagcattggtgcttcactattttctccaaaccag 16200 Query: 497 acatcaagaatgcagcaccatgcttctccatttgttagggacacgctaagtacacga 553 ||||| | |||| |||| ||||||||| ||| |||||||||| || || |||||| Sbjct: 16201 acatcgaatttgcaacaccgtgcttctccttttattagggacactctgagcacacga 16257 Score = 95.6 bits (48), Expect = 2e-16 Identities = 66/72 (91%) Strand = Plus / Plus Query: 589 agctactattatgagtcccactgcaagtactatgagtccaactgctgctccatgggtaaa 648 |||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||||| Sbjct: 16305 agctactattatgagtccaactgcaagcgctatgagtccaactgcggctccgtgggtaaa 16364 Query: 649 gacagtaagaaa 660 ||||||||||| Sbjct: 16365 aacagtaagaaa 16376
>dbj|AK068487.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156N12, full insert sequence Length = 2169 Score = 240 bits (121), Expect = 5e-60 Identities = 205/233 (87%) Strand = Plus / Plus Query: 321 taccaagcaaccctgatgaagaagcacatcggtattggcaacaacagcttccagatgata 380 ||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct: 582 taccaagtaaccctgatgaagaagcacatcggtactggcaagaacagcttccagatgata 641 Query: 381 tcacccctgatttcaacgttcttggccaagatgagactcctggacctgacagtctttcac 440 | |||||||||||||| ||||| || |||||||||| ||||||||||| | | |||||| Sbjct: 642 ttacccctgatttcaaagttctgggacaagatgagatgcctggacctgataatatttcac 701 Query: 441 tcacgggcttgtcaatgaatgatggctttggtgcttcattattttctccaaaccagacat 500 |||| ||||||||||| |||||| || ||||||||||| ||||||||||||||||||||| Sbjct: 702 tcactggcttgtcaataaatgatagcattggtgcttcactattttctccaaaccagacat 761 Query: 501 caagaatgcagcaccatgcttctccatttgttagggacacgctaagtacacga 553 | | |||| |||| ||||||||| ||| |||||||||| || || |||||| Sbjct: 762 cgaatttgcaacaccgtgcttctccttttattagggacactctgagcacacga 814 Score = 95.6 bits (48), Expect = 2e-16 Identities = 66/72 (91%) Strand = Plus / Plus Query: 589 agctactattatgagtcccactgcaagtactatgagtccaactgctgctccatgggtaaa 648 |||||||||||||||||| |||||||| |||||||||||||||| ||||| |||||||| Sbjct: 862 agctactattatgagtccaactgcaagcgctatgagtccaactgcggctccgtgggtaaa 921 Query: 649 gacagtaagaaa 660 ||||||||||| Sbjct: 922 aacagtaagaaa 933 Score = 75.8 bits (38), Expect = 2e-10 Identities = 116/142 (81%) Strand = Plus / Plus Query: 140 atgtccattgaagaaaggaaaataagtttgataaacaggacgacttcgttaaatcctaat 199 |||||||| ||||| || | | ||||||||||||||| ||| ||| |||||||||| ||| Sbjct: 398 atgtccatcgaagagagaacattaagtttgataaacaagaccactgcgttaaatccaaat 457 Query: 200 gcggtagaatttgttccttcatgccttagatgtgtgagtgatgcttcaaacagatcggac 259 || ||||||||| ||||||| ||| |||| | | | ||||| |||||| ||||| ||| Sbjct: 458 gcacaagaatttgtaccttcatccctcagatctatcaatgatgtttcaaatagatcagac 517 Query: 260 acaaccaagattcctgtttcag 281 ||| ||| |||| |||| |||| Sbjct: 518 acatccaggatttctgtatcag 539
>emb|AL355304.12| Human DNA sequence from clone RP11-439L18 on chromosome 6q23.2-24.3 Contains two putative novel genes, part of a novel gene (FLJ32928) and two CpG islands, complete sequence Length = 76581 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 149 gaagaaaggaaaataagtttgataa 173 |||||||| |||||||||||||||| Sbjct: 10394 gaagaaagaaaaataagtttgataa 10418
>emb|AL158205.12| Human DNA sequence from clone RP11-177F4 on chromosome 9 Contains a CpG island, complete sequence Length = 68171 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 aggaaaataagtttgataaac 175 ||||||||||||||||||||| Sbjct: 10126 aggaaaataagtttgataaac 10146
>gb|AF011889.1|AF011889 Human Xq28 cosmids U126G1, U142F2, U69B6, U145C10, U169A5, U84H1, U24D12, U80A7, U153E6, L35485, and R7-163A8 containing iduronate 2-sulfatase gene and pseudogene, complete sequence Length = 326663 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 21 cgagaggaggagcagcggaggcggagaag 49 ||||||||||||||| ||||| ||||||| Sbjct: 302140 cgagaggaggagcagaggaggaggagaag 302112
>emb|AL844854.6| Mouse DNA sequence from clone RP23-368I1 on chromosome 2, complete sequence Length = 185135 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 145 cattgaagaaaggaaaataag 165 ||||||||||||||||||||| Sbjct: 66471 cattgaagaaaggaaaataag 66451
>gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0064E13, complete sequence Length = 150158 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 gaggaggagcagcggaggcggaga 47 |||||||||||||||||| ||||| Sbjct: 55982 gaggaggagcagcggagggggaga 56005
>gb|AC111110.21| Mus musculus chromosome 1, clone RP23-201B13, complete sequence Length = 246043 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 tcatgccttagatgtgtgagtgat 241 ||||||||||||||||| |||||| Sbjct: 38697 tcatgccttagatgtgtcagtgat 38674
>gb|AC153600.8| Mus musculus 6 BAC RP23-380C10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 194848 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 ctttggtgcttcattatttt 485 |||||||||||||||||||| Sbjct: 155109 ctttggtgcttcattatttt 155090 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 608 actgcaagtactatgagtcc 627 |||||||||||||||||||| Sbjct: 13883 actgcaagtactatgagtcc 13902
>gb|AC112146.3| Mus musculus BAC clone RP23-101G11 from 12, complete sequence Length = 188819 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 gaggcggagaagcaaggaga 57 |||||||||||||||||||| Sbjct: 89131 gaggcggagaagcaaggaga 89112
>gb|AC092637.2| Homo sapiens BAC clone RP11-358M3 from 7, complete sequence Length = 126643 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 tgcttcattattttctccaa 491 |||||||||||||||||||| Sbjct: 62810 tgcttcattattttctccaa 62791
>emb|Z95329.1|HS522O2 Human DNA sequence from clone RP3-522O2 on chromosome 6q21 Contains the 3' end of the BVES gene for blood vessel epicardial substance and part of the gene for a novel protein similar to FLJ12457, complete sequence Length = 102837 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 tgaagaaaggaaaataagtttgat 171 |||||| ||||||||||||||||| Sbjct: 34102 tgaagagaggaaaataagtttgat 34125
>emb|AL596184.9| Human DNA sequence from clone CTD-2552G1 on chromosome 6, complete sequence Length = 65978 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 149 gaagaaaggaaaataagtttgataaaca 176 ||||||| ||||||||||||| |||||| Sbjct: 60338 gaagaaaagaaaataagtttggtaaaca 60311
>emb|AL590240.5| Human DNA sequence from clone RP11-266I3 on chromosome X Contains a likely ortholog of mouse hepatoma-derived growth factor related protein 3 pseudogene (HDGFRP3), a novel protein similar to PAGE-5 protein (LOC203569), a novel protein similar to PAGE-5 protein (LOC139795), gene FLJ20434, a cytochrome c oxidase I (MTCO1) pseudogene, a G antigen, family D pseudogene and a CpG island, complete sequence Length = 130005 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 tgtcaaattctgaattctgc 111 |||||||||||||||||||| Sbjct: 127627 tgtcaaattctgaattctgc 127646
>emb|AL449403.11| Human DNA sequence from clone RP11-569G13 on chromosome 9 Contains a eukaryotic translation initiation factor 4B (EIF4B) pseudogene and part of a novel gene, complete sequence Length = 173916 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 accatgcttctccatttgtt 532 |||||||||||||||||||| Sbjct: 63243 accatgcttctccatttgtt 63224
>emb|AL031054.1|HS48G12 Human DNA sequence from clone RP1-48G12 on chromosome Xq27.1-27.3 Contains a CpG island, complete sequence Length = 199016 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 ctgaattctgctgaattgct 120 |||||||||||||||||||| Sbjct: 24318 ctgaattctgctgaattgct 24299
>emb|BX120000.8| Zebrafish DNA sequence from clone CH211-214C13 in linkage group 17, complete sequence Length = 214728 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 tgtgagtgatgcttcaaaca 251 |||||||||||||||||||| Sbjct: 4303 tgtgagtgatgcttcaaaca 4284
>gb|AC155328.5| Mus musculus 6 BAC RP24-75K10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 216930 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 608 actgcaagtactatgagtcc 627 |||||||||||||||||||| Sbjct: 96821 actgcaagtactatgagtcc 96840
>gb|AC073650.44| Homo sapiens 12 BAC RP11-44F24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 91200 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 agagtcctcaaaggaaatca 299 |||||||||||||||||||| Sbjct: 48462 agagtcctcaaaggaaatca 48481
>gb|AC110266.15| Mus musculus chromosome 1, clone RP23-319C1, complete sequence Length = 177482 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 tcatgccttagatgtgtgagtgat 241 ||||||||||||||||| |||||| Sbjct: 136466 tcatgccttagatgtgtcagtgat 136443
>emb|AL845457.16| Mouse DNA sequence from clone RP23-34E24 on chromosome 2, complete sequence Length = 221009 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 agaatgcagcaccatgcttc 522 |||||||||||||||||||| Sbjct: 19083 agaatgcagcaccatgcttc 19064
>gb|AC155244.2| Mus musculus BAC clone RP24-318B2 from 13, complete sequence Length = 198847 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 153 aaaggaaaataagtttgataaaca 176 |||||||||| ||||||||||||| Sbjct: 190828 aaaggaaaatgagtttgataaaca 190851
>gb|AC138306.4| Mus musculus BAC clone RP24-240E9 from 16, complete sequence Length = 170196 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 tgcttcattattttctccaa 491 |||||||||||||||||||| Sbjct: 121681 tgcttcattattttctccaa 121700
>gb|AC154781.2| Mus musculus BAC clone RP24-463K5 from 16, complete sequence Length = 173258 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 tgcttcattattttctccaa 491 |||||||||||||||||||| Sbjct: 33060 tgcttcattattttctccaa 33079
>gb|AC145082.10| Mus musculus chromosome 3, clone RP24-333B11, complete sequence Length = 168482 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 tcaagaatgcagcaccatgc 519 |||||||||||||||||||| Sbjct: 41067 tcaagaatgcagcaccatgc 41048
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 gaggaggagcagcggaggcggaga 47 |||||||||||||||||| ||||| Sbjct: 20331723 gaggaggagcagcggagggggaga 20331746
>gb|AC163743.6| Mus musculus BAC clone RP23-415J4 from chromosome 13, complete sequence Length = 198305 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 153 aaaggaaaataagtttgataaaca 176 |||||||||| ||||||||||||| Sbjct: 70908 aaaggaaaatgagtttgataaaca 70931
>gb|J03639.1|HUMDBLTP Human DBL oncogene encoding a transforming protein mRNA, complete cds Length = 2534 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 gcgagggcgagaggaggagcagcg 37 ||||||||| |||||||||||||| Sbjct: 176 gcgagggcgggaggaggagcagcg 199 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,748,180 Number of Sequences: 3902068 Number of extensions: 6748180 Number of successful extensions: 137898 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 137643 Number of HSP's gapped (non-prelim): 248 length of query: 661 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 638 effective length of database: 17,143,297,704 effective search space: 10937423935152 effective search space used: 10937423935152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)