ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal34c20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF227240.1|AF227240 Rabbit oral papillomavirus, complete genome 46 0.11
2gb|M19497.1|RAPO1 Rabbit oral papillomavirus DNA fragment with E... 46 0.11
3ref|XM_720090.1| Plasmodium yoelii yoelii str. 17XNL neurofilame... 42 1.7
4gb|AC150391.2| Branchiostoma floridae clone CH302-119J21, comple... 40 6.6
5gb|AY234384.1|AY234384S1 Rubrivivax gelatinosus strain S1 5' reg... 40 6.6
6gb|AC159991.9| Mus musculus chromosome 1, clone RP23-413H17, com... 40 6.6
7gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118... 40 6.6
8ref|XM_745197.1| Aspergillus fumigatus Af293 hypothetical protei... 40 6.6
9emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.6
10emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 40 6.6
11emb|BX640416.1| Bordetella pertussis strain Tohama I, complete g... 40 6.6
12dbj|AB243297.1| Rhizosolenia setigera RNA virus RsRNAV ORF-1, Rs... 40 6.6
13gb|AC110616.4| Homo sapiens BAC clone RP11-597I10 from 4, comple... 40 6.6
14ref|NM_205829.1| Xenopus tropicalis hypothetical protein MGC7584... 40 6.6
15gb|BC066129.1| Xenopus tropicalis hypothetical protein MGC75848,... 40 6.6
16emb|CR761091.2| Xenopus tropicalis finished cDNA, clone TEgg073i18 40 6.6 
>gb|AF227240.1|AF227240 Rabbit oral papillomavirus, complete genome
          Length = 7565

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 427  gcagagctgctccacaagacatt 449
            |||||||||||||||||||||||
Sbjct: 4252 gcagagctgctccacaagacatt 4274
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>gb|M19497.1|RAPO1 Rabbit oral papillomavirus DNA fragment with E2 and E4 protein gene
           homologues
          Length = 1519

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 427 gcagagctgctccacaagacatt 449
           |||||||||||||||||||||||
Sbjct: 875 gcagagctgctccacaagacatt 897
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>ref|XM_720090.1| Plasmodium yoelii yoelii str. 17XNL neurofilament protein H form H2
            (PY04830) partial mRNA
          Length = 2436

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 449  tgcttctacttctactggtga 469
            |||||||||||||||||||||
Sbjct: 2001 tgcttctacttctactggtga 1981



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 449  tgcttctacttctactggtga 469
            |||||||||||||||||||||
Sbjct: 1965 tgcttctacttctactggtga 1945



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 449  tgcttctacttctactggtga 469
            |||||||||||||||||||||
Sbjct: 1929 tgcttctacttctactggtga 1909



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 449  tgcttctacttctactggtga 469
            |||||||||||||||||||||
Sbjct: 1893 tgcttctacttctactggtga 1873



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 449  tgcttctacttctactggtga 469
            |||||||||||||||||||||
Sbjct: 1785 tgcttctacttctactggtga 1765



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 449  tgcttctacttctactggtga 469
            |||||||||||||||||||||
Sbjct: 1659 tgcttctacttctactggtga 1639
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>gb|AC150391.2| Branchiostoma floridae clone CH302-119J21, complete sequence
          Length = 157607

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 445   acattgcttctacttctact 464
             ||||||||||||||||||||
Sbjct: 81041 acattgcttctacttctact 81060
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>gb|AY234384.1|AY234384S1 Rubrivivax gelatinosus strain S1 5' region photosynthesis gene cluster,
             partial sequence
          Length = 24637

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 358   cggtggcggcgctgacgcgc 377
             ||||||||||||||||||||
Sbjct: 12071 cggtggcggcgctgacgcgc 12090
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>gb|AC159991.9| Mus musculus chromosome 1, clone RP23-413H17, complete sequence
          Length = 180715

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   tgttcctgagctccacggtg 362
             ||||||||||||||||||||
Sbjct: 97617 tgttcctgagctccacggtg 97636
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>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome
          Length = 1827111

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 298    ttgatgatgatactgctatg 317
              ||||||||||||||||||||
Sbjct: 312494 ttgatgatgatactgctatg 312513
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>ref|XM_745197.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g05410)
           partial mRNA
          Length = 1854

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 334 agttcctcttgttcctgagc 353
           ||||||||||||||||||||
Sbjct: 557 agttcctcttgttcctgagc 538
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>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 358   cggtggcggcgctgacgcgc 377
             ||||||||||||||||||||
Sbjct: 96179 cggtggcggcgctgacgcgc 96198
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>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 358  cggtggcggcgctgacgcgc 377
            ||||||||||||||||||||
Sbjct: 7081 cggtggcggcgctgacgcgc 7100
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>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 358    cggtggcggcgctgacgcgc 377
              ||||||||||||||||||||
Sbjct: 291999 cggtggcggcgctgacgcgc 292018
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>dbj|AB243297.1| Rhizosolenia setigera RNA virus RsRNAV ORF-1, RsRNAV ORF-2 genes for
            polyprotein, capsid proteins, complete cds
          Length = 8877

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 299  tgatgatgatactgctatgg 318
            ||||||||||||||||||||
Sbjct: 1425 tgatgatgatactgctatgg 1444
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>gb|AC110616.4| Homo sapiens BAC clone RP11-597I10 from 4, complete sequence
          Length = 80656

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 439   cacaagacattgcttctacttcta 462
             |||||||||||||||| |||||||
Sbjct: 43690 cacaagacattgcttccacttcta 43667
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>ref|NM_205829.1| Xenopus tropicalis hypothetical protein MGC75848 (MGC75848), mRNA
          Length = 2099

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 288 atggatcaacttgatgatga 307
           ||||||||||||||||||||
Sbjct: 727 atggatcaacttgatgatga 746
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>gb|BC066129.1| Xenopus tropicalis hypothetical protein MGC75848, mRNA (cDNA clone
           MGC:75848 IMAGE:5382660), complete cds
          Length = 2099

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 288 atggatcaacttgatgatga 307
           ||||||||||||||||||||
Sbjct: 727 atggatcaacttgatgatga 746
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>emb|CR761091.2| Xenopus tropicalis finished cDNA, clone TEgg073i18
          Length = 2003

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 288 atggatcaacttgatgatga 307
           ||||||||||||||||||||
Sbjct: 679 atggatcaacttgatgatga 698


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,415,658
Number of Sequences: 3902068
Number of extensions: 3415658
Number of successful extensions: 55179
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55131
Number of HSP's gapped (non-prelim): 48
length of query: 485
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 463
effective length of database: 17,147,199,772
effective search space: 7939153494436
effective search space used: 7939153494436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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