ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal33n19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468292.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1238 Score = 571 bits (288), Expect = e-160 Identities = 405/444 (91%) Strand = Plus / Plus Query: 63 ctcaaccggtcatcgtcgcgggggcagctgccgccgcaggagctgctcgacgatctctgc 122 ||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 118 ctcaaccggtcgtcgtcgagggggcagctgccgccgcaggagcttctcgacgatctctgc 177 Query: 123 agccggttcgtgctgaacgtgcccaaggaggacctggagtcgttcgagcggatcctgttc 182 ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 178 agccgcttcgtgctcaacgtgcccaaggaggatttggagtcgttcgagcggatcctgttc 237 Query: 183 ctgctggagcaggcgcactggttctacgaggacaactccgtggagcacaacccctccctc 242 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 238 ttgctggagcaggcgcactggttctacgaggacaactccgtcgagcacaacccctccctc 297 Query: 243 aagtccctctccttcaaggacttcacctccctcatgttcaacagctgcgccgccctcagg 302 ||||| |||||||||||||||||||| | ||||||||||| ||||| || || |||||| Sbjct: 298 aagtcgctctccttcaaggacttcactacgctcatgttcaatagctgtgctgcgctcagg 357 Query: 303 ccctaccgcgcgcacctcgacgacatctacaaggacttcacccactacaagttccgcgtc 362 || |||||||||||||| || ||||| |||||||| ||||| ||||| |||||||| ||| Sbjct: 358 ccataccgcgcgcaccttgatgacatttacaaggatttcactcactataagttccgtgtc 417 Query: 363 cccgtctccggcgccatcatcctcgatgacaactatgacaggtgcttacttgtgaaggga 422 || |||| ||||||||||||||||||||||| ||| || | |||||| |||||||||||| Sbjct: 418 cctgtctgcggcgccatcatcctcgatgacacctacgagaagtgcttgcttgtgaaggga 477 Query: 423 tggaagtctagtgccagctggagtttcccccgtggaaagaggagcaaagatgaagaggat 482 ||||||||||| |||||||||||||| || |||||||||||||| ||||||||||| ||| Sbjct: 478 tggaagtctagcgccagctggagttttcctcgtggaaagaggagtaaagatgaagaagat 537 Query: 483 catacttgtgcagttagagaagtt 506 ||||| ||||| |||||||||||| Sbjct: 538 catacatgtgctgttagagaagtt 561
>dbj|AK065642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037H08, full insert sequence Length = 2769 Score = 571 bits (288), Expect = e-160 Identities = 405/444 (91%) Strand = Plus / Minus Query: 63 ctcaaccggtcatcgtcgcgggggcagctgccgccgcaggagctgctcgacgatctctgc 122 ||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 584 ctcaaccggtcgtcgtcgagggggcagctgccgccgcaggagcttctcgacgatctctgc 525 Query: 123 agccggttcgtgctgaacgtgcccaaggaggacctggagtcgttcgagcggatcctgttc 182 ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 524 agccgcttcgtgctcaacgtgcccaaggaggatttggagtcgttcgagcggatcctgttc 465 Query: 183 ctgctggagcaggcgcactggttctacgaggacaactccgtggagcacaacccctccctc 242 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 464 ttgctggagcaggcgcactggttctacgaggacaactccgtcgagcacaacccctccctc 405 Query: 243 aagtccctctccttcaaggacttcacctccctcatgttcaacagctgcgccgccctcagg 302 ||||| |||||||||||||||||||| | ||||||||||| ||||| || || |||||| Sbjct: 404 aagtcgctctccttcaaggacttcactacgctcatgttcaatagctgtgctgcgctcagg 345 Query: 303 ccctaccgcgcgcacctcgacgacatctacaaggacttcacccactacaagttccgcgtc 362 || |||||||||||||| || ||||| |||||||| ||||| ||||| |||||||| ||| Sbjct: 344 ccataccgcgcgcaccttgatgacatttacaaggatttcactcactataagttccgtgtc 285 Query: 363 cccgtctccggcgccatcatcctcgatgacaactatgacaggtgcttacttgtgaaggga 422 || |||| ||||||||||||||||||||||| ||| || | |||||| |||||||||||| Sbjct: 284 cctgtctgcggcgccatcatcctcgatgacacctacgagaagtgcttgcttgtgaaggga 225 Query: 423 tggaagtctagtgccagctggagtttcccccgtggaaagaggagcaaagatgaagaggat 482 ||||||||||| |||||||||||||| || |||||||||||||| ||||||||||| ||| Sbjct: 224 tggaagtctagcgccagctggagttttcctcgtggaaagaggagtaaagatgaagaagat 165 Query: 483 catacttgtgcagttagagaagtt 506 ||||| ||||| |||||||||||| Sbjct: 164 catacatgtgctgttagagaagtt 141
>dbj|AK073740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K03, full insert sequence Length = 1238 Score = 563 bits (284), Expect = e-157 Identities = 404/444 (90%) Strand = Plus / Plus Query: 63 ctcaaccggtcatcgtcgcgggggcagctgccgccgcaggagctgctcgacgatctctgc 122 ||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 118 ctcaaccggtcgtcgtcgagggggcagctgccgccgcaggagcttctcgacgatctctgc 177 Query: 123 agccggttcgtgctgaacgtgcccaaggaggacctggagtcgttcgagcggatcctgttc 182 ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 178 agccgcttcgtgctcaacgtgcccaaggaggatttggagtcgttcgagcggatcctgttc 237 Query: 183 ctgctggagcaggcgcactggttctacgaggacaactccgtggagcacaacccctccctc 242 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 238 ttgctggagcaggcgcactggttctacgaggacaactccgtcgagcacaacccctccctc 297 Query: 243 aagtccctctccttcaaggacttcacctccctcatgttcaacagctgcgccgccctcagg 302 ||||| |||||||||||||||||||| | ||||||||||| ||||| || || |||||| Sbjct: 298 aagtcgctctccttcaaggacttcactacgctcatgttcaatagctgtgctgcgctcagg 357 Query: 303 ccctaccgcgcgcacctcgacgacatctacaaggacttcacccactacaagttccgcgtc 362 || |||| ||||||||| || ||||| |||||||| ||||| ||||| |||||||| ||| Sbjct: 358 ccataccacgcgcaccttgatgacatttacaaggatttcactcactataagttccgtgtc 417 Query: 363 cccgtctccggcgccatcatcctcgatgacaactatgacaggtgcttacttgtgaaggga 422 || |||| ||||||||||||||||||||||| ||| || | |||||| |||||||||||| Sbjct: 418 cctgtctgcggcgccatcatcctcgatgacacctacgagaagtgcttgcttgtgaaggga 477 Query: 423 tggaagtctagtgccagctggagtttcccccgtggaaagaggagcaaagatgaagaggat 482 ||||||||||| |||||||||||||| || |||||||||||||| ||||||||||| ||| Sbjct: 478 tggaagtctagcgccagctggagttttcctcgtggaaagaggagtaaagatgaagaagat 537 Query: 483 catacttgtgcagttagagaagtt 506 ||||| ||||| |||||||||||| Sbjct: 538 catacatgtgctgttagagaagtt 561
>gb|AY105709.1| Zea mays PCO116780 mRNA sequence Length = 1656 Score = 454 bits (229), Expect = e-124 Identities = 388/441 (87%) Strand = Plus / Plus Query: 66 aaccggtcatcgtcgcgggggcagctgccgccgcaggagctgctcgacgatctctgcagc 125 |||||||| || ||| ||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 309 aaccggtcttcatcgagggggcagctgccgccgcaagagctgcttgacgatctctgcagc 368 Query: 126 cggttcgtgctgaacgtgcccaaggaggacctggagtcgttcgagcggatcctgttcctg 185 |||||| | ||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 369 cggttccttctgaatgtgcccaaggaggaactggagtcgttcgagcggatcctgttcctg 428 Query: 186 ctggagcaggcgcactggttctacgaggacaactccgtggagcacaacccctccctcaag 245 ||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| Sbjct: 429 ctggagcaggcgcactggttctatgaggacaactccgttgagcacaaccccaacctcaag 488 Query: 246 tccctctccttcaaggacttcacctccctcatgttcaacagctgcgccgccctcaggccc 305 ||||||||||||||||||||||| |||||||||||||| |||||| | || ||| ||||| Sbjct: 489 tccctctccttcaaggacttcacttccctcatgttcaagagctgcactgctctccggccc 548 Query: 306 taccgcgcgcacctcgacgacatctacaaggacttcacccactacaagttccgcgtcccc 365 ||| ||||||||| || || |||||||||||||||| | |||||||||| || || || Sbjct: 549 tacatcgcgcacctggatgatatctacaaggacttcaacaactacaagtttcgtgtgcct 608 Query: 366 gtctccggcgccatcatcctcgatgacaactatgacaggtgcttacttgtgaagggatgg 425 || ||||||||||||||||| || |||| ||||| |||||||| ||||| || |||||| Sbjct: 609 gtgtccggcgccatcatcctagacgacacttatgagaggtgcttgcttgttaaaggatgg 668 Query: 426 aagtctagtgccagctggagtttcccccgtggaaagaggagcaaagatgaagaggatcat 485 ||| || | ||||||||||| || || ||||||||||||| |||||||| || || || Sbjct: 669 aaggctggggccagctggagctttcctcgtggaaagaggaataaagatgaggaagaccac 728 Query: 486 acttgtgcagttagagaagtt 506 || ||||| |||||||||||| Sbjct: 729 acatgtgctgttagagaagtt 749
>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049O12, from chromosome 2, complete sequence Length = 155154 Score = 238 bits (120), Expect = 1e-59 Identities = 141/148 (95%) Strand = Plus / Plus Query: 121 gcagccggttcgtgctgaacgtgcccaaggaggacctggagtcgttcgagcggatcctgt 180 ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct: 104802 gcagccgcttcgtgctcaacgtgcccaaggaggatttggagtcgttcgagcggatcctgt 104861 Query: 181 tcctgctggagcaggcgcactggttctacgaggacaactccgtggagcacaacccctccc 240 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 104862 tcttgctggagcaggcgcactggttctacgaggacaactccgtcgagcacaacccctccc 104921 Query: 241 tcaagtccctctccttcaaggacttcac 268 ||||||| |||||||||||||||||||| Sbjct: 104922 tcaagtcgctctccttcaaggacttcac 104949 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Plus Query: 404 gtgcttacttgtgaagggatggaagtctagtgccagctggagtttcccccgtggaaagag 463 |||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||| Sbjct: 105535 gtgcttgcttgtgaagggatggaagtctagcgccagctggagttttcctcgtggaaagag 105594 Query: 464 gagcaaagatgaagaggatcatacttgtgcagttagagaagt 505 ||| ||||||||||| |||||||| ||||| ||||||||||| Sbjct: 105595 gagtaaagatgaagaagatcatacatgtgctgttagagaagt 105636 Score = 121 bits (61), Expect = 2e-24 Identities = 103/117 (88%) Strand = Plus / Plus Query: 277 tgttcaacagctgcgccgccctcaggccctaccgcgcgcacctcgacgacatctacaagg 336 ||||||| ||||| || || |||||||| |||||||||||||| || ||||| ||||||| Sbjct: 105060 tgttcaatagctgtgctgcgctcaggccataccgcgcgcaccttgatgacatttacaagg 105119 Query: 337 acttcacccactacaagttccgcgtccccgtctccggcgccatcatcctcgatgaca 393 | ||||| ||||| |||||||| ||||| |||| ||||||||||||||||||||||| Sbjct: 105120 atttcactcactataagttccgtgtccctgtctgcggcgccatcatcctcgatgaca 105176 Score = 99.6 bits (50), Expect = 9e-18 Identities = 59/62 (95%) Strand = Plus / Plus Query: 63 ctcaaccggtcatcgtcgcgggggcagctgccgccgcaggagctgctcgacgatctctgc 122 ||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 104622 ctcaaccggtcgtcgtcgagggggcagctgccgccgcaggagcttctcgacgatctctgc 104681 Query: 123 ag 124 || Sbjct: 104682 ag 104683
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 238 bits (120), Expect = 1e-59 Identities = 141/148 (95%) Strand = Plus / Minus Query: 121 gcagccggttcgtgctgaacgtgcccaaggaggacctggagtcgttcgagcggatcctgt 180 ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct: 34400304 gcagccgcttcgtgctcaacgtgcccaaggaggatttggagtcgttcgagcggatcctgt 34400245 Query: 181 tcctgctggagcaggcgcactggttctacgaggacaactccgtggagcacaacccctccc 240 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 34400244 tcttgctggagcaggcgcactggttctacgaggacaactccgtcgagcacaacccctccc 34400185 Query: 241 tcaagtccctctccttcaaggacttcac 268 ||||||| |||||||||||||||||||| Sbjct: 34400184 tcaagtcgctctccttcaaggacttcac 34400157 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Minus Query: 404 gtgcttacttgtgaagggatggaagtctagtgccagctggagtttcccccgtggaaagag 463 |||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||| Sbjct: 34399571 gtgcttgcttgtgaagggatggaagtctagcgccagctggagttttcctcgtggaaagag 34399512 Query: 464 gagcaaagatgaagaggatcatacttgtgcagttagagaagt 505 ||| ||||||||||| |||||||| ||||| ||||||||||| Sbjct: 34399511 gagtaaagatgaagaagatcatacatgtgctgttagagaagt 34399470 Score = 121 bits (61), Expect = 2e-24 Identities = 103/117 (88%) Strand = Plus / Minus Query: 277 tgttcaacagctgcgccgccctcaggccctaccgcgcgcacctcgacgacatctacaagg 336 ||||||| ||||| || || |||||||| |||||||||||||| || ||||| ||||||| Sbjct: 34400046 tgttcaatagctgtgctgcgctcaggccataccgcgcgcaccttgatgacatttacaagg 34399987 Query: 337 acttcacccactacaagttccgcgtccccgtctccggcgccatcatcctcgatgaca 393 | ||||| ||||| |||||||| ||||| |||| ||||||||||||||||||||||| Sbjct: 34399986 atttcactcactataagttccgtgtccctgtctgcggcgccatcatcctcgatgaca 34399930 Score = 99.6 bits (50), Expect = 9e-18 Identities = 59/62 (95%) Strand = Plus / Minus Query: 63 ctcaaccggtcatcgtcgcgggggcagctgccgccgcaggagctgctcgacgatctctgc 122 ||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 34400484 ctcaaccggtcgtcgtcgagggggcagctgccgccgcaggagcttctcgacgatctctgc 34400425 Query: 123 ag 124 || Sbjct: 34400424 ag 34400423
>dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1548_F12 Length = 118814 Score = 238 bits (120), Expect = 1e-59 Identities = 141/148 (95%) Strand = Plus / Minus Query: 121 gcagccggttcgtgctgaacgtgcccaaggaggacctggagtcgttcgagcggatcctgt 180 ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct: 97951 gcagccgcttcgtgctcaacgtgcccaaggaggatttggagtcgttcgagcggatcctgt 97892 Query: 181 tcctgctggagcaggcgcactggttctacgaggacaactccgtggagcacaacccctccc 240 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 97891 tcttgctggagcaggcgcactggttctacgaggacaactccgtcgagcacaacccctccc 97832 Query: 241 tcaagtccctctccttcaaggacttcac 268 ||||||| |||||||||||||||||||| Sbjct: 97831 tcaagtcgctctccttcaaggacttcac 97804 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Minus Query: 404 gtgcttacttgtgaagggatggaagtctagtgccagctggagtttcccccgtggaaagag 463 |||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||| Sbjct: 97218 gtgcttgcttgtgaagggatggaagtctagcgccagctggagttttcctcgtggaaagag 97159 Query: 464 gagcaaagatgaagaggatcatacttgtgcagttagagaagt 505 ||| ||||||||||| |||||||| ||||| ||||||||||| Sbjct: 97158 gagtaaagatgaagaagatcatacatgtgctgttagagaagt 97117 Score = 121 bits (61), Expect = 2e-24 Identities = 103/117 (88%) Strand = Plus / Minus Query: 277 tgttcaacagctgcgccgccctcaggccctaccgcgcgcacctcgacgacatctacaagg 336 ||||||| ||||| || || |||||||| |||||||||||||| || ||||| ||||||| Sbjct: 97693 tgttcaatagctgtgctgcgctcaggccataccgcgcgcaccttgatgacatttacaagg 97634 Query: 337 acttcacccactacaagttccgcgtccccgtctccggcgccatcatcctcgatgaca 393 | ||||| ||||| |||||||| ||||| |||| ||||||||||||||||||||||| Sbjct: 97633 atttcactcactataagttccgtgtccctgtctgcggcgccatcatcctcgatgaca 97577 Score = 99.6 bits (50), Expect = 9e-18 Identities = 59/62 (95%) Strand = Plus / Minus Query: 63 ctcaaccggtcatcgtcgcgggggcagctgccgccgcaggagctgctcgacgatctctgc 122 ||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 98131 ctcaaccggtcgtcgtcgagggggcagctgccgccgcaggagcttctcgacgatctctgc 98072 Query: 123 ag 124 || Sbjct: 98071 ag 98070
>dbj|AP004153.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1111_C07 Length = 115190 Score = 238 bits (120), Expect = 1e-59 Identities = 141/148 (95%) Strand = Plus / Minus Query: 121 gcagccggttcgtgctgaacgtgcccaaggaggacctggagtcgttcgagcggatcctgt 180 ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct: 16546 gcagccgcttcgtgctcaacgtgcccaaggaggatttggagtcgttcgagcggatcctgt 16487 Query: 181 tcctgctggagcaggcgcactggttctacgaggacaactccgtggagcacaacccctccc 240 || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 16486 tcttgctggagcaggcgcactggttctacgaggacaactccgtcgagcacaacccctccc 16427 Query: 241 tcaagtccctctccttcaaggacttcac 268 ||||||| |||||||||||||||||||| Sbjct: 16426 tcaagtcgctctccttcaaggacttcac 16399 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Minus Query: 404 gtgcttacttgtgaagggatggaagtctagtgccagctggagtttcccccgtggaaagag 463 |||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||| Sbjct: 15813 gtgcttgcttgtgaagggatggaagtctagcgccagctggagttttcctcgtggaaagag 15754 Query: 464 gagcaaagatgaagaggatcatacttgtgcagttagagaagt 505 ||| ||||||||||| |||||||| ||||| ||||||||||| Sbjct: 15753 gagtaaagatgaagaagatcatacatgtgctgttagagaagt 15712 Score = 121 bits (61), Expect = 2e-24 Identities = 103/117 (88%) Strand = Plus / Minus Query: 277 tgttcaacagctgcgccgccctcaggccctaccgcgcgcacctcgacgacatctacaagg 336 ||||||| ||||| || || |||||||| |||||||||||||| || ||||| ||||||| Sbjct: 16288 tgttcaatagctgtgctgcgctcaggccataccgcgcgcaccttgatgacatttacaagg 16229 Query: 337 acttcacccactacaagttccgcgtccccgtctccggcgccatcatcctcgatgaca 393 | ||||| ||||| |||||||| ||||| |||| ||||||||||||||||||||||| Sbjct: 16228 atttcactcactataagttccgtgtccctgtctgcggcgccatcatcctcgatgaca 16172 Score = 99.6 bits (50), Expect = 9e-18 Identities = 59/62 (95%) Strand = Plus / Minus Query: 63 ctcaaccggtcatcgtcgcgggggcagctgccgccgcaggagctgctcgacgatctctgc 122 ||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 16726 ctcaaccggtcgtcgtcgagggggcagctgccgccgcaggagcttctcgacgatctctgc 16667 Query: 123 ag 124 || Sbjct: 16666 ag 16665
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 173 gatcctgttcctgctggagcaggcg 197 |||||||||||||||||||| |||| Sbjct: 4438319 gatcctgttcctgctggagctggcg 4438295
>gb|AC155172.4| Mus musculus BAC clone RP23-36N9 from chromosome 14, complete sequence Length = 255753 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 cctccctcaagtccctctcct 255 ||||||||||||||||||||| Sbjct: 157657 cctccctcaagtccctctcct 157677
>gb|AC132441.3| Mus musculus BAC clone RP23-239J2 from chromosome 18, complete sequence Length = 189507 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 caacccctccctcaagtccc 249 |||||||||||||||||||| Sbjct: 117832 caacccctccctcaagtccc 117851
>ref|XM_385587.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05411.1) partial mRNA Length = 2496 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 435 gccagctggagtttcccccgtggaaaga 462 |||| ||||||||||||||| ||||||| Sbjct: 364 gccaactggagtttcccccgcggaaaga 391
>gb|AC090419.7| Homo sapiens chromosome 17, clone CTD-2107B16, complete sequence Length = 139585 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 cttcacccactacaagttcc 357 |||||||||||||||||||| Sbjct: 126809 cttcacccactacaagttcc 126790
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 gagcacaacccctccctcaagtcc 248 |||||| ||||||||||||||||| Sbjct: 1959469 gagcacgacccctccctcaagtcc 1959446
>gb|AC139677.4| Homo sapiens chromosome 17, clone RP11-1070B7, complete sequence Length = 179564 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 cttcacccactacaagttcc 357 |||||||||||||||||||| Sbjct: 154172 cttcacccactacaagttcc 154191
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 cgccgcaggagctgctcgac 113 |||||||||||||||||||| Sbjct: 4326476 cgccgcaggagctgctcgac 4326495
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gctgccgccgcaggagctgc 108 |||||||||||||||||||| Sbjct: 6752562 gctgccgccgcaggagctgc 6752581
>gb|AE005077.1| Halobacterium sp. NRC-1 section 108 of 170 of the complete genome Length = 14625 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 gcaggagctgctcgacgatctctg 121 |||||||||| ||||||||||||| Sbjct: 11645 gcaggagctggtcgacgatctctg 11622
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 tcgagcggatcctgttcctg 185 |||||||||||||||||||| Sbjct: 1303685 tcgagcggatcctgttcctg 1303704
>gb|AC005829.1|AC005829 Homo sapiens chromosome 17, clone hRPK.259_G_18, complete sequence Length = 170030 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 cttcacccactacaagttcc 357 |||||||||||||||||||| Sbjct: 115545 cttcacccactacaagttcc 115526
>gb|AC127032.8| Homo sapiens chromosome 17, clone RP11-162O14, complete sequence Length = 187685 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 cttcacccactacaagttcc 357 |||||||||||||||||||| Sbjct: 141554 cttcacccactacaagttcc 141535 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,385,240 Number of Sequences: 3902068 Number of extensions: 3385240 Number of successful extensions: 72612 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72234 Number of HSP's gapped (non-prelim): 378 length of query: 506 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 484 effective length of database: 17,147,199,772 effective search space: 8299244689648 effective search space used: 8299244689648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
